RchiOBHm_Chr2g0125011

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001605
Physical Location & Seq
Reverse (-)
38598932 .. 38600338
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1407 bp
ATGAATGAAGCTCCATTCTGGAGCATCACAATTGATGACAAGTTATCCAGCGAGGAGTTGTTCAAACACATAAAAGGAGCAAAGGAAAGGCTAGCTCAGTTTCAAAGACCAAAACCAAAGATCCAAAGGGTTCCCTACACGCTTAGAGATCACAAAAAATTTGAGAAATACTATGAGCCAAGGGCAGTAGCAATTGGTCCTTTCCATCATGATAAACCAAGGTGTCAACTGGCAGAGAATTTCAAGCTTGCAATGGCAGAAAAATTTATCGAAGACAGCGGCCGTCAGGTTGAATATTTGCACAAGATCATTGAGGACAACATCAACACACTAAAGGACTGCTATGATGAGGAAGCAACAAGGTACTACACCGACGAGGCCCTCACAAACTTGTTATTCTTAGATGGGTGTTCAACCTTACAGTTCATATACTCATTTGTGAATAACCAGTTAGCAAATTTCATGATCAAGAGGGATCAGGTGGCTTTTGCAGAACAGGACTTGTTCCTGCTAGAAAACCAACTCCCTTACCAAGTCCTCAAGCTGTTGATGAGCGCAAGTGCCAAAGAGATGGACTTGAAGTCTGCAATCGATGGATTTGTTGGAAGGAACATCATGGCAGAAGAAAAAAAAGGGAAACGGGACGAACCCAAAAAATGTAGTCAACAAGGATATGGTGTCATAGACAAGGAAGAGCCCACTCATCTTCTCGAGCTTCTCCGGACAAAAATGCTAGGCCCCAAATCTAACAACAGCACGGAGACTCATCTTCTCGAGCTTCTCTGGACAAAAATGCTACGCTGCAAATGTGACAACAGCACGGAGAAAAAAGGCCAACAATCATTCCGCAACATACAGGAGCTTAAAGCAGCAGGGATCCATTTAAGGCGTAGTAAGACAGGGACTTTGAGGGACATATCTTTTACTCATCCTCTAGGGCTTCTAGGCTTTCAAGGATTCCTAAATCTTCCACCACTATCTGTAGATGACTCCATGGGGCCCAAGTTCTTGAATTTGATAGCCTATGAGATGTGTCCTGATTTCCAAAATGACTCTGGGGTCACCTCTTACATATGCTTCCTGGATTCACTAATTGATCATGCAGATGATGTTAAACAGCTAAGGAAGGCACACATACTACACAATTTACTTGGGAGTGATGAAGAGGTGGCTAAACTTTTCAATAAGATAGGTACTGATTTGGTGCCTAACAGTGAAACATACCACGGTGTCAAAGACAAATTAGAAAAGCACTACAAAAACATGTGGAAAACCTGGATGGCTCAATTCTGTCACGATCATTTCAGTAGCCCCTGGACTATCCTGGCTTTCCTTGGTGTTCTAGCAGCTCTAGGGTTAAGCGGCATCCAGACCTGGTACACAGTCAATTCTCCCTCCTCTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

468

Amino Acids

53.76

Weight (kDa)

6.77

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 41 - 451 4.5e-94 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1058
AccB1I GGYRCC 1 cut(s) 1204
AccIII TCCGGA 1 cut(s) 720
AciI CCGC 3 cut(s) 279, 847, 1362
AclWI GGATC 4 cut(s) 115, 483, 871, 884
AcoI YGGCCR 1 cut(s) 280
AcsI RAATTY 5 cut(s) 158, 238, 263, 457, 1012
AfaI GTAC 3 cut(s) 365, 1195, 1379
AflIII ACRYGT 1 cut(s) 1263
AgsI TTSAA 9 cut(s) 64, 104, 244, 293, 414, 580, 953, 1012, 1183
AhdI GACNNNNNGTC 1 cut(s) 580
AjnI CCWGG 5 cut(s) 1080, 1274, 1313, 1323, 1373
AluBI AGCT 9 cut(s) 11, 95, 247, 544, 715, 778, 862, 1120, 1349
AluI AGCT 9 cut(s) 11, 95, 247, 544, 715, 778, 862, 1120, 1349
Alw26I GTCTC 1 cut(s) 755
AlwI GGATC 4 cut(s) 115, 483, 871, 884
Ama87I CYCGRG 2 cut(s) 710, 773
Aor13HI TCCGGA 1 cut(s) 720
AoxI GGCC 5 cut(s) 280, 378, 736, 832, 998
ApaI GGGCCC 1 cut(s) 1002
ApeKI GCWGC 3 cut(s) 801, 869, 1346
ApoI RAATTY 5 cut(s) 158, 238, 263, 457, 1012
ArsI GACNNNNNNTTYG 2 cut(s) 889, 921
AspLEI GCGC 1 cut(s) 557
AspS9I GGNCC 5 cut(s) 197, 379, 737, 998, 999
AsuHPI GGTGA 1 cut(s) 1054
AsuNHI GCTAGC 1 cut(s) 91
AvaI CYCGRG 2 cut(s) 710, 773
AvaII GGWCC 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 1002
BamHI GGATCC 1 cut(s) 876
BanI GGYRCC 1 cut(s) 1204
BanII GRGCYC 2 cut(s) 699, 1002
BbsI GAAGAC 1 cut(s) 279
BbvI GCAGC 3 cut(s) 788, 881, 1358
BccI CCATC 5 cut(s) 213, 398, 565, 587, 1273
BceAI ACGGC 1 cut(s) 267
BciT130I CCWGG 5 cut(s) 1082, 1276, 1315, 1325, 1375
BclI TGATCA 2 cut(s) 465, 1096
BcoDI GTCTC 1 cut(s) 755
BfaI CTAG 7 cut(s) 92, 512, 734, 935, 944, 1343, 1352
BfmI CTRYAG 1 cut(s) 981
BisI GCNGC 5 cut(s) 280, 802, 870, 1347, 1363
BlsI GCNGC 5 cut(s) 281, 803, 871, 1348, 1364
Bme1390I CCNGG 5 cut(s) 1082, 1276, 1315, 1325, 1375
Bme18I GGWCC 1 cut(s) 197
BmeRI GACNNNNNGTC 1 cut(s) 580
BmeT110I CYCGRG 2 cut(s) 710, 773
BmgT120I GGNCC 5 cut(s) 197, 379, 737, 998, 999
BmiI GGNNCC 6 cut(s) 132, 739, 878, 999, 1000, 1206
BmrFI CCNGG 5 cut(s) 1082, 1276, 1315, 1325, 1375
BmsI GCATC 2 cut(s) 33, 1374
BmtI GCTAGC 1 cut(s) 95
BpiI GAAGAC 1 cut(s) 279
BpmI CTGGAG 1 cut(s) 40
Bpu10I CCTNAGC 1 cut(s) 1121
BpuEI CTTGAG 1 cut(s) 524
Bsa29I ATCGAT 1 cut(s) 591
BsaJI CCNNGG 6 cut(s) 179, 218, 993, 1225, 1313, 1333
BsaWI WCCGGW 1 cut(s) 720
Bse1I ACTGG 2 cut(s) 234, 448
Bse3DI GCAATG 1 cut(s) 258
BseAI TCCGGA 1 cut(s) 720
BseBI CCWGG 5 cut(s) 1082, 1276, 1315, 1325, 1375
BseCI ATCGAT 1 cut(s) 591
BseDI CCNNGG 6 cut(s) 179, 218, 993, 1225, 1313, 1333
BseGI GGATG 3 cut(s) 928, 1284, 1365
BseMI GCAATG 1 cut(s) 258
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 2 cut(s) 234, 448
BseRI GAGGAG 2 cut(s) 68, 1387
BseSI GKGCMC 1 cut(s) 1002
BseX3I CGGCCG 1 cut(s) 280
BseXI GCAGC 3 cut(s) 788, 881, 1358
Bsh1285I CGRYCG 1 cut(s) 283
BshFI GGCC 5 cut(s) 282, 380, 738, 834, 1000
BshNI GGYRCC 1 cut(s) 1204
BshVI ATCGAT 1 cut(s) 591
BsiEI CGRYCG 1 cut(s) 283
BsiHKCI CYCGRG 2 cut(s) 710, 773
BsiSI CCGG 1 cut(s) 721
BslFI GGGAC 3 cut(s) 656, 916, 926
BsmAI GTCTC 1 cut(s) 755
BsmFI GGGAC 3 cut(s) 656, 916, 926
BsnI GGCC 5 cut(s) 282, 380, 738, 834, 1000
BsoBI CYCGRG 2 cut(s) 710, 773
Bsp120I GGGCCC 1 cut(s) 998
Bsp1286I GDGCHC 2 cut(s) 699, 1002
Bsp13I TCCGGA 1 cut(s) 720
Bsp143I GATC 8 cut(s) 120, 148, 306, 465, 475, 876, 1096, 1297
Bsp19I CCATGG 1 cut(s) 993
BspACI CCGC 3 cut(s) 279, 847, 1362
BspANI GGCC 5 cut(s) 282, 380, 738, 834, 1000
BspCNI CTCAG 1 cut(s) 109
BspDI ATCGAT 1 cut(s) 591
BspEI TCCGGA 1 cut(s) 720
BspHI TCATGA 2 cut(s) 208, 462
BspLI GGNNCC 6 cut(s) 132, 739, 878, 999, 1000, 1206
BspOI GCTAGC 1 cut(s) 95
BspPI GGATC 4 cut(s) 115, 483, 871, 884
BspQI GCTCTTC 1 cut(s) 687
BspT107I GGYRCC 1 cut(s) 1204
BsrDI GCAATG 1 cut(s) 258
BsrI ACTGG 2 cut(s) 234, 448
BssECI CCNNGG 6 cut(s) 179, 218, 993, 1225, 1313, 1333
BssMI GATC 8 cut(s) 120, 148, 306, 465, 475, 876, 1096, 1297
BssT1I CCWWGG 4 cut(s) 179, 218, 993, 1333
Bst2UI CCWGG 5 cut(s) 1082, 1276, 1315, 1325, 1375
Bst4CI ACNGT 4 cut(s) 423, 1214, 1229, 1384
Bst6I CTCTTC 2 cut(s) 687, 1158
BstC8I GCNNGC 2 cut(s) 93, 249
BstDEI CTNAG 4 cut(s) 96, 143, 400, 1121
BstDSI CCRYGG 2 cut(s) 993, 1225
BstEII GGTNACC 1 cut(s) 1060
BstF5I GGATG 3 cut(s) 928, 1284, 1365
BstHHI GCGC 1 cut(s) 557
BstKTI GATC 8 cut(s) 123, 151, 309, 468, 478, 879, 1099, 1300
BstMAI GTCTC 1 cut(s) 755
BstMBI GATC 8 cut(s) 120, 148, 306, 465, 475, 876, 1096, 1297
BstMCI CGRYCG 1 cut(s) 283
BstNI CCWGG 5 cut(s) 1082, 1276, 1315, 1325, 1375
BstNSI RCATGY 1 cut(s) 1267
BstPI GGTNACC 1 cut(s) 1060
BstSCI CCNGG 5 cut(s) 1080, 1274, 1313, 1323, 1373
BstSFI CTRYAG 1 cut(s) 981
BstSLI GKGCMC 1 cut(s) 1002
BstV1I GCAGC 3 cut(s) 788, 881, 1358
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 2 cut(s) 120, 876
BstXI CCANNNNNNTGG 1 cut(s) 571
BstYI RGATCY 2 cut(s) 120, 876
BstZI CGGCCG 1 cut(s) 280
Bsu15I ATCGAT 1 cut(s) 591
BsuRI GGCC 5 cut(s) 282, 380, 738, 834, 1000
BsuTUI ATCGAT 1 cut(s) 591
BtgI CCRYGG 2 cut(s) 993, 1225
BtsCI GGATG 3 cut(s) 928, 1284, 1365
BtsIMutI CAGTG 1 cut(s) 1219
Cac8I GCNNGC 2 cut(s) 93, 249
CciI TCATGA 2 cut(s) 208, 462
CfoI GCGC 1 cut(s) 557
Cfr13I GGNCC 5 cut(s) 197, 379, 737, 998, 999
ClaI ATCGAT 1 cut(s) 591
CsiI ACCWGGT 1 cut(s) 1373
Csp6I GTAC 3 cut(s) 364, 1194, 1378
CviAII CATG 6 cut(s) 209, 463, 616, 994, 1100, 1264
CviQI GTAC 3 cut(s) 364, 1194, 1378
DdeI CTNAG 4 cut(s) 96, 143, 400, 1121
DpnI GATC 8 cut(s) 122, 150, 308, 467, 477, 878, 1098, 1299
DpnII GATC 8 cut(s) 120, 148, 306, 465, 475, 876, 1096, 1297
DrdI GACNNNNNNGTC 1 cut(s) 1058
DriI GACNNNNNGTC 1 cut(s) 580
DseDI GACNNNNNNGTC 1 cut(s) 1058
EaeI YGGCCR 1 cut(s) 280
EagI CGGCCG 1 cut(s) 280
Eam1104I CTCTTC 2 cut(s) 687, 1158
Eam1105I GACNNNNNGTC 1 cut(s) 580
EarI CTCTTC 2 cut(s) 687, 1158
EclXI CGGCCG 1 cut(s) 280
Eco130I CCWWGG 4 cut(s) 179, 218, 993, 1333
Eco24I GRGCYC 2 cut(s) 699, 1002
Eco47I GGWCC 1 cut(s) 197
Eco52I CGGCCG 1 cut(s) 280
Eco88I CYCGRG 2 cut(s) 710, 773
Eco91I GGTNACC 1 cut(s) 1060
EcoO109I RGGNCCY 3 cut(s) 379, 737, 998
EcoO65I GGTNACC 1 cut(s) 1060
EcoRII CCWGG 5 cut(s) 1080, 1274, 1313, 1323, 1373
EcoT14I CCWWGG 4 cut(s) 179, 218, 993, 1333
EcoT38I GRGCYC 2 cut(s) 699, 1002
ErhI CCWWGG 4 cut(s) 179, 218, 993, 1333
FaeI CATG 6 cut(s) 212, 466, 619, 997, 1103, 1267
FaqI GGGAC 3 cut(s) 656, 916, 926
FatI CATG 6 cut(s) 208, 462, 615, 993, 1099, 1263
FauNDI CATATG 1 cut(s) 1073
FbaI TGATCA 2 cut(s) 465, 1096
Fnu4HI GCNGC 5 cut(s) 280, 802, 870, 1347, 1363
FokI GGATG 3 cut(s) 915, 1291, 1352
FriOI GRGCYC 2 cut(s) 699, 1002
Fsp4HI GCNGC 5 cut(s) 280, 802, 870, 1347, 1363
FspBI CTAG 7 cut(s) 92, 512, 734, 935, 944, 1343, 1352
GlaI GCGC 1 cut(s) 556
GluI GCNGC 5 cut(s) 280, 802, 870, 1347, 1363
GsuI CTGGAG 1 cut(s) 40
HaeIII GGCC 5 cut(s) 282, 380, 738, 834, 1000
HapII CCGG 1 cut(s) 721
HhaI GCGC 1 cut(s) 557
Hin1II CATG 6 cut(s) 212, 466, 619, 997, 1103, 1267
Hin6I GCGC 1 cut(s) 555
HinP1I GCGC 1 cut(s) 555
HincII GTYRAC 2 cut(s) 227, 665
HindII GTYRAC 2 cut(s) 227, 665
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 5 cut(s) 763, 957, 989, 1052, 1085
HpaII CCGG 1 cut(s) 721
HphI GGTGA 1 cut(s) 1054
Hpy166II GTNNAC 3 cut(s) 227, 665, 1380
Hpy8I GTNNAC 3 cut(s) 227, 665, 1380
Hpy99I CGWCG 1 cut(s) 377
HpyAV CCTTC 2 cut(s) 600, 1120
HpyCH4III ACNGT 4 cut(s) 423, 1214, 1229, 1384
HpyCH4V TGCA 6 cut(s) 251, 301, 491, 587, 804, 1103
HpyF3I CTNAG 4 cut(s) 96, 143, 400, 1121
Hsp92II CATG 6 cut(s) 212, 466, 619, 997, 1103, 1267
HspAI GCGC 1 cut(s) 555
Kpn2I TCCGGA 1 cut(s) 720
Ksp22I TGATCA 2 cut(s) 465, 1096
Kzo9I GATC 8 cut(s) 120, 148, 306, 465, 475, 876, 1096, 1297
LguI GCTCTTC 1 cut(s) 687
LmnI GCTCC 4 cut(s) 16, 21, 77, 859
Lsp1109I GCAGC 3 cut(s) 788, 881, 1358
LweI GCATC 2 cut(s) 33, 1374
MabI ACCWGGT 1 cut(s) 1373
MaeI CTAG 7 cut(s) 92, 512, 734, 935, 944, 1343, 1352
MaeIII GTNAC 3 cut(s) 809, 1060, 1292
MalI GATC 8 cut(s) 122, 150, 308, 467, 477, 878, 1098, 1299
MboI GATC 8 cut(s) 120, 148, 306, 465, 475, 876, 1096, 1297
MboII GAAGA 8 cut(s) 284, 635, 698, 704, 761, 959, 1175, 1392
MfeI CAATTG 2 cut(s) 30, 192
MflI RGATCY 2 cut(s) 120, 876
MhlI GDGCHC 2 cut(s) 699, 1002
MlyI GAGTC 3 cut(s) 757, 983, 1046
MmeI TCCRAC 1 cut(s) 583
MroI TCCGGA 1 cut(s) 720
MseI TTAA 4 cut(s) 864, 884, 1113, 1358
MslI CAYNNNNRTG 1 cut(s) 1104
MspA1I CMGCKG 1 cut(s) 279
MspI CCGG 1 cut(s) 721
MspR9I CCNGG 5 cut(s) 1082, 1276, 1315, 1325, 1375
MunI CAATTG 2 cut(s) 30, 192
MvaI CCWGG 5 cut(s) 1082, 1276, 1315, 1325, 1375
NcoI CCATGG 1 cut(s) 993
NdeI CATATG 1 cut(s) 1073
NdeII GATC 8 cut(s) 120, 148, 306, 465, 475, 876, 1096, 1297
NheI GCTAGC 1 cut(s) 91
NlaIII CATG 6 cut(s) 212, 466, 619, 997, 1103, 1267
NlaIV GGNNCC 6 cut(s) 132, 739, 878, 999, 1000, 1206
NmuCI GTSAC 3 cut(s) 809, 1060, 1292
NspI RCATGY 1 cut(s) 1267
PaeR7I CTCGAG 2 cut(s) 710, 773
PagI TCATGA 2 cut(s) 208, 462
PciI ACATGT 1 cut(s) 1263
PciSI GCTCTTC 1 cut(s) 687
PfeI GAWTC 2 cut(s) 957, 1085
PfoI TCCNGGA 1 cut(s) 1080
PkrI GCNGC 5 cut(s) 281, 803, 871, 1348, 1364
PleI GAGTC 3 cut(s) 757, 983, 1046
PpsI GAGTC 3 cut(s) 757, 983, 1046
PscI ACATGT 1 cut(s) 1263
Psp6I CCWGG 5 cut(s) 1080, 1274, 1313, 1323, 1373
PspEI GGTNACC 1 cut(s) 1060
PspGI CCWGG 5 cut(s) 1080, 1274, 1313, 1323, 1373
PspN4I GGNNCC 6 cut(s) 132, 739, 878, 999, 1000, 1206
PspOMI GGGCCC 1 cut(s) 998
PspPI GGNCC 5 cut(s) 197, 379, 737, 998, 999
PsuI RGATCY 2 cut(s) 120, 876
RsaI GTAC 3 cut(s) 365, 1195, 1379
RsaNI GTAC 3 cut(s) 364, 1194, 1378
RseI CAYNNNNRTG 1 cut(s) 1104
SapI GCTCTTC 1 cut(s) 687
SaqAI TTAA 4 cut(s) 864, 884, 1113, 1358
SatI GCNGC 5 cut(s) 280, 802, 870, 1347, 1363
Sau3AI GATC 8 cut(s) 120, 148, 306, 465, 475, 876, 1096, 1297
Sau96I GGNCC 5 cut(s) 197, 379, 737, 998, 999
SchI GAGTC 3 cut(s) 757, 983, 1046
ScrFI CCNGG 5 cut(s) 1082, 1276, 1315, 1325, 1375
SduI GDGCHC 2 cut(s) 699, 1002
SexAI ACCWGGT 1 cut(s) 1373
SfaNI GCATC 2 cut(s) 33, 1374
SfcI CTRYAG 1 cut(s) 981
Sfr274I CTCGAG 2 cut(s) 710, 773
SinI GGWCC 1 cut(s) 197
SlaI CTCGAG 2 cut(s) 710, 773
SmiMI CAYNNNNRTG 1 cut(s) 1104
SmlI CTYRAG 3 cut(s) 539, 710, 773
SmoI CTYRAG 3 cut(s) 539, 710, 773
SsiI CCGC 3 cut(s) 279, 847, 1362
SspI AATATT 1 cut(s) 296
SspMI CTAG 7 cut(s) 92, 512, 734, 935, 944, 1343, 1352
StyD4I CCNGG 5 cut(s) 1080, 1274, 1313, 1323, 1373
StyI CCWWGG 4 cut(s) 179, 218, 993, 1333
TaaI ACNGT 4 cut(s) 423, 1214, 1229, 1384
TaqI TCGA 4 cut(s) 270, 591, 711, 774
TauI GCSGC 2 cut(s) 282, 1365
TfiI GAWTC 2 cut(s) 957, 1085
Tru1I TTAA 4 cut(s) 864, 884, 1113, 1358
Tru9I TTAA 4 cut(s) 864, 884, 1113, 1358
TscAI CASTG 1 cut(s) 1219
TseFI GTSAC 3 cut(s) 809, 1060, 1292
TseI GCWGC 3 cut(s) 801, 869, 1346
Tsp45I GTSAC 3 cut(s) 809, 1060, 1292
TspDTI ATGAA 5 cut(s) 17, 21, 415, 451, 1176
TspGWI ACGGA 2 cut(s) 773, 836
TspRI CASTG 1 cut(s) 1219
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 5 cut(s) 158, 238, 263, 457, 1012
XceI RCATGY 1 cut(s) 1267
XcmI CCANNNNNNNNNTGG 1 cut(s) 1052
XhoI CTCGAG 2 cut(s) 710, 773
XspI CTAG 7 cut(s) 92, 512, 734, 935, 944, 1343, 1352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.