Rorug06G0045000

sphingolipid transporter spinster homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001054
Physical Location & Seq
Reverse (-)
5918807 .. 5919842
1036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0045000.1

Sequence Viewer

Length: 555 bp
ATGGAGGAGGGTGATGAAAAATTGGTTATACTGGATCACACGGAAACACTACAATCTCATCTATCATGCTCTGTATTTGTATTTGGGCTGGGCCCTGATCTTGGTTTTGGGCCGGGTTGGCGTGTCTTGGGAGTTTCTTTGCCGACCGGTGGCGGCAAGTCGGCAACAACCGATGGTGCAGTGGTCATTTGGTCTCATTGGGCCCATAGGATTGGTTTTCGGCTTTTCTTCATGCTACTTTGGGCGTTGTGGACAGAGCGCAAAAATGCAGTTTGGAATGGCAATGTGTTTAATCCTATTAATACGGCCTGTTGGGCTTCGAAGCACTACAAGATTTGCACTCACTGGCAAAGAGAAAAAGAAGCAGCCTATGCCTCAGACCGGTGGCAGCACCCTCCAAGTGGGAGGCTGAAATTGAATGTAGACGGTGCTTTCCATATGGACATAGGACAAGGAGGCATTGGGGCAGTTATTAGAGATGAAAATGGTACGTTTTTGGCTGCTATTGCACGTCCCTTTTCTTTTGTACGTTCTGCTTTGCATATGGAAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1 OATP

Protein Analysis

184

Amino Acids

20.52

Weight (kDa)

7.13

Isoelectric Point (pI)

34.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 140 - 179 3.4e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 423
AciI CCGC 1 cut(s) 153
AclWI GGATC 1 cut(s) 42
AcsI RAATTY 1 cut(s) 549
AfaI GTAC 2 cut(s) 490, 528
AfiI CCNNNNNNNGG 4 cut(s) 101, 149, 381, 401
AgeI ACCGGT 2 cut(s) 146, 381
AgsI TTSAA 1 cut(s) 418
AjiI CACGTC 1 cut(s) 512
Alw26I GTCTC 1 cut(s) 198
AlwI GGATC 1 cut(s) 42
AoxI GGCC 4 cut(s) 91, 110, 201, 306
ApaI GGGCCC 2 cut(s) 95, 205
ApeKI GCWGC 3 cut(s) 365, 388, 500
ApoI RAATTY 1 cut(s) 549
AseI ATTAAT 1 cut(s) 300
AsiGI ACCGGT 2 cut(s) 146, 381
AspLEI GCGC 1 cut(s) 261
AspS9I GGNCC 5 cut(s) 91, 92, 110, 201, 202
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 23
AsuII TTCGAA 1 cut(s) 320
BaeGI GKGCMC 2 cut(s) 95, 205
BanII GRGCYC 2 cut(s) 95, 205
BbvI GCAGC 3 cut(s) 377, 400, 487
BccI CCATC 1 cut(s) 167
BceAI ACGGC 1 cut(s) 321
BcnI CCSGG 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 198
BglI GCCNNNNNGGC 2 cut(s) 118, 314
BisI GCNGC 4 cut(s) 154, 366, 389, 501
BlsI GCNGC 4 cut(s) 155, 367, 390, 502
Bme1390I CCNGG 1 cut(s) 114
BmgBI CACGTC 1 cut(s) 512
BmgT120I GGNCC 5 cut(s) 91, 92, 110, 201, 202
BmiI GGNNCC 2 cut(s) 93, 203
BmrFI CCNGG 1 cut(s) 114
Bpu14I TTCGAA 1 cut(s) 320
BpuMI CCSGG 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 198
BsaWI WCCGGW 2 cut(s) 146, 381
Bsc4I CCNNNNNNNGG 4 cut(s) 101, 149, 381, 401
Bse118I RCCGGY 2 cut(s) 146, 381
Bse1I ACTGG 2 cut(s) 36, 350
Bse3DI GCAATG 1 cut(s) 289
BseLI CCNNNNNNNGG 4 cut(s) 101, 149, 381, 401
BseMI GCAATG 1 cut(s) 289
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 2 cut(s) 36, 350
BseRI GAGGAG 1 cut(s) 20
BseSI GKGCMC 2 cut(s) 95, 205
BseXI GCAGC 3 cut(s) 377, 400, 487
BseYI CCCAGC 1 cut(s) 88
BsgI GTGCAG 1 cut(s) 198
Bsh1285I CGRYCG 1 cut(s) 147
BshFI GGCC 4 cut(s) 93, 112, 203, 308
BshTI ACCGGT 2 cut(s) 146, 381
BsiEI CGRYCG 1 cut(s) 147
BsiSI CCGG 3 cut(s) 113, 147, 382
BslFI GGGAC 1 cut(s) 498
BslI CCNNNNNNNGG 4 cut(s) 101, 149, 381, 401
BsmAI GTCTC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 498
BsnI GGCC 4 cut(s) 93, 112, 203, 308
Bso31I GGTCTC 1 cut(s) 198
Bsp119I TTCGAA 1 cut(s) 320
Bsp120I GGGCCC 2 cut(s) 91, 201
Bsp1286I GDGCHC 2 cut(s) 95, 205
Bsp143I GATC 2 cut(s) 34, 97
BspACI CCGC 1 cut(s) 153
BspANI GGCC 4 cut(s) 93, 112, 203, 308
BspCNI CTCAG 1 cut(s) 389
BspLI GGNNCC 2 cut(s) 93, 203
BspPI GGATC 1 cut(s) 42
BspT104I TTCGAA 1 cut(s) 320
BspTNI GGTCTC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 289
BsrFI RCCGGY 2 cut(s) 146, 381
BsrI ACTGG 2 cut(s) 36, 350
BssAI RCCGGY 2 cut(s) 146, 381
BssMI GATC 2 cut(s) 34, 97
Bst4CI ACNGT 1 cut(s) 428
BstAPI GCANNNNNTGC 1 cut(s) 371
BstBI TTCGAA 1 cut(s) 320
BstDEI CTNAG 1 cut(s) 376
BstHHI GCGC 1 cut(s) 261
BstKTI GATC 2 cut(s) 37, 100
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 2 cut(s) 34, 97
BstMCI CGRYCG 1 cut(s) 147
BstMWI GCNNNNNNNGC 4 cut(s) 118, 314, 371, 506
BstSCI CCNGG 1 cut(s) 112
BstSLI GKGCMC 2 cut(s) 95, 205
BstV1I GCAGC 3 cut(s) 377, 400, 487
BstXI CCANNNNNNTGG 1 cut(s) 212
BsuRI GGCC 4 cut(s) 93, 112, 203, 308
BtrI CACGTC 1 cut(s) 512
BtsI GCAGTG 1 cut(s) 186
BtsIMutI CAGTG 2 cut(s) 186, 343
CfoI GCGC 1 cut(s) 261
Cfr10I RCCGGY 2 cut(s) 146, 381
Cfr13I GGNCC 5 cut(s) 91, 92, 110, 201, 202
Csp6I GTAC 2 cut(s) 489, 527
CspAI ACCGGT 2 cut(s) 146, 381
CviAII CATG 2 cut(s) 66, 232
CviQI GTAC 2 cut(s) 489, 527
DdeI CTNAG 1 cut(s) 376
DpnI GATC 2 cut(s) 36, 99
DpnII GATC 2 cut(s) 34, 97
Eco24I GRGCYC 2 cut(s) 95, 205
Eco31I GGTCTC 1 cut(s) 198
EcoO109I RGGNCCY 1 cut(s) 92
EcoT38I GRGCYC 2 cut(s) 95, 205
FaeI CATG 2 cut(s) 69, 235
FaqI GGGAC 1 cut(s) 498
FatI CATG 2 cut(s) 65, 231
FauNDI CATATG 2 cut(s) 438, 543
FblI GTMKAC 1 cut(s) 423
Fnu4HI GCNGC 4 cut(s) 154, 366, 389, 501
FriOI GRGCYC 2 cut(s) 95, 205
Fsp4HI GCNGC 4 cut(s) 154, 366, 389, 501
GlaI GCGC 1 cut(s) 260
GluI GCNGC 4 cut(s) 154, 366, 389, 501
GsaI CCCAGC 1 cut(s) 92
HaeIII GGCC 4 cut(s) 93, 112, 203, 308
HapII CCGG 3 cut(s) 113, 147, 382
HhaI GCGC 1 cut(s) 261
Hin1II CATG 2 cut(s) 69, 235
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HpaII CCGG 3 cut(s) 113, 147, 382
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 2 cut(s) 252, 424
Hpy188I TCNGA 1 cut(s) 379
Hpy8I GTNNAC 2 cut(s) 252, 424
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4IV ACGT 3 cut(s) 491, 511, 529
HpyCH4V TGCA 5 cut(s) 179, 269, 339, 509, 541
HpyF10VI GCNNNNNNNGC 4 cut(s) 118, 314, 371, 506
HpyF3I CTNAG 1 cut(s) 376
HpySE526I ACGT 3 cut(s) 491, 511, 529
Hsp92II CATG 2 cut(s) 69, 235
HspAI GCGC 1 cut(s) 259
Kzo9I GATC 2 cut(s) 34, 97
LpnPI CCDG 8 cut(s) 17, 74, 108, 126, 160, 322, 331, 395
Lsp1109I GCAGC 3 cut(s) 377, 400, 487
MaeII ACGT 3 cut(s) 491, 511, 529
MalI GATC 2 cut(s) 36, 99
MboI GATC 2 cut(s) 34, 97
MboII GAAGA 1 cut(s) 220
MhlI GDGCHC 2 cut(s) 95, 205
MluCI AATT 3 cut(s) 20, 413, 549
MnlI CCTC 4 cut(s) 385, 399, 405, 449
MseI TTAA 2 cut(s) 291, 300
MspI CCGG 3 cut(s) 113, 147, 382
MspR9I CCNGG 1 cut(s) 114
MwoI GCNNNNNNNGC 4 cut(s) 118, 314, 371, 506
NciI CCSGG 1 cut(s) 114
NdeI CATATG 2 cut(s) 438, 543
NdeII GATC 2 cut(s) 34, 97
NlaIII CATG 2 cut(s) 69, 235
NlaIV GGNNCC 2 cut(s) 93, 203
NspV TTCGAA 1 cut(s) 320
PinAI ACCGGT 2 cut(s) 146, 381
PkrI GCNGC 4 cut(s) 155, 367, 390, 502
PshBI ATTAAT 1 cut(s) 300
PspFI CCCAGC 1 cut(s) 88
PspN4I GGNNCC 2 cut(s) 93, 203
PspOMI GGGCCC 2 cut(s) 91, 201
PspPI GGNCC 5 cut(s) 91, 92, 110, 201, 202
RsaI GTAC 2 cut(s) 490, 528
RsaNI GTAC 2 cut(s) 489, 527
SaqAI TTAA 2 cut(s) 291, 300
SatI GCNGC 4 cut(s) 154, 366, 389, 501
Sau3AI GATC 2 cut(s) 34, 97
Sau96I GGNCC 5 cut(s) 91, 92, 110, 201, 202
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 2 cut(s) 95, 205
SetI ASST 3 cut(s) 494, 514, 532
SfuI TTCGAA 1 cut(s) 320
Sse9I AATT 3 cut(s) 20, 413, 549
SsiI CCGC 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 112
TaaI ACNGT 1 cut(s) 428
TaiI ACGT 3 cut(s) 494, 514, 532
TaqI TCGA 1 cut(s) 320
TasI AATT 3 cut(s) 20, 413, 549
TauI GCSGC 1 cut(s) 156
Tru1I TTAA 2 cut(s) 291, 300
Tru9I TTAA 2 cut(s) 291, 300
TscAI CASTG 2 cut(s) 186, 350
TseI GCWGC 3 cut(s) 365, 388, 500
TspDTI ATGAA 3 cut(s) 30, 220, 495
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 2 cut(s) 186, 350
VspI ATTAAT 1 cut(s) 300
XapI RAATTY 1 cut(s) 549
XmiI GTMKAC 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.