Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001054

Physical Location & Seq

Genomic Coordinates Reverse (-)

22342293 .. 22344986

Gene Structure 2694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG164700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCTTAGATTCTTATTTTATGGCAGGCCAAAAATTGCAACAAAAATAAAGAATCATCTTTCAAGGTTTATGAAAGATATGAAGGATCTTTTGGTCGATAAGGTTTATGTTGTTAATGTTCTTGGTTATGTAGCATACAACTTTGTAATTGGTTCGTACTCATATTGGGGGCCTAAGGCTGGTTATAATATCTATCATATGACTAATGCAGATATGATTTTTGGAGGTATTACAATTGTGTGCGGAATATTGGGAACACTAGCAGGAGGGTTTCTTCTGGATTTCATGTCTAACACTATGTCCAATGCTTTCAAGCTTCTTTCAACAGCAACGCTTTTTGGGGCAATATTATGCTTTGGTGCCTTTTGCTTGAAGAACATGTATGGTTTCCTAGCTCTTTTTGCAGTTGGGCAACTACTTCTTTTTGCAACTCAGGGTCCTGTAAATTTTGTTTGTCTCCATTGTGTTAAACCTAGTTTGAGGCCACTATCTATGGCCATTTCTACTGTTGCAATTCACATATTTGGAGATGTGCCTTCCTCACCTCTTGTTGGAGTTATCCAGGATCACATCCAGAATTGGAGGTCAACTGCTCTTATTCTAACATCCGTTTTGATTCCTGCAGCGGCCATATGGTTTACAGCAATTTTCATGGACAGCGTGGATAGATATGATGAAGAAAGTGATGATGAAGAAAGTGATGATGAGATAGAAACAACTGAAATGCCGTCGCTTGAAGAGAAGAAGACAGAGAAAACAACTGAATCTGCTGCTCAACCTGTCACATATTCAACTGTTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 OATP

Protein Analysis

267

Amino Acids

29.55

Weight (kDa)

5.34

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OATP	PF03137	16 - 122	1.1e-10	Organic Anion Transporter Polypeptide (OATP) family
OATP	PF03137	122 - 190	5.6e-07	Organic Anion Transporter Polypeptide (OATP) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64500
fragaria_vesca	FvH4_2g10930 FvH4_2g10950 FvH4_2g10950 FvH4_2g10950 FvH4_6g42030
malus_domestica	MD05G1050900.v1.1 MD10G1058300.v1.1 MD12G1201800.v1.1
prunus_persica	Prupe.8G077700_v2.0.a1
pyrus_communis	pycom05g04300 pycom10g04500 pycom12g18820
rosa_chinensis	RchiOBHm_Chr2g0157961 RchiOBHm_Chr6g0269131 RchiOBHm_Chr6g0269161
rosa_laevigata	RLG00000009401 RLG00000013876 RLG00000013877 RLG00000013878 RLG00000013882 RLG00000021038 RLG00000021042
rosa_multiflora	Rmu_sc0000419.1_g000007 Rmu_sc0002120.1_g000003 Rmu_sc0004362.1_g000010 Rmu_ssc0000381.1_g000027
rosa_roxburghii	Rroxscaffold_1G00004920 Rroxscaffold_2G00091820 Rroxscaffold_3G00252830 Rroxscaffold_6G00415270 Rroxscaffold_7G00183520 Rroxscaffold_7G00199000 Rroxscaffold_7G00199020 Rroxscaffold_7G00199180
rosa_rugosa	Rorug02G0464700 Rorug02G0529300 Rorug06G0044900 Rorug06G0044900 Rorug06G0044900 Rorug06G0045000 Rorug06G0045100
rosa_samantha	Rh2AG530300 Rh2BG545000 Rh2CG514700 Rh2DG553200 Rh6AG165700 Rh6BG171100 Rh6BG171300 Rh6CG164700 Rh6CG165000 Rh6DG079900 Rh6DG156200 Rh6DG156600 Rh7AG468700 Rh7BG367400
rosa_wichuraiana	Rw2G043880 Rw6G014240 Rw6G014290 Rw6G014310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	359
AciI	CCGC	2 cut(s)	243, 626
AclWI	GGATC	2 cut(s)	93, 573
AcoI	YGGCCR	2 cut(s)	495, 627
AcsI	RAATTY	1 cut(s)	445
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	179, 551
AflIII	ACRYGT	1 cut(s)	378
AgsI	TTSAA	6 cut(s)	63, 313, 324, 373, 737, 792
AjnI	CCWGG	1 cut(s)	561
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	2 cut(s)	316, 395
AluI	AGCT	2 cut(s)	316, 395
Alw26I	GTCTC	1 cut(s)	461
AlwI	GGATC	2 cut(s)	93, 573
AoxI	GGCC	5 cut(s)	26, 170, 482, 495, 627
ApeKI	GCWGC	2 cut(s)	623, 770
ApoI	RAATTY	1 cut(s)	445
AspS9I	GGNCC	2 cut(s)	170, 437
AsuHPI	GGTGA	1 cut(s)	534
AvaII	GGWCC	1 cut(s)	437
AxyI	CCTNAGG	1 cut(s)	174
BalI	TGGCCA	1 cut(s)	497
BanI	GGYRCC	1 cut(s)	359
BbsI	GAAGAC	1 cut(s)	752
BbvI	GCAGC	2 cut(s)	635, 757
BceAI	ACGGC	1 cut(s)	712
BciT130I	CCWGG	1 cut(s)	563
BcoDI	GTCTC	1 cut(s)	461
BfaI	CTAG	4 cut(s)	260, 392, 474, 802
BfmI	CTRYAG	1 cut(s)	621
BisI	GCNGC	3 cut(s)	624, 627, 771
BlsI	GCNGC	3 cut(s)	625, 628, 772
Bme1390I	CCNGG	1 cut(s)	563
Bme18I	GGWCC	1 cut(s)	437
BmgT120I	GGNCC	2 cut(s)	170, 437
BmiI	GGNNCC	3 cut(s)	171, 361, 438
BmrFI	CCNGG	1 cut(s)	563
BpiI	GAAGAC	1 cut(s)	752
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 551
Bse21I	CCTNAGG	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	563
BseGI	GGATG	2 cut(s)	570, 605
BseLI	CCNNNNNNNGG	2 cut(s)	179, 551
BseMII	CTCAG	1 cut(s)	446
BseXI	GCAGC	2 cut(s)	635, 757
BshFI	GGCC	5 cut(s)	28, 172, 484, 497, 629
BshNI	GGYRCC	1 cut(s)	359
BslI	CCNNNNNNNGG	2 cut(s)	179, 551
BsmAI	GTCTC	1 cut(s)	461
BsnI	GGCC	5 cut(s)	28, 172, 484, 497, 629
Bsp143I	GATC	2 cut(s)	85, 565
BspACI	CCGC	2 cut(s)	243, 626
BspANI	GGCC	5 cut(s)	28, 172, 484, 497, 629
BspCNI	CTCAG	1 cut(s)	445
BspLI	GGNNCC	3 cut(s)	171, 361, 438
BspMAI	CTGCAG	1 cut(s)	625
BspPI	GGATC	2 cut(s)	93, 573
BspT107I	GGYRCC	1 cut(s)	359
BssMI	GATC	2 cut(s)	85, 565
Bst2UI	CCWGG	1 cut(s)	563
Bst4CI	ACNGT	2 cut(s)	508, 796
Bst6I	CTCTTC	1 cut(s)	732
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	3 cut(s)	5, 174, 432
BstF5I	GGATG	2 cut(s)	570, 605
BstKTI	GATC	2 cut(s)	88, 568
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	2 cut(s)	85, 565
BstMWI	GCNNNNNNNGC	1 cut(s)	401
BstNI	CCWGG	1 cut(s)	563
BstNSI	RCATGY	1 cut(s)	382
BstSCI	CCNGG	1 cut(s)	561
BstSFI	CTRYAG	1 cut(s)	621
BstV1I	GCAGC	2 cut(s)	635, 757
BstV2I	GAAGAC	1 cut(s)	752
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
Bsu36I	CCTNAGG	1 cut(s)	174
BsuRI	GGCC	5 cut(s)	28, 172, 484, 497, 629
BtsCI	GGATG	2 cut(s)	570, 605
Cac8I	GCNNGC	1 cut(s)	26
Cfr13I	GGNCC	2 cut(s)	170, 437
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	3 cut(s)	286, 379, 652
CviJI	RGCY	8 cut(s)	28, 172, 179, 316, 395, 484, 497, 629
CviKI_1	RGCY	8 cut(s)	28, 172, 179, 316, 395, 484, 497, 629
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	3 cut(s)	5, 174, 432
DpnI	GATC	2 cut(s)	87, 567
DpnII	GATC	2 cut(s)	85, 565
EaeI	YGGCCR	2 cut(s)	495, 627
Eam1104I	CTCTTC	1 cut(s)	732
EarI	CTCTTC	1 cut(s)	732
Eco47I	GGWCC	1 cut(s)	437
Eco81I	CCTNAGG	1 cut(s)	174
EcoO109I	RGGNCCY	2 cut(s)	170, 437
EcoRII	CCWGG	1 cut(s)	561
FaeI	CATG	3 cut(s)	289, 382, 655
FatI	CATG	3 cut(s)	285, 378, 651
FauNDI	CATATG	2 cut(s)	198, 632
Fnu4HI	GCNGC	3 cut(s)	624, 627, 771
FokI	GGATG	2 cut(s)	557, 592
Fsp4HI	GCNGC	3 cut(s)	624, 627, 771
FspBI	CTAG	4 cut(s)	260, 392, 474, 802
GluI	GCNGC	3 cut(s)	624, 627, 771
HaeIII	GGCC	5 cut(s)	28, 172, 484, 497, 629
Hin1II	CATG	3 cut(s)	289, 382, 655
HincII	GTYRAC	1 cut(s)	588
HindII	GTYRAC	1 cut(s)	588
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	4 cut(s)	9, 52, 616, 764
HphI	GGTGA	1 cut(s)	534
Hpy166II	GTNNAC	2 cut(s)	588, 639
Hpy188III	TCNNGA	2 cut(s)	278, 574
Hpy8I	GTNNAC	2 cut(s)	588, 639
Hpy99I	CGWCG	1 cut(s)	733
HpyAV	CCTTC	2 cut(s)	76, 546
HpyCH4III	ACNGT	2 cut(s)	508, 796
HpyCH4V	TGCA	6 cut(s)	38, 209, 404, 428, 512, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	401
HpyF3I	CTNAG	3 cut(s)	5, 174, 432
Hsp92II	CATG	3 cut(s)	289, 382, 655
Kzo9I	GATC	2 cut(s)	85, 565
Lsp1109I	GCAGC	2 cut(s)	635, 757
MaeI	CTAG	4 cut(s)	260, 392, 474, 802
MaeIII	GTNAC	1 cut(s)	781
MalI	GATC	2 cut(s)	87, 567
MboI	GATC	2 cut(s)	85, 565
MboII	GAAGA	7 cut(s)	266, 385, 689, 704, 749, 754, 757
MfeI	CAATTG	1 cut(s)	234
MflI	RGATCY	1 cut(s)	85
MlsI	TGGCCA	1 cut(s)	497
MluCI	AATT	7 cut(s)	33, 147, 234, 445, 513, 577, 645
MluNI	TGGCCA	1 cut(s)	497
MmeI	TCCRAC	1 cut(s)	532
MnlI	CCTC	6 cut(s)	218, 260, 474, 550, 555, 576
Mox20I	TGGCCA	1 cut(s)	497
MscI	TGGCCA	1 cut(s)	497
MseI	TTAA	2 cut(s)	114, 468
Msp20I	TGGCCA	1 cut(s)	497
MspA1I	CMGCKG	1 cut(s)	626
MspR9I	CCNGG	1 cut(s)	563
MunI	CAATTG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	563
MwoI	GCNNNNNNNGC	1 cut(s)	401
NdeI	CATATG	2 cut(s)	198, 632
NdeII	GATC	2 cut(s)	85, 565
NlaIII	CATG	3 cut(s)	289, 382, 655
NlaIV	GGNNCC	3 cut(s)	171, 361, 438
NmuCI	GTSAC	1 cut(s)	781
NspI	RCATGY	1 cut(s)	382
PciI	ACATGT	1 cut(s)	378
PfeI	GAWTC	4 cut(s)	9, 52, 616, 764
PfoI	TCCNGGA	1 cut(s)	561
PkrI	GCNGC	3 cut(s)	625, 628, 772
PpuMI	RGGWCCY	1 cut(s)	437
PscI	ACATGT	1 cut(s)	378
PsiI	TTATAA	1 cut(s)	186
Psp5II	RGGWCCY	1 cut(s)	437
Psp6I	CCWGG	1 cut(s)	561
PspGI	CCWGG	1 cut(s)	561
PspN4I	GGNNCC	3 cut(s)	171, 361, 438
PspPI	GGNCC	2 cut(s)	170, 437
PspPPI	RGGWCCY	1 cut(s)	437
PstI	CTGCAG	1 cut(s)	625
PsuI	RGATCY	1 cut(s)	85
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SaqAI	TTAA	2 cut(s)	114, 468
SatI	GCNGC	3 cut(s)	624, 627, 771
Sau3AI	GATC	2 cut(s)	85, 565
Sau96I	GGNCC	2 cut(s)	170, 437
ScrFI	CCNGG	1 cut(s)	563
SetI	ASST	9 cut(s)	68, 105, 229, 318, 397, 475, 547, 587, 781
SfcI	CTRYAG	1 cut(s)	621
SinI	GGWCC	1 cut(s)	437
Sse9I	AATT	7 cut(s)	33, 147, 234, 445, 513, 577, 645
SsiI	CCGC	2 cut(s)	243, 626
SspI	AATATT	2 cut(s)	249, 348
SspMI	CTAG	4 cut(s)	260, 392, 474, 802
StyD4I	CCNGG	1 cut(s)	561
TaaI	ACNGT	2 cut(s)	508, 796
TaqI	TCGA	1 cut(s)	96
TasI	AATT	7 cut(s)	33, 147, 234, 445, 513, 577, 645
TauI	GCSGC	1 cut(s)	629
TfiI	GAWTC	4 cut(s)	9, 52, 616, 764
Tru1I	TTAA	2 cut(s)	114, 468
Tru9I	TTAA	2 cut(s)	114, 468
TseFI	GTSAC	1 cut(s)	781
TseI	GCWGC	2 cut(s)	623, 770
Tsp45I	GTSAC	1 cut(s)	781
TspDTI	ATGAA	6 cut(s)	86, 95, 274, 640, 690, 705
TspGWI	ACGGA	1 cut(s)	598
VpaK11BI	GGWCC	1 cut(s)	437
XapI	RAATTY	1 cut(s)	445
XceI	RCATGY	1 cut(s)	382
XspI	CTAG	4 cut(s)	260, 392, 474, 802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.