Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001111

Physical Location & Seq

Genomic Coordinates Reverse (-)

20522330 .. 20524164

Gene Structure 1835 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTCAAATCATGCAGAAGGTCCAGCATCGTTCAATGATGCTCTGAGCGAAGGACTGAGTTCATCTTCCGACTGGTCAGCTAGGGTTGCTGCATTTAATTATCTTCGGTCTTTGTTGCAGCCAGGCCAAAGAGGAATTCAGGAAGTGATTCAGAATTTCGAGAAAGTAACAAAGATGTTTTTCCAACACTTGGATAATCTGCACCACAAAATTGCACAAGCAGCCCTTTCAACTCTTGCAGATATTATCCCATCTTGCCATAAGCCCCTTGAAAGTTACATGGAAAGGATCCCACCTCATGTTTTCTCACAGTTAGTTGACCCAGAGGATGCCATCCTGAAATTTTGGCTTCTGAAGTTGACACCATTGGTCCATGATAAATACACTAAACTAAAGGAGGCAGCTGTTGCATGCATAATCTCTGTATACTCCCACTTTGATCCAACATCTTTCTTGAATTTTATTCTTAGCTTGTCAGTTGAAGAACAAAATTCTTTGAGAAGAGCCTTGAAACAAAGTATTCCTGGCATCGAAGTGGACCTTATGAACTTTATGCAAAACAAGAAGGAGAGACAGCGCAAGTCTTCTTATGATCCGTCCGATGCAGTTGGAACATCTTCCGAAGAAGGATACGTTAGTGCCTCAAAGAAGTCATTTCTTTGGGAGGTATTCTACTGGTTCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007026 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009653 GO:0009826 GO:0009987 GO:0010639 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0022607 GO:0030054 GO:0030865 GO:0031023 GO:0031109 GO:0031110 GO:0031111 GO:0031114 GO:0031122 GO:0031647 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0034453 GO:0034622 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043622 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046785 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050821 GO:0051010 GO:0051128 GO:0051129 GO:0051258 GO:0051302 GO:0051493 GO:0051494 GO:0051781 GO:0055044 GO:0060560 GO:0065003 GO:0065007 GO:0065008 GO:0070507 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLASP_N HEAT Vac14_Fab1_bd

Protein Analysis

228

Amino Acids

25.91

Weight (kDa)

6.24

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20190
fragaria_vesca	FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_2g19850 FvH4_4g18130
malus_domestica	MD05G1182800.v1.1 MD10G1170900.v1.1
prunus_persica	Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1 Prupe.8G209400_v2.0.a1
pyrus_communis	pycom05g16790 pycom10g14730
rosa_chinensis	RchiOBHm_Chr1g0330771 RchiOBHm_Chr1g0330781 RchiOBHm_Chr1g0330801 RchiOBHm_Chr6g0285551
rosa_laevigata	RLG00000012628 RLG00000029789 RLG00000029790 RLG00000029796
rosa_multiflora	Rmu_co8432325.1_g000001 Rmu_sc0000723.1_g000001 Rmu_sc0000723.1_g000002 Rmu_sc0001491.1_g000006 Rmu_sc0002725.1_g000020 Rmu_sc0012495.1_g000004 Rmu_sc0017770.1_g000001 Rmu_sc0031058.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319710 Rroxscaffold_4G00319750 Rroxscaffold_4G00319790 Rroxscaffold_4G00319800 Rroxscaffold_4G00319810 Rroxscaffold_7G00183030
rosa_rugosa	Rorug06G0175400
rosa_samantha	Rh1AG108200 Rh1AG109200 Rh1AG110500 Rh1AG111400 Rh1CG105100 Rh1CG105400 Rh1CG105500 Rh1CG106800 Rh2BG359900 Rh2DG376700 Rh4CG127100 Rh6AG287000 Rh6BG288200 Rh6CG289400 Rh6DG282200
rosa_wichuraiana	Rw0G004360 Rw1G008500 Rw1G008580 Rw1G008750 Rw1G008840 Rw6G024670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	190
AccI	GTMKAC	1 cut(s)	426
AclWI	GGATC	4 cut(s)	283, 296, 434, 587
AcsI	RAATTY	5 cut(s)	135, 154, 341, 457, 490
AcuI	CTGAAG	1 cut(s)	374
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	6 cut(s)	34, 231, 272, 457, 482, 511
AjnI	CCWGG	2 cut(s)	121, 523
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AluBI	AGCT	3 cut(s)	80, 404, 471
AluI	AGCT	3 cut(s)	80, 404, 471
Alw26I	GTCTC	1 cut(s)	565
AlwI	GGATC	4 cut(s)	283, 296, 434, 587
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	4 cut(s)	89, 118, 221, 401
ApoI	RAATTY	5 cut(s)	135, 154, 341, 457, 490
Asp700I	GAANNNNTTC	2 cut(s)	147, 616
AspLEI	GCGC	1 cut(s)	579
AspS9I	GGNCC	3 cut(s)	20, 370, 538
AvaII	GGWCC	3 cut(s)	20, 370, 538
BaeI	ACNNNNGTAYC	2 cut(s)	622, 655
BamHI	GGATCC	1 cut(s)	288
BbsI	GAAGAC	1 cut(s)	576
BbvI	GCAGC	4 cut(s)	76, 130, 233, 413
BccI	CCATC	2 cut(s)	259, 341
BciT130I	CCWGG	2 cut(s)	123, 525
BciVI	GTATCC	1 cut(s)	623
BcoDI	GTCTC	1 cut(s)	565
BfaI	CTAG	1 cut(s)	81
BfuI	GTATCC	1 cut(s)	623
BisI	GCNGC	4 cut(s)	90, 119, 222, 402
BlsI	GCNGC	4 cut(s)	91, 120, 223, 403
Bme1390I	CCNGG	2 cut(s)	123, 525
Bme18I	GGWCC	3 cut(s)	20, 370, 538
BmgT120I	GGNCC	3 cut(s)	20, 370, 538
BmiI	GGNNCC	1 cut(s)	290
BmrFI	CCNGG	2 cut(s)	123, 525
BmsI	GCATC	5 cut(s)	28, 35, 319, 537, 592
BpiI	GAAGAC	1 cut(s)	576
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse1I	ACTGG	2 cut(s)	77, 680
BseBI	CCWGG	2 cut(s)	123, 525
BseGI	GGATG	2 cut(s)	333, 334
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMII	CTCAG	2 cut(s)	35, 47
BseNI	ACTGG	2 cut(s)	77, 680
BseXI	GCAGC	4 cut(s)	76, 130, 233, 413
BsgI	GTGCAG	1 cut(s)	185
BshFI	GGCC	1 cut(s)	126
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	565
BsnI	GGCC	1 cut(s)	126
Bsp143I	GATC	3 cut(s)	288, 439, 592
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	2 cut(s)	36, 48
BspLI	GGNNCC	1 cut(s)	290
BspPI	GGATC	4 cut(s)	283, 296, 434, 587
BspQI	GCTCTTC	1 cut(s)	496
BsrI	ACTGG	2 cut(s)	77, 680
BssMI	GATC	3 cut(s)	288, 439, 592
BssNAI	GTATAC	1 cut(s)	427
Bst1107I	GTATAC	1 cut(s)	427
Bst2UI	CCWGG	2 cut(s)	123, 525
Bst4CI	ACNGT	1 cut(s)	312
Bst6I	CTCTTC	1 cut(s)	496
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	3 cut(s)	44, 56, 467
BstF5I	GGATG	2 cut(s)	333, 334
BstHHI	GCGC	1 cut(s)	579
BstKTI	GATC	3 cut(s)	291, 442, 595
BstMAI	GTCTC	1 cut(s)	565
BstMBI	GATC	3 cut(s)	288, 439, 592
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 221, 407
BstNI	CCWGG	2 cut(s)	123, 525
BstNSI	RCATGY	1 cut(s)	414
BstSCI	CCNGG	2 cut(s)	121, 523
BstV1I	GCAGC	4 cut(s)	76, 130, 233, 413
BstV2I	GAAGAC	1 cut(s)	576
BstX2I	RGATCY	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	288
BstZ17I	GTATAC	1 cut(s)	427
BsuI	GTATCC	1 cut(s)	623
BsuRI	GGCC	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	333, 334
Cac8I	GCNNGC	1 cut(s)	412
CfoI	GCGC	1 cut(s)	579
Cfr13I	GGNCC	3 cut(s)	20, 370, 538
CviAII	CATG	5 cut(s)	11, 280, 299, 374, 411
CviJI	RGCY	9 cut(s)	80, 121, 126, 224, 265, 349, 404, 471, 506
CviKI_1	RGCY	9 cut(s)	80, 121, 126, 224, 265, 349, 404, 471, 506
DdeI	CTNAG	3 cut(s)	44, 56, 467
DpnI	GATC	3 cut(s)	290, 441, 594
DpnII	GATC	3 cut(s)	288, 439, 592
Eam1104I	CTCTTC	1 cut(s)	496
EarI	CTCTTC	1 cut(s)	496
Eco47I	GGWCC	3 cut(s)	20, 370, 538
Eco57I	CTGAAG	1 cut(s)	374
EcoRI	GAATTC	1 cut(s)	135
EcoRII	CCWGG	2 cut(s)	121, 523
EcoT22I	ATGCAT	1 cut(s)	416
FaeI	CATG	5 cut(s)	14, 283, 302, 377, 414
FalI	AAGNNNNNCTT	4 cut(s)	210, 242, 525, 557
FatI	CATG	5 cut(s)	10, 279, 298, 373, 410
FblI	GTMKAC	1 cut(s)	426
Fnu4HI	GCNGC	4 cut(s)	90, 119, 222, 402
FokI	GGATG	2 cut(s)	320, 341
Fsp4HI	GCNGC	4 cut(s)	90, 119, 222, 402
FspBI	CTAG	1 cut(s)	81
GlaI	GCGC	1 cut(s)	578
GluI	GCNGC	4 cut(s)	90, 119, 222, 402
HaeIII	GGCC	1 cut(s)	126
HhaI	GCGC	1 cut(s)	579
Hin1II	CATG	5 cut(s)	14, 283, 302, 377, 414
Hin6I	GCGC	1 cut(s)	577
HinP1I	GCGC	1 cut(s)	577
HincII	GTYRAC	2 cut(s)	319, 360
HindII	GTYRAC	2 cut(s)	319, 360
HinfI	GANTC	1 cut(s)	148
Hpy166II	GTNNAC	4 cut(s)	319, 360, 427, 538
Hpy188I	TCNGA	6 cut(s)	45, 70, 153, 354, 601, 622
Hpy188III	TCNNGA	4 cut(s)	140, 160, 337, 454
Hpy8I	GTNNAC	4 cut(s)	319, 360, 427, 538
HpyAV	CCTTC	4 cut(s)	11, 44, 559, 620
HpyCH4III	ACNGT	1 cut(s)	312
HpyCH4IV	ACGT	1 cut(s)	633
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 221, 407
HpyF3I	CTNAG	3 cut(s)	44, 56, 467
HpySE526I	ACGT	1 cut(s)	633
Hsp92II	CATG	5 cut(s)	14, 283, 302, 377, 414
HspAI	GCGC	1 cut(s)	577
Kzo9I	GATC	3 cut(s)	288, 439, 592
LguI	GCTCTTC	1 cut(s)	496
Lsp1109I	GCAGC	4 cut(s)	76, 130, 233, 413
LweI	GCATC	5 cut(s)	28, 35, 319, 537, 592
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	1 cut(s)	633
MaeIII	GTNAC	2 cut(s)	166, 275
MalI	GATC	3 cut(s)	290, 441, 594
MboI	GATC	3 cut(s)	288, 439, 592
MboII	GAAGA	7 cut(s)	57, 95, 494, 513, 576, 609, 635
MflI	RGATCY	1 cut(s)	288
MluCI	AATT	7 cut(s)	97, 135, 154, 210, 341, 457, 490
MmeI	TCCRAC	4 cut(s)	93, 208, 467, 589
MnlI	CCTC	6 cut(s)	125, 306, 319, 391, 652, 658
Mph1103I	ATGCAT	1 cut(s)	416
MroXI	GAANNNNTTC	2 cut(s)	147, 616
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	1 cut(s)	533
MspA1I	CMGCKG	1 cut(s)	404
MspR9I	CCNGG	2 cut(s)	123, 525
MvaI	CCWGG	2 cut(s)	123, 525
MwoI	GCNNNNNNNGC	3 cut(s)	86, 221, 407
NdeII	GATC	3 cut(s)	288, 439, 592
NlaIII	CATG	5 cut(s)	14, 283, 302, 377, 414
NlaIV	GGNNCC	1 cut(s)	290
NsiI	ATGCAT	1 cut(s)	416
NspI	RCATGY	1 cut(s)	414
PaeI	GCATGC	1 cut(s)	414
PciSI	GCTCTTC	1 cut(s)	496
PdmI	GAANNNNTTC	2 cut(s)	147, 616
PfeI	GAWTC	1 cut(s)	148
PflMI	CCANNNNNTGG	1 cut(s)	190
PkrI	GCNGC	4 cut(s)	91, 120, 223, 403
Psp6I	CCWGG	2 cut(s)	121, 523
PspGI	CCWGG	2 cut(s)	121, 523
PspN4I	GGNNCC	1 cut(s)	290
PspPI	GGNCC	3 cut(s)	20, 370, 538
PsuI	RGATCY	1 cut(s)	288
PvuII	CAGCTG	1 cut(s)	404
RseI	CAYNNNNRTG	1 cut(s)	533
SapI	GCTCTTC	1 cut(s)	496
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	4 cut(s)	90, 119, 222, 402
Sau3AI	GATC	3 cut(s)	288, 439, 592
Sau96I	GGNCC	3 cut(s)	20, 370, 538
ScrFI	CCNGG	2 cut(s)	123, 525
SetI	ASST	8 cut(s)	22, 82, 298, 406, 473, 543, 636, 669
SfaNI	GCATC	5 cut(s)	28, 35, 319, 537, 592
SinI	GGWCC	3 cut(s)	20, 370, 538
SmiMI	CAYNNNNRTG	1 cut(s)	533
SphI	GCATGC	1 cut(s)	414
Sse9I	AATT	7 cut(s)	97, 135, 154, 210, 341, 457, 490
SspMI	CTAG	1 cut(s)	81
StyD4I	CCNGG	2 cut(s)	121, 523
TaaI	ACNGT	1 cut(s)	312
TaiI	ACGT	1 cut(s)	636
TaqI	TCGA	2 cut(s)	159, 531
TaqII	GACCGA	1 cut(s)	96
TasI	AATT	7 cut(s)	97, 135, 154, 210, 341, 457, 490
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TseI	GCWGC	4 cut(s)	89, 118, 221, 401
TspDTI	ATGAA	2 cut(s)	51, 560
TspGWI	ACGGA	1 cut(s)	585
Van91I	CCANNNNNTGG	1 cut(s)	190
VpaK11BI	GGWCC	3 cut(s)	20, 370, 538
XapI	RAATTY	5 cut(s)	135, 154, 341, 457, 490
XceI	RCATGY	1 cut(s)	414
XmiI	GTMKAC	1 cut(s)	426
XmnI	GAANNNNTTC	2 cut(s)	147, 616
XspI	CTAG	1 cut(s)	81
Zsp2I	ATGCAT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.