RchiOBHm_Chr0c39g0503291

Methionine adenosyltransferase 2 subunit

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
OG0001020
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 183 bp
ATGAGTAGGAAGAGAGTTTTGATAGTTGGAGGCACAGGTTACTTGGGACAGCATGTATTGCAAGGCTTTGCAGAGATTCAAGAAACCACTCCTTGTGATCTGGCATTTACCCACCACTCAATTCCTCCTCCCCAGGCTTTGCTCAATGCATTTCCTAGTGTGCTGCCTTTCTCTGTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RmlD_sub_bind

Protein Analysis

60

Amino Acids

6.5

Weight (kDa)

6.23

Isoelectric Point (pI)

54.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 80
AjnI CCWGG 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 163
BbvI GCAGC 1 cut(s) 150
BciT130I CCWGG 1 cut(s) 134
BfaI CTAG 1 cut(s) 156
BisI GCNGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 165
Bme1390I CCNGG 1 cut(s) 134
BmrFI CCNGG 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 132
BseBI CCWGG 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 132
BseRI GAGGAG 1 cut(s) 117
BseXI GCAGC 1 cut(s) 150
BslFI GGGAC 1 cut(s) 60
BsmFI GGGAC 1 cut(s) 60
Bsp143I GATC 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 1 cut(s) 97
Bst2UI CCWGG 1 cut(s) 134
Bst6I CTCTTC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 58
BstKTI GATC 1 cut(s) 100
BstMBI GATC 1 cut(s) 97
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstNI CCWGG 1 cut(s) 134
BstNSI RCATGY 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 150
CviAII CATG 1 cut(s) 53
CviJI RGCY 2 cut(s) 66, 137
CviKI_1 RGCY 2 cut(s) 66, 137
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 132
EcoT22I ATGCAT 1 cut(s) 151
FaeI CATG 1 cut(s) 56
FaiI YATR 1 cut(s) 54
FaqI GGGAC 1 cut(s) 60
FatI CATG 1 cut(s) 52
Fnu4HI GCNGC 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 164
FspBI CTAG 1 cut(s) 156
GluI GCNGC 1 cut(s) 164
Hin1II CATG 1 cut(s) 56
HinfI GANTC 1 cut(s) 76
Hpy188III TCNNGA 1 cut(s) 80
HpyCH4V TGCA 3 cut(s) 61, 71, 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
Hsp92II CATG 1 cut(s) 56
Kzo9I GATC 1 cut(s) 97
LpnPI CCDG 4 cut(s) 21, 86, 119, 146
Lsp1109I GCAGC 1 cut(s) 150
MaeI CTAG 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 38
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 1 cut(s) 22
MluCI AATT 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 7
MnlI CCTC 3 cut(s) 23, 135, 138
Mph1103I ATGCAT 1 cut(s) 151
MspR9I CCNGG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 58
NdeII GATC 1 cut(s) 97
NlaIII CATG 1 cut(s) 56
NsiI ATGCAT 1 cut(s) 151
NspI RCATGY 1 cut(s) 56
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 132
PspGI CCWGG 1 cut(s) 132
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 134
SetI ASST 1 cut(s) 40
Sse9I AATT 1 cut(s) 120
SspMI CTAG 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 132
TasI AATT 1 cut(s) 120
TfiI GAWTC 1 cut(s) 76
TseI GCWGC 1 cut(s) 163
XceI RCATGY 1 cut(s) 56
XspI CTAG 1 cut(s) 156
Zsp2I ATGCAT 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.