Rmu_sc0004865.1_g000014

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004865.1
OG0001771
Physical Location & Seq
Reverse (-)
42333 .. 45376
3044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004865.1_g000014.1.cds

Sequence Viewer

Length: 1851 bp
ctgccgttgcttagcaatatcagcgccggagatgggaccgcagaattggcattggacggcctgcgagagtttcttaacgttggggatgttggcgggatcgagagatatgctttgtcaattcttaaagcgtgccaagttcttcttgaggatgagagaacctccttgagtctgtttcactgccttctcggtgttttgactttgatttcattgaagttttctagatacttccaacctcattttcctgacattgttgatctgcttctcgggtgggcgttggtactggaccttgccgaatcagagagaagaattataatggatagtttcttacagtttcagaatcattgggacatggatgtttgtagtttgcagttttctctgggattgctgtcgaagtttgtaggagacatggatgttttgattcaggatgtaagtcatggaaccccacaacaattcctttccgaaggctgctcgcgcagttcggctgccacttatatattcttgcttcaacacgggaataatgaagttgttgaacaagcactgacttcgttaacagaggagctggagttattagaagggatgctagagaaatctgtgggccatgatgatggggttcttgcatgttccaaaacatattcaaaacgtgaattgtttgcattgattaaatttgatttgaaggttctgctatcatgtgttttcctcagtgggggttgtagtcctagtttgattggccaaccagacattgcaaccctatatcttatgaggtcagaaaagttggtgaactttattattgagaaatttaatctttttgacttgcctattatggaatatgtggatgtgcaagtcaatgttttgaagacatttgacaggctaacagtagttaaattcttaagtacctgctctttgtcatatcagagtagtggaaaatcatcaatggatgttacctctgataaattacttaatagtgagtctttgacgaatgaacattcggttgtggttgttgagaatctgagaaagtacagtctgtcttttgtgaaagctctccatgtctcttctccttttgcagttaaagtaactgcgctggattgggtacaaagattttgtgagaatgttattgcttttaatgagaaatcagacacagaatctcgtttctatgaagtgtatggacagcatggtaatgatagaattattgggaacatgctttactcaattatggatgctgcatctgatagggaaccaaaagtccttgcaataactgaagatctacatgatgttcacagtctaggaaaggaggctgctgcagttcatcgttctcttgtggaagacctttcaaaggcaaatgcaattcttcttccactggaaacagtattgtccaaagatgtagctgctatgactgatgctatgtgtagggaaagagtgaccaatatggaaatatctccgattcatggacaagccatataccagtcctattctttaaaaatcagggaggcttgccagaccttacatcccttggtgccctcacttacctcatctgtgaaggggctctattctatgttgaccaggcttgcacgaactgcaagtcttcatgctggggatcttcataaagctcttgaaggactaggagaaagccaggaagtagaatcgccagtaaatgatgtatcaaggccagatcttgctactgatgctgctgggtttgatgacaaggagagagagagaacctctccatgtcaaatggtgagagcatcaaagattttgttggcattggacttcctttggaagataaaggatggttatctccaccagatagtatctgcagtagtagtacagattctggcatttccttgcctgaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

616

Amino Acids

68.38

Weight (kDa)

5.13

Isoelectric Point (pI)

34.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 311
Acc36I ACCTGC 1 cut(s) 902
AccB1I GGYRCC 1 cut(s) 1510
AccII CGCG 1 cut(s) 472
AciI CCGC 2 cut(s) 39, 93
AclI AACGTT 1 cut(s) 78
AclWI GGATC 2 cut(s) 104, 1599
AcoI YGGCCR 1 cut(s) 727
AcsI RAATTY 3 cut(s) 662, 794, 881
AcuI CTGAAG 1 cut(s) 1275
AfaI GTAC 5 cut(s) 279, 892, 1016, 1089, 1821
AfiI CCNNNNNNNGG 4 cut(s) 33, 703, 1330, 1442
AflII CTTAAG 1 cut(s) 886
AgsI TTSAA 8 cut(s) 211, 506, 530, 636, 673, 853, 1329, 1610
AjnI CCWGG 2 cut(s) 1556, 1626
AjuI GAANNNNNNNTTGG 2 cut(s) 222, 254
AloI GAACNNNNNNTCC 2 cut(s) 1224, 1256
AluBI AGCT 4 cut(s) 559, 1037, 1382, 1604
AluI AGCT 4 cut(s) 559, 1037, 1382, 1604
Alw26I GTCTC 2 cut(s) 396, 1051
AlwI GGATC 2 cut(s) 104, 1599
AlwNI CAGNNNCTG 1 cut(s) 1828
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 4 cut(s) 58, 595, 727, 1661
ApeKI GCWGC 7 cut(s) 465, 482, 1217, 1292, 1295, 1382, 1682
ApoI RAATTY 3 cut(s) 662, 794, 881
ArsI GACNNNNNNTTYG 2 cut(s) 1561, 1593
AspLEI GCGC 3 cut(s) 26, 474, 1078
AspS9I GGNCC 3 cut(s) 36, 283, 595
AsuHPI GGTGA 2 cut(s) 787, 1744
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 2 cut(s) 36, 283
BaeGI GKGCMC 1 cut(s) 1515
BalI TGGCCA 1 cut(s) 729
BanI GGYRCC 1 cut(s) 1510
BanII GRGCYC 1 cut(s) 1542
BbsI GAAGAC 3 cut(s) 860, 1326, 1571
BbvI GCAGC 7 cut(s) 452, 469, 1204, 1279, 1282, 1369, 1669
BccI CCATC 3 cut(s) 26, 599, 1778
BceAI ACGGC 1 cut(s) 73
BcgI CGANNNNNNTGC 4 cut(s) 89, 123, 525, 559
BciT130I CCWGG 2 cut(s) 1558, 1628
BcoDI GTCTC 2 cut(s) 396, 1051
BfaI CTAG 5 cut(s) 219, 581, 717, 1280, 1616
BfmI CTRYAG 2 cut(s) 1296, 1809
BfoI RGCGCY 1 cut(s) 27
BfrI CTTAAG 1 cut(s) 886
BfuAI ACCTGC 1 cut(s) 902
BglII AGATCT 2 cut(s) 1258, 1666
BisI GCNGC 7 cut(s) 466, 483, 1218, 1293, 1296, 1383, 1683
BlpI GCTNAGC 1 cut(s) 11
BlsI GCNGC 7 cut(s) 467, 484, 1219, 1294, 1297, 1384, 1684
Bme1390I CCNGG 2 cut(s) 1558, 1628
Bme18I GGWCC 2 cut(s) 36, 283
BmeT110I CYCGRG 1 cut(s) 263
BmgT120I GGNCC 3 cut(s) 36, 283, 595
BmiI GGNNCC 4 cut(s) 37, 439, 1233, 1512
BmrFI CCNGG 2 cut(s) 1558, 1628
BmsI GCATC 6 cut(s) 567, 1204, 1229, 1384, 1669, 1748
BpiI GAAGAC 3 cut(s) 860, 1326, 1571
BplI GAGNNNNNCTC 6 cut(s) 143, 175, 1700, 1732, 1702, 1734
BpmI CTGGAG 1 cut(s) 581
Bpu1102I GCTNAGC 1 cut(s) 11
BpuEI CTTGAG 2 cut(s) 164, 184
BsaBI GATNNNNATC 1 cut(s) 1788
BsaJI CCNNGG 1 cut(s) 1506
BsaXI ACNNNNNCTCC 2 cut(s) 548, 578
Bsc4I CCNNNNNNNGG 4 cut(s) 33, 703, 1330, 1442
Bse1I ACTGG 4 cut(s) 285, 1359, 1459, 1643
Bse3DI GCAATG 1 cut(s) 738
Bse8I GATNNNNATC 1 cut(s) 1788
BseBI CCWGG 2 cut(s) 1558, 1628
BseDI CCNNGG 1 cut(s) 1506
BseJI GATNNNNATC 1 cut(s) 1788
BseLI CCNNNNNNNGG 4 cut(s) 33, 703, 1330, 1442
BseMI GCAATG 1 cut(s) 738
BseMII CTCAG 2 cut(s) 712, 998
BseNI ACTGG 4 cut(s) 285, 1359, 1459, 1643
BseRI GAGGAG 1 cut(s) 569
BseSI GKGCMC 1 cut(s) 1515
BseXI GCAGC 7 cut(s) 452, 469, 1204, 1279, 1282, 1369, 1669
BseYI CCCAGC 2 cut(s) 1586, 1685
Bsh1236I CGCG 1 cut(s) 472
BshFI GGCC 4 cut(s) 60, 597, 729, 1663
BshNI GGYRCC 1 cut(s) 1510
BsiHKCI CYCGRG 1 cut(s) 263
BsiSI CCGG 1 cut(s) 27
BslFI GGGAC 2 cut(s) 49, 359
BslI CCNNNNNNNGG 4 cut(s) 33, 703, 1330, 1442
BsmAI GTCTC 2 cut(s) 396, 1051
BsmFI GGGAC 2 cut(s) 49, 359
BsnI GGCC 4 cut(s) 60, 597, 729, 1663
BsoBI CYCGRG 1 cut(s) 263
Bsp1286I GDGCHC 2 cut(s) 1515, 1542
Bsp143I GATC 5 cut(s) 96, 253, 1258, 1591, 1666
Bsp1720I GCTNAGC 1 cut(s) 11
BspACI CCGC 2 cut(s) 39, 93
BspANI GGCC 4 cut(s) 60, 597, 729, 1663
BspCNI CTCAG 2 cut(s) 711, 999
BspFNI CGCG 1 cut(s) 472
BspLI GGNNCC 4 cut(s) 37, 439, 1233, 1512
BspMAI CTGCAG 2 cut(s) 1300, 1813
BspMI ACCTGC 1 cut(s) 902
BspPI GGATC 2 cut(s) 104, 1599
BspT107I GGYRCC 1 cut(s) 1510
BspTI CTTAAG 1 cut(s) 886
BsrDI GCAATG 1 cut(s) 738
BsrI ACTGG 4 cut(s) 285, 1359, 1459, 1643
BssECI CCNNGG 1 cut(s) 1506
BssMI GATC 5 cut(s) 96, 253, 1258, 1591, 1666
BssT1I CCWWGG 1 cut(s) 1506
Bst2UI CCWGG 2 cut(s) 1558, 1628
Bst4CI ACNGT 5 cut(s) 330, 874, 1019, 1277, 1363
Bst6I CTCTTC 1 cut(s) 1054
BstAFI CTTAAG 1 cut(s) 886
BstAPI GCANNNNNTGC 1 cut(s) 1571
BstC8I GCNNGC 5 cut(s) 62, 130, 470, 1489, 1563
BstDEI CTNAG 3 cut(s) 11, 698, 1007
BstENI CCTNNNNNAGG 1 cut(s) 1328
BstFNI CGCG 1 cut(s) 472
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 3 cut(s) 26, 474, 1078
BstKTI GATC 5 cut(s) 99, 256, 1261, 1594, 1669
BstMAI GTCTC 2 cut(s) 396, 1051
BstMBI GATC 5 cut(s) 96, 253, 1258, 1591, 1666
BstMWI GCNNNNNNNGC 5 cut(s) 21, 47, 471, 1571, 1679
BstNI CCWGG 2 cut(s) 1558, 1628
BstNSI RCATGY 2 cut(s) 621, 1198
BstSCI CCNGG 2 cut(s) 1556, 1626
BstSFI CTRYAG 2 cut(s) 1296, 1809
BstSLI GKGCMC 1 cut(s) 1515
BstUI CGCG 1 cut(s) 472
BstV1I GCAGC 7 cut(s) 452, 469, 1204, 1279, 1282, 1369, 1669
BstV2I GAAGAC 3 cut(s) 860, 1326, 1571
BstX2I RGATCY 3 cut(s) 1258, 1591, 1666
BstXI CCANNNNNNTGG 1 cut(s) 605
BstYI RGATCY 3 cut(s) 1258, 1591, 1666
BsuRI GGCC 4 cut(s) 60, 597, 729, 1663
BtsI GCAGTG 1 cut(s) 175
BtsIMutI CAGTG 4 cut(s) 175, 536, 706, 1352
BveI ACCTGC 1 cut(s) 902
Cac8I GCNNGC 5 cut(s) 62, 130, 470, 1489, 1563
CaiI CAGNNNCTG 1 cut(s) 1828
CfoI GCGC 3 cut(s) 26, 474, 1078
Cfr13I GGNCC 3 cut(s) 36, 283, 595
Csp6I GTAC 5 cut(s) 278, 891, 1015, 1088, 1820
CviQI GTAC 5 cut(s) 278, 891, 1015, 1088, 1820
DdeI CTNAG 3 cut(s) 11, 698, 1007
DpnI GATC 5 cut(s) 98, 255, 1260, 1593, 1668
DpnII GATC 5 cut(s) 96, 253, 1258, 1591, 1666
DraI TTTAAA 1 cut(s) 1473
EaeI YGGCCR 1 cut(s) 727
Eam1104I CTCTTC 1 cut(s) 1054
EarI CTCTTC 1 cut(s) 1054
Eco130I CCWWGG 1 cut(s) 1506
Eco24I GRGCYC 1 cut(s) 1542
Eco47I GGWCC 2 cut(s) 36, 283
Eco57I CTGAAG 1 cut(s) 1275
Eco88I CYCGRG 1 cut(s) 263
EcoNI CCTNNNNNAGG 1 cut(s) 1328
EcoRII CCWGG 2 cut(s) 1556, 1626
EcoT14I CCWWGG 1 cut(s) 1506
EcoT38I GRGCYC 1 cut(s) 1542
ErhI CCWWGG 1 cut(s) 1506
FalI AAGNNNNNCTT 2 cut(s) 126, 158
FaqI GGGAC 2 cut(s) 49, 359
FauI CCCGC 1 cut(s) 86
Fnu4HI GCNGC 7 cut(s) 466, 483, 1218, 1293, 1296, 1383, 1683
FriOI GRGCYC 1 cut(s) 1542
Fsp4HI GCNGC 7 cut(s) 466, 483, 1218, 1293, 1296, 1383, 1683
FspBI CTAG 5 cut(s) 219, 581, 717, 1280, 1616
GlaI GCGC 3 cut(s) 25, 473, 1077
GluI GCNGC 7 cut(s) 466, 483, 1218, 1293, 1296, 1383, 1683
GsaI CCCAGC 2 cut(s) 1590, 1689
GsuI CTGGAG 1 cut(s) 581
HaeII RGCGCY 1 cut(s) 27
HaeIII GGCC 4 cut(s) 60, 597, 729, 1663
HapII CCGG 1 cut(s) 27
HhaI GCGC 3 cut(s) 26, 474, 1078
Hin6I GCGC 3 cut(s) 24, 472, 1076
HinP1I GCGC 3 cut(s) 24, 472, 1076
HincII GTYRAC 2 cut(s) 549, 1554
HindII GTYRAC 2 cut(s) 549, 1554
HpaI GTTAAC 1 cut(s) 549
HpaII CCGG 1 cut(s) 27
HphI GGTGA 2 cut(s) 787, 1744
Hpy166II GTNNAC 4 cut(s) 549, 778, 1273, 1554
Hpy188III TCNNGA 6 cut(s) 100, 143, 219, 242, 422, 1607
Hpy8I GTNNAC 4 cut(s) 549, 778, 1273, 1554
HpyAV CCTTC 6 cut(s) 191, 455, 566, 667, 1528, 1604
HpyCH4III ACNGT 5 cut(s) 330, 874, 1019, 1277, 1363
HpyCH4IV ACGT 2 cut(s) 78, 640
HpyF10VI GCNNNNNNNGC 5 cut(s) 21, 47, 471, 1571, 1679
HpyF3I CTNAG 3 cut(s) 11, 698, 1007
HpySE526I ACGT 2 cut(s) 78, 640
HspAI GCGC 3 cut(s) 24, 472, 1076
KspAI GTTAAC 1 cut(s) 549
Kzo9I GATC 5 cut(s) 96, 253, 1258, 1591, 1666
LmnI GCTCC 1 cut(s) 556
Lsp1109I GCAGC 7 cut(s) 452, 469, 1204, 1279, 1282, 1369, 1669
LweI GCATC 6 cut(s) 567, 1204, 1229, 1384, 1669, 1748
MaeI CTAG 5 cut(s) 219, 581, 717, 1280, 1616
MaeII ACGT 2 cut(s) 78, 640
MaeIII GTNAC 3 cut(s) 937, 1069, 1414
MalI GATC 5 cut(s) 98, 255, 1260, 1593, 1668
MboI GATC 5 cut(s) 96, 253, 1258, 1591, 1666
MflI RGATCY 3 cut(s) 1258, 1591, 1666
MhlI GDGCHC 2 cut(s) 1515, 1542
MlsI TGGCCA 1 cut(s) 729
MluNI TGGCCA 1 cut(s) 729
MlyI GAGTC 2 cut(s) 175, 974
MmeI TCCRAC 1 cut(s) 253
Mox20I TGGCCA 1 cut(s) 729
MscI TGGCCA 1 cut(s) 729
MslI CAYNNNNRTG 2 cut(s) 603, 1173
Msp20I TGGCCA 1 cut(s) 729
MspCI CTTAAG 1 cut(s) 886
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 2 cut(s) 1558, 1628
MvaI CCWGG 2 cut(s) 1558, 1628
MvnI CGCG 1 cut(s) 472
MwoI GCNNNNNNNGC 5 cut(s) 21, 47, 471, 1571, 1679
NdeII GATC 5 cut(s) 96, 253, 1258, 1591, 1666
NlaIV GGNNCC 4 cut(s) 37, 439, 1233, 1512
NmuCI GTSAC 1 cut(s) 1414
NspI RCATGY 2 cut(s) 621, 1198
PfeI GAWTC 8 cut(s) 293, 337, 418, 1003, 1139, 1438, 1637, 1825
PkrI GCNGC 7 cut(s) 467, 484, 1219, 1294, 1297, 1384, 1684
PleI GAGTC 2 cut(s) 174, 973
PpsI GAGTC 2 cut(s) 174, 973
PsiI TTATAA 1 cut(s) 311
Psp1406I AACGTT 1 cut(s) 78
Psp6I CCWGG 2 cut(s) 1556, 1626
PspFI CCCAGC 2 cut(s) 1586, 1685
PspGI CCWGG 2 cut(s) 1556, 1626
PspN4I GGNNCC 4 cut(s) 37, 439, 1233, 1512
PspPI GGNCC 3 cut(s) 36, 283, 595
PsrI GAACNNNNNNTAC 2 cut(s) 1184, 1216
PstI CTGCAG 2 cut(s) 1300, 1813
PstNI CAGNNNCTG 1 cut(s) 1828
PsuI RGATCY 3 cut(s) 1258, 1591, 1666
RsaI GTAC 5 cut(s) 279, 892, 1016, 1089, 1821
RsaNI GTAC 5 cut(s) 278, 891, 1015, 1088, 1820
RseI CAYNNNNRTG 2 cut(s) 603, 1173
SatI GCNGC 7 cut(s) 466, 483, 1218, 1293, 1296, 1383, 1683
Sau3AI GATC 5 cut(s) 96, 253, 1258, 1591, 1666
Sau96I GGNCC 3 cut(s) 36, 283, 595
SchI GAGTC 2 cut(s) 175, 974
ScrFI CCNGG 2 cut(s) 1558, 1628
SduI GDGCHC 2 cut(s) 1515, 1542
SfaNI GCATC 6 cut(s) 567, 1204, 1229, 1384, 1669, 1748
SfcI CTRYAG 2 cut(s) 1296, 1809
SinI GGWCC 2 cut(s) 36, 283
SmiMI CAYNNNNRTG 2 cut(s) 603, 1173
SmlI CTYRAG 3 cut(s) 143, 163, 886
SmoI CTYRAG 3 cut(s) 143, 163, 886
SsiI CCGC 2 cut(s) 39, 93
SspMI CTAG 5 cut(s) 219, 581, 717, 1280, 1616
StyD4I CCNGG 2 cut(s) 1556, 1626
StyI CCWWGG 1 cut(s) 1506
TaaI ACNGT 5 cut(s) 330, 874, 1019, 1277, 1363
TaiI ACGT 2 cut(s) 81, 643
TaqI TCGA 2 cut(s) 99, 389
TatI WGTACW 2 cut(s) 1014, 1819
TfiI GAWTC 8 cut(s) 293, 337, 418, 1003, 1139, 1438, 1637, 1825
TscAI CASTG 4 cut(s) 182, 543, 706, 1359
TseFI GTSAC 1 cut(s) 1414
TseI GCWGC 7 cut(s) 465, 482, 1217, 1292, 1295, 1382, 1682
Tsp45I GTSAC 1 cut(s) 1414
TspDTI ATGAA 8 cut(s) 195, 534, 993, 1167, 1292, 1430, 1571, 1586
TspRI CASTG 4 cut(s) 182, 543, 706, 1359
Vha464I CTTAAG 1 cut(s) 886
VpaK11BI GGWCC 2 cut(s) 36, 283
XagI CCTNNNNNAGG 1 cut(s) 1328
XapI RAATTY 3 cut(s) 662, 794, 881
XbaI TCTAGA 1 cut(s) 218
XceI RCATGY 2 cut(s) 621, 1198
XspI CTAG 5 cut(s) 219, 581, 717, 1280, 1616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.