Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001054

Physical Location & Seq

Genomic Coordinates Reverse (-)

52392128 .. 52392680

Gene Structure 553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009401

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAAAAGGGCTCCAATCCTAAAGCTCTACCCACTGATCATCCGGCCAAAAAGGTCCACTGTGAAATTCCTAGACAGGTCGACTTCAGCAGACCTTAGCGGGATGCATAGAGCCCGCGGGGAAGGGCTTGCACAGCAGCAAGGTCTCCATGGTGAAGTTGTGGCCGAATCCATGGTGCTGCGTTGGGTCAAGGCGGCGGAGCCACCACAGTTGGGTGAAGGAATGGAGCGCGGTGTTCGGGCAGTCTTCCTCTCGGGTCTGGATTCACGATCTAGATCCAGGCTGCATGGGTTTGGGATCGTGGAGTTGGATGGCATCCTCCTCTGGTGGTCCGACAGTGGGGACAGAGCTGCGGCGGTGGAAGCCCGACATCGACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

14.03

Weight (kDa)

10.76

Isoelectric Point (pI)

60.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64500
fragaria_vesca	FvH4_2g10930 FvH4_2g10950 FvH4_2g10950 FvH4_2g10950 FvH4_6g42030
malus_domestica	MD05G1050900.v1.1 MD10G1058300.v1.1 MD12G1201800.v1.1
prunus_persica	Prupe.8G077700_v2.0.a1
pyrus_communis	pycom05g04300 pycom10g04500 pycom12g18820
rosa_chinensis	RchiOBHm_Chr2g0157961 RchiOBHm_Chr6g0269131 RchiOBHm_Chr6g0269161
rosa_laevigata	RLG00000009401 RLG00000013876 RLG00000013877 RLG00000013878 RLG00000013882 RLG00000021038 RLG00000021042
rosa_multiflora	Rmu_sc0000419.1_g000007 Rmu_sc0002120.1_g000003 Rmu_sc0004362.1_g000010 Rmu_ssc0000381.1_g000027
rosa_roxburghii	Rroxscaffold_1G00004920 Rroxscaffold_2G00091820 Rroxscaffold_3G00252830 Rroxscaffold_6G00415270 Rroxscaffold_7G00183520 Rroxscaffold_7G00199000 Rroxscaffold_7G00199020 Rroxscaffold_7G00199180
rosa_rugosa	Rorug02G0464700 Rorug02G0529300 Rorug06G0044900 Rorug06G0044900 Rorug06G0044900 Rorug06G0045000 Rorug06G0045100
rosa_samantha	Rh2AG530300 Rh2BG545000 Rh2CG514700 Rh2DG553200 Rh6AG165700 Rh6BG171100 Rh6BG171300 Rh6CG164700 Rh6CG165000 Rh6DG079900 Rh6DG156200 Rh6DG156600 Rh7AG468700 Rh7BG367400
rosa_wichuraiana	Rw2G043880 Rw6G014240 Rw6G014290 Rw6G014310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	80
AccII	CGCG	2 cut(s)	117, 231
AciI	CCGC	8 cut(s)	99, 115, 117, 194, 197, 231, 353, 356
AclWI	GGATC	2 cut(s)	270, 305
AcoI	YGGCCR	2 cut(s)	44, 162
AcsI	RAATTY	1 cut(s)	65
AcuI	CTGAAG	1 cut(s)	69
AfiI	CCNNNNNNNGG	2 cut(s)	212, 339
AjnI	CCWGG	1 cut(s)	278
AluBI	AGCT	2 cut(s)	25, 350
AluI	AGCT	2 cut(s)	25, 350
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	2 cut(s)	270, 305
Ama87I	CYCGRG	1 cut(s)	253
AoxI	GGCC	2 cut(s)	44, 162
ApeKI	GCWGC	4 cut(s)	136, 178, 283, 350
ApoI	RAATTY	1 cut(s)	65
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	2 cut(s)	54, 330
AsuHPI	GGTGA	2 cut(s)	164, 227
AvaI	CYCGRG	1 cut(s)	253
AvaII	GGWCC	2 cut(s)	54, 330
BanII	GRGCYC	2 cut(s)	13, 115
BbsI	GAAGAC	1 cut(s)	238
BbvI	GCAGC	4 cut(s)	148, 165, 270, 337
BccI	CCATC	1 cut(s)	305
BciT130I	CCWGG	1 cut(s)	280
BclI	TGATCA	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	2 cut(s)	71, 273
BisI	GCNGC	6 cut(s)	137, 179, 195, 284, 351, 354
BlsI	GCNGC	6 cut(s)	138, 180, 196, 285, 352, 355
Bme1390I	CCNGG	1 cut(s)	280
Bme18I	GGWCC	2 cut(s)	54, 330
BmeT110I	CYCGRG	1 cut(s)	253
BmgT120I	GGNCC	2 cut(s)	54, 330
BmiI	GGNNCC	2 cut(s)	12, 201
BmrFI	CCNGG	1 cut(s)	280
BmsI	GCATC	2 cut(s)	93, 324
BpiI	GAAGAC	1 cut(s)	238
Bpu10I	CCTNAGC	1 cut(s)	95
BsaBI	GATNNNNATC	1 cut(s)	274
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	3 cut(s)	115, 148, 171
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 339
Bse8I	GATNNNNATC	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	280
BseDI	CCNNGG	3 cut(s)	115, 148, 171
BseGI	GGATG	4 cut(s)	39, 108, 315, 316
BseJI	GATNNNNATC	1 cut(s)	274
BseLI	CCNNNNNNNGG	2 cut(s)	212, 339
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	4 cut(s)	148, 165, 270, 337
Bsh1236I	CGCG	2 cut(s)	117, 231
BshFI	GGCC	2 cut(s)	46, 164
BsiHKCI	CYCGRG	1 cut(s)	253
BsiSI	CCGG	1 cut(s)	43
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	2 cut(s)	212, 339
BsmAI	GTCTC	1 cut(s)	149
BsmFI	GGGAC	1 cut(s)	356
BsnI	GGCC	2 cut(s)	46, 164
Bso31I	GGTCTC	1 cut(s)	149
BsoBI	CYCGRG	1 cut(s)	253
Bsp1286I	GDGCHC	2 cut(s)	13, 115
Bsp143I	GATC	4 cut(s)	36, 269, 275, 297
Bsp19I	CCATGG	2 cut(s)	148, 171
BspACI	CCGC	8 cut(s)	99, 115, 117, 194, 197, 231, 353, 356
BspANI	GGCC	2 cut(s)	46, 164
BspFNI	CGCG	2 cut(s)	117, 231
BspLI	GGNNCC	2 cut(s)	12, 201
BspPI	GGATC	2 cut(s)	270, 305
BspTNI	GGTCTC	1 cut(s)	149
BssECI	CCNNGG	3 cut(s)	115, 148, 171
BssMI	GATC	4 cut(s)	36, 269, 275, 297
BssT1I	CCWWGG	2 cut(s)	148, 171
Bst2UI	CCWGG	1 cut(s)	280
Bst4CI	ACNGT	4 cut(s)	61, 210, 338, 378
BstC8I	GCNNGC	2 cut(s)	115, 129
BstDEI	CTNAG	1 cut(s)	95
BstDSI	CCRYGG	3 cut(s)	115, 148, 171
BstF5I	GGATG	4 cut(s)	39, 108, 315, 316
BstFNI	CGCG	2 cut(s)	117, 231
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	4 cut(s)	39, 272, 278, 300
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	4 cut(s)	36, 269, 275, 297
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 362
BstNI	CCWGG	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	278
BstUI	CGCG	2 cut(s)	117, 231
BstV1I	GCAGC	4 cut(s)	148, 165, 270, 337
BstV2I	GAAGAC	1 cut(s)	238
BstX2I	RGATCY	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	275
BsuRI	GGCC	2 cut(s)	46, 164
BtgI	CCRYGG	3 cut(s)	115, 148, 171
BtsCI	GGATG	4 cut(s)	39, 108, 315, 316
BtsIMutI	CAGTG	3 cut(s)	32, 57, 343
Cac8I	GCNNGC	2 cut(s)	115, 129
CfoI	GCGC	1 cut(s)	231
Cfr13I	GGNCC	2 cut(s)	54, 330
Cfr42I	CCGCGG	1 cut(s)	118
CspCI	CAANNNNNGTGG	2 cut(s)	192, 227
CviAII	CATG	3 cut(s)	149, 172, 287
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	4 cut(s)	38, 271, 277, 299
DpnII	GATC	4 cut(s)	36, 269, 275, 297
EaeI	YGGCCR	2 cut(s)	44, 162
EciI	GGCGGA	1 cut(s)	212
Eco130I	CCWWGG	2 cut(s)	148, 171
Eco24I	GRGCYC	2 cut(s)	13, 115
Eco31I	GGTCTC	1 cut(s)	149
Eco47I	GGWCC	2 cut(s)	54, 330
Eco57I	CTGAAG	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	278
EcoT14I	CCWWGG	2 cut(s)	148, 171
EcoT22I	ATGCAT	1 cut(s)	108
EcoT38I	GRGCYC	2 cut(s)	13, 115
ErhI	CCWWGG	2 cut(s)	148, 171
FaeI	CATG	3 cut(s)	152, 175, 290
FaiI	YATR	4 cut(s)	108, 150, 173, 288
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	3 cut(s)	148, 171, 286
FauI	CCCGC	3 cut(s)	92, 110, 122
FbaI	TGATCA	1 cut(s)	36
FblI	GTMKAC	1 cut(s)	80
Fnu4HI	GCNGC	6 cut(s)	137, 179, 195, 284, 351, 354
FokI	GGATG	4 cut(s)	26, 115, 302, 323
FriOI	GRGCYC	2 cut(s)	13, 115
Fsp4HI	GCNGC	6 cut(s)	137, 179, 195, 284, 351, 354
FspBI	CTAG	2 cut(s)	71, 273
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	6 cut(s)	137, 179, 195, 284, 351, 354
HaeIII	GGCC	2 cut(s)	46, 164
HapII	CCGG	1 cut(s)	43
HhaI	GCGC	1 cut(s)	231
Hin1II	CATG	3 cut(s)	152, 175, 290
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HinfI	GANTC	2 cut(s)	167, 263
HpaII	CCGG	1 cut(s)	43
HphI	GGTGA	2 cut(s)	164, 227
Hpy166II	GTNNAC	2 cut(s)	57, 81
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	3 cut(s)	260, 267, 273
Hpy8I	GTNNAC	2 cut(s)	57, 81
Hpy99I	CGWCG	1 cut(s)	378
HpyAV	CCTTC	2 cut(s)	116, 212
HpyCH4III	ACNGT	4 cut(s)	61, 210, 338, 378
HpyCH4V	TGCA	3 cut(s)	106, 131, 286
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 362
HpyF3I	CTNAG	1 cut(s)	95
Hsp92II	CATG	3 cut(s)	152, 175, 290
HspAI	GCGC	1 cut(s)	229
Ksp22I	TGATCA	1 cut(s)	36
KspI	CCGCGG	1 cut(s)	118
Kzo9I	GATC	4 cut(s)	36, 269, 275, 297
LmnI	GCTCC	3 cut(s)	16, 199, 226
LpnPI	CCDG	6 cut(s)	56, 61, 245, 265, 292, 310
Lsp1109I	GCAGC	4 cut(s)	148, 165, 270, 337
LweI	GCATC	2 cut(s)	93, 324
MaeI	CTAG	2 cut(s)	71, 273
MalI	GATC	4 cut(s)	38, 271, 277, 299
MboI	GATC	4 cut(s)	36, 269, 275, 297
MboII	GAAGA	1 cut(s)	238
MflI	RGATCY	1 cut(s)	275
MhlI	GDGCHC	2 cut(s)	13, 115
MluCI	AATT	1 cut(s)	65
MmeI	TCCRAC	2 cut(s)	288, 357
MnlI	CCTC	3 cut(s)	260, 329, 332
Mph1103I	ATGCAT	1 cut(s)	108
MspA1I	CMGCKG	1 cut(s)	117
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	1 cut(s)	280
MvaI	CCWGG	1 cut(s)	280
MvnI	CGCG	2 cut(s)	117, 231
MwoI	GCNNNNNNNGC	2 cut(s)	133, 362
NcoI	CCATGG	2 cut(s)	148, 171
NdeII	GATC	4 cut(s)	36, 269, 275, 297
NlaIII	CATG	3 cut(s)	152, 175, 290
NlaIV	GGNNCC	2 cut(s)	12, 201
NsiI	ATGCAT	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	167, 263
PkrI	GCNGC	6 cut(s)	138, 180, 196, 285, 352, 355
Psp6I	CCWGG	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	278
PspN4I	GGNNCC	2 cut(s)	12, 201
PspPI	GGNCC	2 cut(s)	54, 330
PsuI	RGATCY	1 cut(s)	275
SacII	CCGCGG	1 cut(s)	118
SalI	GTCGAC	1 cut(s)	79
SatI	GCNGC	6 cut(s)	137, 179, 195, 284, 351, 354
Sau3AI	GATC	4 cut(s)	36, 269, 275, 297
Sau96I	GGNCC	2 cut(s)	54, 330
ScrFI	CCNGG	1 cut(s)	280
SduI	GDGCHC	2 cut(s)	13, 115
SetI	ASST	6 cut(s)	27, 56, 80, 96, 145, 352
SfaNI	GCATC	2 cut(s)	93, 324
Sfr303I	CCGCGG	1 cut(s)	118
SgrBI	CCGCGG	1 cut(s)	118
SinI	GGWCC	2 cut(s)	54, 330
Sse9I	AATT	1 cut(s)	65
SsiI	CCGC	8 cut(s)	99, 115, 117, 194, 197, 231, 353, 356
SspMI	CTAG	2 cut(s)	71, 273
StyD4I	CCNGG	1 cut(s)	278
StyI	CCWWGG	2 cut(s)	148, 171
TaaI	ACNGT	4 cut(s)	61, 210, 338, 378
TaqI	TCGA	2 cut(s)	80, 373
TasI	AATT	1 cut(s)	65
TauI	GCSGC	2 cut(s)	197, 356
TfiI	GAWTC	2 cut(s)	167, 263
TscAI	CASTG	3 cut(s)	39, 64, 343
TseI	GCWGC	4 cut(s)	136, 178, 283, 350
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	39, 64, 343
VpaK11BI	GGWCC	2 cut(s)	54, 330
XapI	RAATTY	1 cut(s)	65
XbaI	TCTAGA	1 cut(s)	272
XmiI	GTMKAC	1 cut(s)	80
XspI	CTAG	2 cut(s)	71, 273
Zsp2I	ATGCAT	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.