Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001054

Physical Location & Seq

Genomic Coordinates Forward (+)

64864638 .. 64873843

Gene Structure 9206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG468700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAAGAGAGCGCGCAAGGTTCCTGTGACACTACAGTGGAGCATAAACAACCACACTGGGCCATTTGATTTTGACAGGTCCATTGTTTTTTCAACGAGTCCACTGTTGACTTTAATCGGTTTCAAGATAATTTGTACTCACGGGATCCGGATGTCAACCCGGCTTGCATTGTGTACCCAGTACCCTTCTCGCGCATTCAATTGGTCAGTAATTTATTGTTACTGCCCCTCGGGCTCCGAGGGAAATTCGTATCTCGGGCTATCTTCTTGTCATGGTGAACTTTTCAAACAAGAGGATAAGAATAGAAGAGAGAAAACCCTAGAGAGAACGCTGTTGGCTGAGATTGTGCCTTTCCAGCTGTGCCTCAGCGCTGGCACTGGCCATTGGCCATGTCGTTGCACTGTGCATGTGGCTGGACGAGTTCTGTTGCCCATGGCCAGGTCCGACACTCGGAGGCTATGGTGTGGAGGTTTCTTCCCCCATTTATTCTCTGATCTGGCTGCACCATGGTATGATCGGTCGGTGAGGGATGGGATCAATGTTGGGTGGATCCACGATGCGGCGATGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

190

Amino Acids

21.48

Weight (kDa)

9.2

Isoelectric Point (pI)

52.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64500
fragaria_vesca	FvH4_2g10930 FvH4_2g10950 FvH4_2g10950 FvH4_2g10950 FvH4_6g42030
malus_domestica	MD05G1050900.v1.1 MD10G1058300.v1.1 MD12G1201800.v1.1
prunus_persica	Prupe.8G077700_v2.0.a1
pyrus_communis	pycom05g04300 pycom10g04500 pycom12g18820
rosa_chinensis	RchiOBHm_Chr2g0157961 RchiOBHm_Chr6g0269131 RchiOBHm_Chr6g0269161
rosa_laevigata	RLG00000009401 RLG00000013876 RLG00000013877 RLG00000013878 RLG00000013882 RLG00000021038 RLG00000021042
rosa_multiflora	Rmu_sc0000419.1_g000007 Rmu_sc0002120.1_g000003 Rmu_sc0004362.1_g000010 Rmu_ssc0000381.1_g000027
rosa_roxburghii	Rroxscaffold_1G00004920 Rroxscaffold_2G00091820 Rroxscaffold_3G00252830 Rroxscaffold_6G00415270 Rroxscaffold_7G00183520 Rroxscaffold_7G00199000 Rroxscaffold_7G00199020 Rroxscaffold_7G00199180
rosa_rugosa	Rorug02G0464700 Rorug02G0529300 Rorug06G0044900 Rorug06G0044900 Rorug06G0044900 Rorug06G0045000 Rorug06G0045100
rosa_samantha	Rh2AG530300 Rh2BG545000 Rh2CG514700 Rh2DG553200 Rh6AG165700 Rh6BG171100 Rh6BG171300 Rh6CG164700 Rh6CG165000 Rh6DG079900 Rh6DG156200 Rh6DG156600 Rh7AG468700 Rh7BG367400
rosa_wichuraiana	Rw2G043880 Rw6G014240 Rw6G014290 Rw6G014310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	13, 192
AccIII	TCCGGA	1 cut(s)	147
AciI	CCGC	1 cut(s)	560
AclWI	GGATC	5 cut(s)	139, 152, 542, 544, 557
AcoI	YGGCCR	3 cut(s)	379, 386, 435
AcsI	RAATTY	1 cut(s)	244
AfaI	GTAC	3 cut(s)	136, 175, 182
AfeI	AGCGCT	1 cut(s)	370
AfiI	CCNNNNNNNGG	3 cut(s)	438, 450, 559
AgsI	TTSAA	4 cut(s)	93, 124, 199, 286
AjnI	CCWGG	1 cut(s)	437
AleI	CACNNNNGTG	1 cut(s)	34
AluBI	AGCT	1 cut(s)	358
AluI	AGCT	1 cut(s)	358
AlwI	GGATC	5 cut(s)	139, 152, 542, 544, 557
Ama87I	CYCGRG	2 cut(s)	229, 254
Aor13HI	TCCGGA	1 cut(s)	147
Aor51HI	AGCGCT	1 cut(s)	370
AoxI	GGCC	4 cut(s)	59, 379, 386, 435
ApeKI	GCWGC	1 cut(s)	500
ApoI	RAATTY	1 cut(s)	244
AspLEI	GCGC	4 cut(s)	13, 15, 194, 371
AspS9I	GGNCC	3 cut(s)	59, 78, 441
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	2 cut(s)	287, 535
AvaI	CYCGRG	2 cut(s)	229, 254
AvaII	GGWCC	2 cut(s)	78, 441
BalI	TGGCCA	3 cut(s)	381, 388, 437
BamHI	GGATCC	2 cut(s)	144, 549
BanII	GRGCYC	1 cut(s)	236
BbvCI	CCTCAGC	1 cut(s)	365
BbvI	GCAGC	1 cut(s)	487
BccI	CCATC	2 cut(s)	524, 559
BciT130I	CCWGG	1 cut(s)	439
BcnI	CCSGG	1 cut(s)	160
BfaI	CTAG	1 cut(s)	320
BfmI	CTRYAG	1 cut(s)	32
BfoI	RGCGCY	1 cut(s)	372
BglI	GCCNNNNNGGC	1 cut(s)	231
BisI	GCNGC	2 cut(s)	501, 561
BlsI	GCNGC	2 cut(s)	502, 562
Bme1390I	CCNGG	2 cut(s)	160, 439
Bme18I	GGWCC	2 cut(s)	78, 441
BmeT110I	CYCGRG	2 cut(s)	229, 254
BmgT120I	GGNCC	3 cut(s)	59, 78, 441
BmiI	GGNNCC	4 cut(s)	21, 146, 235, 551
BmrFI	CCNGG	2 cut(s)	160, 439
BmrI	ACTGGG	2 cut(s)	66, 172
BmsI	GCATC	1 cut(s)	547
BmuI	ACTGGG	2 cut(s)	66, 172
Bpu10I	CCTNAGC	1 cut(s)	365
BpuMI	CCSGG	1 cut(s)	160
BsaJI	CCNNGG	4 cut(s)	228, 237, 432, 506
BsaWI	WCCGGW	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	3 cut(s)	438, 450, 559
Bse1I	ACTGG	3 cut(s)	61, 178, 382
BseAI	TCCGGA	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	439
BseDI	CCNNGG	4 cut(s)	228, 237, 432, 506
BseGI	GGATG	2 cut(s)	156, 535
BseLI	CCNNNNNNNGG	3 cut(s)	438, 450, 559
BseMII	CTCAG	2 cut(s)	330, 379
BseNI	ACTGG	3 cut(s)	61, 178, 382
BsePI	GCGCGC	1 cut(s)	11
BseXI	GCAGC	1 cut(s)	487
BsgI	GTGCAG	1 cut(s)	486
Bsh1236I	CGCG	2 cut(s)	13, 192
Bsh1285I	CGRYCG	1 cut(s)	521
BshFI	GGCC	4 cut(s)	61, 381, 388, 437
BsiEI	CGRYCG	1 cut(s)	521
BsiHKCI	CYCGRG	2 cut(s)	229, 254
BsiSI	CCGG	2 cut(s)	148, 160
BslI	CCNNNNNNNGG	3 cut(s)	438, 450, 559
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	4 cut(s)	61, 381, 388, 437
BsoBI	CYCGRG	2 cut(s)	229, 254
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp13I	TCCGGA	1 cut(s)	147
Bsp143I	GATC	5 cut(s)	144, 493, 514, 534, 549
Bsp19I	CCATGG	2 cut(s)	432, 506
BspACI	CCGC	1 cut(s)	560
BspANI	GGCC	4 cut(s)	61, 381, 388, 437
BspCNI	CTCAG	2 cut(s)	331, 378
BspEI	TCCGGA	1 cut(s)	147
BspFNI	CGCG	2 cut(s)	13, 192
BspLI	GGNNCC	4 cut(s)	21, 146, 235, 551
BspPI	GGATC	5 cut(s)	139, 152, 542, 544, 557
BsrI	ACTGG	3 cut(s)	61, 178, 382
BssECI	CCNNGG	4 cut(s)	228, 237, 432, 506
BssHII	GCGCGC	1 cut(s)	11
BssMI	GATC	5 cut(s)	144, 493, 514, 534, 549
BssT1I	CCWWGG	2 cut(s)	432, 506
Bst2UI	CCWGG	1 cut(s)	439
Bst4CI	ACNGT	3 cut(s)	36, 105, 403
Bst6I	CTCTTC	1 cut(s)	301
BstC8I	GCNNGC	3 cut(s)	13, 165, 373
BstDEI	CTNAG	2 cut(s)	339, 365
BstDSI	CCRYGG	2 cut(s)	432, 506
BstF5I	GGATG	2 cut(s)	156, 535
BstFNI	CGCG	2 cut(s)	13, 192
BstH2I	RGCGCY	1 cut(s)	372
BstHHI	GCGC	4 cut(s)	13, 15, 194, 371
BstKTI	GATC	5 cut(s)	147, 496, 517, 537, 552
BstMBI	GATC	5 cut(s)	144, 493, 514, 534, 549
BstMCI	CGRYCG	1 cut(s)	521
BstMWI	GCNNNNNNNGC	2 cut(s)	231, 355
BstNI	CCWGG	1 cut(s)	439
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	2 cut(s)	158, 437
BstSFI	CTRYAG	1 cut(s)	32
BstUI	CGCG	2 cut(s)	13, 192
BstV1I	GCAGC	1 cut(s)	487
BstX2I	RGATCY	2 cut(s)	144, 549
BstYI	RGATCY	2 cut(s)	144, 549
BsuRI	GGCC	4 cut(s)	61, 381, 388, 437
BtgI	CCRYGG	2 cut(s)	432, 506
BtsCI	GGATG	2 cut(s)	156, 535
BtsIMutI	CAGTG	5 cut(s)	41, 54, 101, 375, 399
Cac8I	GCNNGC	3 cut(s)	13, 165, 373
CfoI	GCGC	4 cut(s)	13, 15, 194, 371
Cfr13I	GGNCC	3 cut(s)	59, 78, 441
Csp6I	GTAC	3 cut(s)	135, 174, 181
CviAII	CATG	5 cut(s)	272, 390, 407, 433, 507
CviQI	GTAC	3 cut(s)	135, 174, 181
DdeI	CTNAG	2 cut(s)	339, 365
DpnI	GATC	5 cut(s)	146, 495, 516, 536, 551
DpnII	GATC	5 cut(s)	144, 493, 514, 534, 549
EaeI	YGGCCR	3 cut(s)	379, 386, 435
Eam1104I	CTCTTC	1 cut(s)	301
EarI	CTCTTC	1 cut(s)	301
Eco130I	CCWWGG	2 cut(s)	432, 506
Eco24I	GRGCYC	1 cut(s)	236
Eco47I	GGWCC	2 cut(s)	78, 441
Eco47III	AGCGCT	1 cut(s)	370
Eco88I	CYCGRG	2 cut(s)	229, 254
EcoRII	CCWGG	1 cut(s)	437
EcoT14I	CCWWGG	2 cut(s)	432, 506
EcoT38I	GRGCYC	1 cut(s)	236
ErhI	CCWWGG	2 cut(s)	432, 506
FaeI	CATG	5 cut(s)	275, 393, 410, 436, 510
FaiI	YATR	8 cut(s)	44, 273, 391, 408, 434, 460, 508, 513
FatI	CATG	5 cut(s)	271, 389, 406, 432, 506
Fnu4HI	GCNGC	2 cut(s)	501, 561
FokI	GGATG	2 cut(s)	163, 542
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	2 cut(s)	501, 561
FspBI	CTAG	1 cut(s)	320
GlaI	GCGC	4 cut(s)	12, 14, 193, 370
GluI	GCNGC	2 cut(s)	501, 561
HaeII	RGCGCY	1 cut(s)	372
HaeIII	GGCC	4 cut(s)	61, 381, 388, 437
HapII	CCGG	2 cut(s)	148, 160
HhaI	GCGC	4 cut(s)	13, 15, 194, 371
Hin1II	CATG	5 cut(s)	275, 393, 410, 436, 510
Hin6I	GCGC	4 cut(s)	11, 13, 192, 369
HinP1I	GCGC	4 cut(s)	11, 13, 192, 369
HincII	GTYRAC	2 cut(s)	108, 156
HindII	GTYRAC	2 cut(s)	108, 156
HinfI	GANTC	1 cut(s)	97
HpaII	CCGG	2 cut(s)	148, 160
HphI	GGTGA	2 cut(s)	287, 535
Hpy166II	GTNNAC	5 cut(s)	101, 108, 156, 174, 278
Hpy188I	TCNGA	4 cut(s)	238, 445, 453, 493
Hpy188III	TCNNGA	2 cut(s)	124, 148
Hpy8I	GTNNAC	5 cut(s)	101, 108, 156, 174, 278
HpyAV	CCTTC	1 cut(s)	195
HpyCH4III	ACNGT	3 cut(s)	36, 105, 403
HpyCH4V	TGCA	4 cut(s)	167, 399, 406, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	231, 355
HpyF3I	CTNAG	2 cut(s)	339, 365
Hsp92II	CATG	5 cut(s)	275, 393, 410, 436, 510
HspAI	GCGC	4 cut(s)	11, 13, 192, 369
Kpn2I	TCCGGA	1 cut(s)	147
Kzo9I	GATC	5 cut(s)	144, 493, 514, 534, 549
LmnI	GCTCC	2 cut(s)	39, 239
Lsp1109I	GCAGC	1 cut(s)	487
LweI	GCATC	1 cut(s)	547
MaeI	CTAG	1 cut(s)	320
MaeIII	GTNAC	2 cut(s)	25, 218
MalI	GATC	5 cut(s)	146, 495, 516, 536, 551
MboI	GATC	5 cut(s)	144, 493, 514, 534, 549
MboII	GAAGA	4 cut(s)	16, 255, 318, 466
MfeI	CAATTG	1 cut(s)	199
MflI	RGATCY	2 cut(s)	144, 549
MhlI	GDGCHC	1 cut(s)	236
MlsI	TGGCCA	3 cut(s)	381, 388, 437
MluCI	AATT	4 cut(s)	129, 199, 210, 244
MluNI	TGGCCA	3 cut(s)	381, 388, 437
MlyI	GAGTC	1 cut(s)	106
MmeI	TCCRAC	1 cut(s)	468
MnlI	CCTC	7 cut(s)	232, 238, 286, 374, 447, 461, 519
Mox20I	TGGCCA	3 cut(s)	381, 388, 437
MroI	TCCGGA	1 cut(s)	147
MscI	TGGCCA	3 cut(s)	381, 388, 437
MseI	TTAA	1 cut(s)	113
MslI	CAYNNNNRTG	1 cut(s)	34
Msp20I	TGGCCA	3 cut(s)	381, 388, 437
MspA1I	CMGCKG	1 cut(s)	358
MspI	CCGG	2 cut(s)	148, 160
MspR9I	CCNGG	2 cut(s)	160, 439
MunI	CAATTG	1 cut(s)	199
Mva1269I	GAATGC	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	439
MvnI	CGCG	2 cut(s)	13, 192
MwoI	GCNNNNNNNGC	2 cut(s)	231, 355
NciI	CCSGG	1 cut(s)	160
NcoI	CCATGG	2 cut(s)	432, 506
NdeII	GATC	5 cut(s)	144, 493, 514, 534, 549
NlaIII	CATG	5 cut(s)	275, 393, 410, 436, 510
NlaIV	GGNNCC	4 cut(s)	21, 146, 235, 551
NmuCI	GTSAC	1 cut(s)	25
NspI	RCATGY	1 cut(s)	410
OliI	CACNNNNGTG	1 cut(s)	34
PauI	GCGCGC	1 cut(s)	11
PctI	GAATGC	1 cut(s)	194
PkrI	GCNGC	2 cut(s)	502, 562
PleI	GAGTC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	437
PspN4I	GGNNCC	4 cut(s)	21, 146, 235, 551
PspPI	GGNCC	3 cut(s)	59, 78, 441
PsuI	RGATCY	2 cut(s)	144, 549
PteI	GCGCGC	1 cut(s)	11
PvuII	CAGCTG	1 cut(s)	358
RsaI	GTAC	3 cut(s)	136, 175, 182
RsaNI	GTAC	3 cut(s)	135, 174, 181
RseI	CAYNNNNRTG	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	2 cut(s)	501, 561
Sau3AI	GATC	5 cut(s)	144, 493, 514, 534, 549
Sau96I	GGNCC	3 cut(s)	59, 78, 441
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	2 cut(s)	160, 439
SduI	GDGCHC	1 cut(s)	236
SetI	ASST	5 cut(s)	21, 80, 360, 443, 472
SfaNI	GCATC	1 cut(s)	547
SfcI	CTRYAG	1 cut(s)	32
SinI	GGWCC	2 cut(s)	78, 441
SmiMI	CAYNNNNRTG	1 cut(s)	34
Sse9I	AATT	4 cut(s)	129, 199, 210, 244
SsiI	CCGC	1 cut(s)	560
SspMI	CTAG	1 cut(s)	320
StyD4I	CCNGG	2 cut(s)	158, 437
StyI	CCWWGG	2 cut(s)	432, 506
TaaI	ACNGT	3 cut(s)	36, 105, 403
TaqII	GACCGA	1 cut(s)	507
TasI	AATT	4 cut(s)	129, 199, 210, 244
TatI	WGTACW	1 cut(s)	134
TauI	GCSGC	1 cut(s)	563
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TscAI	CASTG	5 cut(s)	41, 61, 108, 382, 406
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	1 cut(s)	500
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	5 cut(s)	41, 61, 108, 382, 406
VpaK11BI	GGWCC	2 cut(s)	78, 441
XapI	RAATTY	1 cut(s)	244
XceI	RCATGY	1 cut(s)	410
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.