RchiOBHm_Chr6g0260691

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001771
Physical Location & Seq
Forward (+)
15670543 .. 15672005
1463 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23379

Sequence Viewer

Length: 819 bp
ATGCAAGGCCTCCACCACCAACAGGAGCAACTAGCCGCTCTTCTCTCCGTCGCTCTTCCCAAGGACGATTCCTCTTCCCCTTCTAAACCCGACGACGATGACTCCGCTCGACTCGCCGCCCTCAACTCCCTCCACCGCGCCATTCTCTACCCTCCCAACTCCCTCCTCGTCACTCACTCCGCCTCTTTCCTCGCCCAGGGCTTCTCTCAGCTTCTCTCCGATAAATGTTATGGGGTGAGGCAAGAGGCTGCGGTGGCATATGGTGCTCTTTGTGCTGTGGTTTGCTCAATTCCTATAACTTCAAATGGAAGACAGAACCATGTTATGCTTGGGAGCTTGGTTGACCGCTTCATTGGTTGGGCGCTGCCGTTGCTTAGCAATATCAGCGCCGGAGATGGGACCGCGGAATTGGCATTGGACGGCCTGCGAGAGTTTCTTAATGTTGGGGATGTTGGCGGGATCGAGAGATATGCTTTGTCAATTCTTAAAGCGTGCCAAGTTCTTCTTGAGGATGAGAGAACCTCCTTGAGTCTGTTGCACCGCCTTCTCGGTGTTTTGACTTTGATTTCATTGAAGTTTTCTAGATACTTCCAACCTCATTTTCTTGACATTGTTGATCTGCTTCTCGGGTGGGCGTTGGTACCGGACCTTGCCGAATCAGATAGAAGAATTATAATGGATAGTTTCTTACAGTTTCAGAATCATTGGGACATGGATGTTTGCAGTTTGCAGTTTTCTCTGGGATTGCTGTCGAAGTTTGTAGGAGACATGGATGTTTTGATTCAGGATGTAAGTCATGGAACCCCACAACAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

272

Amino Acids

29.8

Weight (kDa)

5.02

Isoelectric Point (pI)

31.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 674
Acc65I GGTACC 1 cut(s) 640
AccB1I GGYRCC 1 cut(s) 640
AccBSI CCGCTC 2 cut(s) 38, 107
AccII CGCG 2 cut(s) 138, 404
AclWI GGATC 1 cut(s) 467
AfaI GTAC 1 cut(s) 642
AfiI CCNNNNNNNGG 3 cut(s) 22, 196, 396
AgsI TTSAA 2 cut(s) 303, 574
AjnI CCWGG 1 cut(s) 195
AjuI GAANNNNNNNTTGG 2 cut(s) 585, 617
AluBI AGCT 2 cut(s) 211, 336
AluI AGCT 2 cut(s) 211, 336
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 1 cut(s) 759
AlwI GGATC 1 cut(s) 467
Ama87I CYCGRG 1 cut(s) 626
AoxI GGCC 2 cut(s) 7, 421
ApeKI GCWGC 2 cut(s) 248, 364
Asp718I GGTACC 1 cut(s) 640
AspLEI GCGC 3 cut(s) 140, 364, 389
AspS9I GGNCC 2 cut(s) 399, 646
AsuHPI GGTGA 1 cut(s) 247
AvaI CYCGRG 1 cut(s) 626
AvaII GGWCC 2 cut(s) 399, 646
BanI GGYRCC 1 cut(s) 640
BbsI GAAGAC 1 cut(s) 316
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 2 cut(s) 235, 351
BccI CCATC 1 cut(s) 389
BceAI ACGGC 2 cut(s) 352, 436
BcgI CGANNNNNNTGC 2 cut(s) 452, 486
BciT130I CCWGG 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 759
BfaI CTAG 2 cut(s) 32, 582
BfoI RGCGCY 2 cut(s) 365, 390
BisI GCNGC 4 cut(s) 36, 117, 249, 365
BlpI GCTNAGC 1 cut(s) 374
BlsI GCNGC 4 cut(s) 37, 118, 250, 366
Bme1390I CCNGG 1 cut(s) 197
Bme18I GGWCC 2 cut(s) 399, 646
BmeT110I CYCGRG 1 cut(s) 626
BmgT120I GGNCC 2 cut(s) 399, 646
BmiI GGNNCC 3 cut(s) 400, 642, 802
BmrFI CCNGG 1 cut(s) 197
BpiI GAAGAC 1 cut(s) 316
BplI GAGNNNNNCTC 2 cut(s) 506, 538
Bpu1102I GCTNAGC 1 cut(s) 374
BpuEI CTTGAG 2 cut(s) 527, 547
BsaJI CCNNGG 4 cut(s) 60, 195, 196, 402
BsaWI WCCGGW 1 cut(s) 643
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 196, 396
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 4 cut(s) 60, 195, 196, 402
BseGI GGATG 5 cut(s) 454, 517, 721, 778, 793
BseLI CCNNNNNNNGG 3 cut(s) 22, 196, 396
BseMII CTCAG 1 cut(s) 221
BseRI GAGGAG 1 cut(s) 155
BseXI GCAGC 2 cut(s) 235, 351
Bsh1236I CGCG 2 cut(s) 138, 404
BshFI GGCC 2 cut(s) 9, 423
BshNI GGYRCC 1 cut(s) 640
BsiHKAI GWGCWC 1 cut(s) 268
BsiHKCI CYCGRG 1 cut(s) 626
BsiSI CCGG 2 cut(s) 390, 644
BslFI GGGAC 2 cut(s) 412, 722
BslI CCNNNNNNNGG 3 cut(s) 22, 196, 396
BsmAI GTCTC 1 cut(s) 759
BsmFI GGGAC 2 cut(s) 412, 722
BsnI GGCC 2 cut(s) 9, 423
BsoBI CYCGRG 1 cut(s) 626
Bsp1286I GDGCHC 1 cut(s) 268
Bsp143I GATC 2 cut(s) 459, 616
Bsp1720I GCTNAGC 1 cut(s) 374
BspANI GGCC 2 cut(s) 9, 423
BspCNI CTCAG 1 cut(s) 220
BspFNI CGCG 2 cut(s) 138, 404
BspLI GGNNCC 3 cut(s) 400, 642, 802
BspPI GGATC 1 cut(s) 467
BspQI GCTCTTC 2 cut(s) 45, 60
BspT107I GGYRCC 1 cut(s) 640
BsrBI CCGCTC 2 cut(s) 38, 107
BssECI CCNNGG 4 cut(s) 60, 195, 196, 402
BssMI GATC 2 cut(s) 459, 616
BssT1I CCWWGG 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 693
Bst6I CTCTTC 3 cut(s) 45, 60, 79
BstAPI GCANNNNNTGC 1 cut(s) 263
BstC8I GCNNGC 2 cut(s) 425, 493
BstDEI CTNAG 2 cut(s) 207, 374
BstDSI CCRYGG 1 cut(s) 402
BstENI CCTNNNNNAGG 1 cut(s) 194
BstF5I GGATG 5 cut(s) 454, 517, 721, 778, 793
BstFNI CGCG 2 cut(s) 138, 404
BstH2I RGCGCY 2 cut(s) 365, 390
BstHHI GCGC 3 cut(s) 140, 364, 389
BstKTI GATC 2 cut(s) 462, 619
BstMAI GTCTC 1 cut(s) 759
BstMBI GATC 2 cut(s) 459, 616
BstMWI GCNNNNNNNGC 7 cut(s) 113, 254, 263, 272, 370, 384, 410
BstNI CCWGG 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 195
BstUI CGCG 2 cut(s) 138, 404
BstV1I GCAGC 2 cut(s) 235, 351
BstV2I GAAGAC 1 cut(s) 316
BsuRI GGCC 2 cut(s) 9, 423
BtgI CCRYGG 1 cut(s) 402
BtsCI GGATG 5 cut(s) 454, 517, 721, 778, 793
Cac8I GCNNGC 2 cut(s) 425, 493
CfoI GCGC 3 cut(s) 140, 364, 389
Cfr13I GGNCC 2 cut(s) 399, 646
Cfr42I CCGCGG 1 cut(s) 405
Csp6I GTAC 1 cut(s) 641
CviAII CATG 4 cut(s) 320, 712, 769, 797
CviJI RGCY 7 cut(s) 9, 35, 201, 211, 248, 336, 423
CviKI_1 RGCY 7 cut(s) 9, 35, 201, 211, 248, 336, 423
CviQI GTAC 1 cut(s) 641
DdeI CTNAG 2 cut(s) 207, 374
DpnI GATC 2 cut(s) 461, 618
DpnII GATC 2 cut(s) 459, 616
Eam1104I CTCTTC 3 cut(s) 45, 60, 79
EarI CTCTTC 3 cut(s) 45, 60, 79
EciI GGCGGA 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 60
Eco147I AGGCCT 1 cut(s) 9
Eco47I GGWCC 2 cut(s) 399, 646
Eco88I CYCGRG 1 cut(s) 626
EcoNI CCTNNNNNAGG 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 4 cut(s) 323, 715, 772, 800
FalI AAGNNNNNCTT 2 cut(s) 489, 521
FaqI GGGAC 2 cut(s) 412, 722
FatI CATG 4 cut(s) 319, 711, 768, 796
FauI CCCGC 1 cut(s) 449
FauNDI CATATG 1 cut(s) 259
Fnu4HI GCNGC 4 cut(s) 36, 117, 249, 365
FokI GGATG 5 cut(s) 461, 524, 728, 785, 800
Fsp4HI GCNGC 4 cut(s) 36, 117, 249, 365
FspBI CTAG 2 cut(s) 32, 582
GlaI GCGC 3 cut(s) 139, 363, 388
GluI GCNGC 4 cut(s) 36, 117, 249, 365
HaeII RGCGCY 2 cut(s) 365, 390
HaeIII GGCC 2 cut(s) 9, 423
HapII CCGG 2 cut(s) 390, 644
HhaI GCGC 3 cut(s) 140, 364, 389
Hin1II CATG 4 cut(s) 323, 715, 772, 800
Hin6I GCGC 3 cut(s) 138, 362, 387
HinP1I GCGC 3 cut(s) 138, 362, 387
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 7 cut(s) 68, 101, 111, 529, 656, 700, 781
HpaII CCGG 2 cut(s) 390, 644
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 4 cut(s) 220, 661, 699, 818
Hpy188III TCNNGA 5 cut(s) 463, 506, 582, 605, 785
Hpy8I GTNNAC 1 cut(s) 343
Hpy99I CGWCG 3 cut(s) 53, 95, 98
HpyAV CCTTC 2 cut(s) 90, 554
HpyCH4III ACNGT 1 cut(s) 693
HpyCH4V TGCA 4 cut(s) 4, 538, 723, 730
HpyF10VI GCNNNNNNNGC 7 cut(s) 113, 254, 263, 272, 370, 384, 410
HpyF3I CTNAG 2 cut(s) 207, 374
Hsp92II CATG 4 cut(s) 323, 715, 772, 800
HspAI GCGC 3 cut(s) 138, 362, 387
KpnI GGTACC 1 cut(s) 644
KspI CCGCGG 1 cut(s) 405
Kzo9I GATC 2 cut(s) 459, 616
LguI GCTCTTC 2 cut(s) 45, 60
LmnI GCTCC 2 cut(s) 25, 333
LpnPI CCDG 8 cut(s) 8, 182, 209, 403, 437, 657, 725, 770
Lsp1109I GCAGC 2 cut(s) 235, 351
MaeI CTAG 2 cut(s) 32, 582
MaeIII GTNAC 1 cut(s) 169
MalI GATC 2 cut(s) 461, 618
MbiI CCGCTC 2 cut(s) 38, 107
MboI GATC 2 cut(s) 459, 616
MboII GAAGA 6 cut(s) 32, 47, 66, 321, 494, 678
MhlI GDGCHC 1 cut(s) 268
MluCI AATT 5 cut(s) 288, 407, 480, 669, 812
MlyI GAGTC 3 cut(s) 95, 105, 538
MmeI TCCRAC 1 cut(s) 616
MseI TTAA 2 cut(s) 438, 486
MspA1I CMGCKG 1 cut(s) 404
MspI CCGG 2 cut(s) 390, 644
MspR9I CCNGG 1 cut(s) 197
MvaI CCWGG 1 cut(s) 197
MvnI CGCG 2 cut(s) 138, 404
MwoI GCNNNNNNNGC 7 cut(s) 113, 254, 263, 272, 370, 384, 410
NdeI CATATG 1 cut(s) 259
NdeII GATC 2 cut(s) 459, 616
NlaIII CATG 4 cut(s) 323, 715, 772, 800
NlaIV GGNNCC 3 cut(s) 400, 642, 802
NmuCI GTSAC 1 cut(s) 169
PasI CCCWGGG 1 cut(s) 196
PceI AGGCCT 1 cut(s) 9
PciSI GCTCTTC 2 cut(s) 45, 60
PfeI GAWTC 4 cut(s) 68, 656, 700, 781
PkrI GCNGC 4 cut(s) 37, 118, 250, 366
PleI GAGTC 3 cut(s) 95, 105, 537
PpsI GAGTC 3 cut(s) 95, 105, 537
PsiI TTATAA 1 cut(s) 674
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 3 cut(s) 400, 642, 802
PspPI GGNCC 2 cut(s) 399, 646
RsaI GTAC 1 cut(s) 642
RsaNI GTAC 1 cut(s) 641
SacII CCGCGG 1 cut(s) 405
SapI GCTCTTC 2 cut(s) 45, 60
SaqAI TTAA 2 cut(s) 438, 486
SatI GCNGC 4 cut(s) 36, 117, 249, 365
Sau3AI GATC 2 cut(s) 459, 616
Sau96I GGNCC 2 cut(s) 399, 646
SchI GAGTC 3 cut(s) 95, 105, 538
ScrFI CCNGG 1 cut(s) 197
SduI GDGCHC 1 cut(s) 268
SetI ASST 5 cut(s) 213, 338, 524, 598, 651
Sfr303I CCGCGG 1 cut(s) 405
SgrBI CCGCGG 1 cut(s) 405
SinI GGWCC 2 cut(s) 399, 646
SmlI CTYRAG 2 cut(s) 506, 526
SmoI CTYRAG 2 cut(s) 506, 526
Sse9I AATT 5 cut(s) 288, 407, 480, 669, 812
SseBI AGGCCT 1 cut(s) 9
SspMI CTAG 2 cut(s) 32, 582
StuI AGGCCT 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 195
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 693
TaqI TCGA 3 cut(s) 109, 462, 752
TasI AATT 5 cut(s) 288, 407, 480, 669, 812
TauI GCSGC 2 cut(s) 38, 119
TfiI GAWTC 4 cut(s) 68, 656, 700, 781
Tru1I TTAA 2 cut(s) 438, 486
Tru9I TTAA 2 cut(s) 438, 486
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 2 cut(s) 248, 364
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 2 cut(s) 340, 558
TspGWI ACGGA 1 cut(s) 37
VpaK11BI GGWCC 2 cut(s) 399, 646
XagI CCTNNNNNAGG 1 cut(s) 194
XbaI TCTAGA 1 cut(s) 581
XcmI CCANNNNNNNNNTGG 1 cut(s) 326
XspI CTAG 2 cut(s) 32, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.