Rroxscaffold_7G00199180

sphingolipid transporter spinster homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001054
Physical Location & Seq
Forward (+)
45174409 .. 45177028
2620 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00199180.1

Sequence Viewer

Length: 297 bp
ATGTGCATACCATCTGGATATGCACTTGGTTATGTTTACGGAGGCTTGGTGGGAACTACTCTTAGTTGGCGTGCTGCATTTTGGGGGGAAGGAATTCTGATGCTCCCATTTGCTATTCTAGGATTTGTTATGAAGCCTTTGCGGATGAAAGGTTTTAAGCATGATGAATCAATTGAAGCATTGACTGTGCAGGAGACGGCTGTCTCAGAAGTTCAAGGTGCTTTGGACCCCAAGGATAGGGCAGTTTCAATGAAGGAAGATGTAACAAATTCTACCATACACAAACCTTCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1 OATP

Protein Analysis

98

Amino Acids

10.69

Weight (kDa)

6.72

Isoelectric Point (pI)

27.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 2 - 57 1.7e-06 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 142
AcsI RAATTY 2 cut(s) 93, 268
AfiI CCNNNNNNNGG 1 cut(s) 237
AgsI TTSAA 3 cut(s) 176, 215, 249
Alw26I GTCTC 2 cut(s) 188, 208
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 2 cut(s) 93, 268
Asp700I GAANNNNTTC 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 226
AvaII GGWCC 1 cut(s) 226
BbvI GCAGC 1 cut(s) 61
BccI CCATC 1 cut(s) 19
BceAI ACGGC 1 cut(s) 213
BcoDI GTCTC 2 cut(s) 188, 208
BfaI CTAG 1 cut(s) 119
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 1 cut(s) 228
BmsI GCATC 1 cut(s) 90
BoxI GACNNNNGTC 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 231
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 237
BseMII CTCAG 1 cut(s) 219
BseXI GCAGC 1 cut(s) 61
BsgI GTGCAG 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 237
BsmAI GTCTC 2 cut(s) 188, 208
BsmBI CGTCTC 1 cut(s) 188
BspACI CCGC 1 cut(s) 142
BspCNI CTCAG 1 cut(s) 218
BspLI GGNNCC 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 231
BssT1I CCWWGG 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 2 cut(s) 62, 205
BstF5I GGATG 1 cut(s) 150
BstMAI GTCTC 2 cut(s) 188, 208
BstPAI GACNNNNGTC 1 cut(s) 200
BstV1I GCAGC 1 cut(s) 61
BtsCI GGATG 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 226
CviAII CATG 1 cut(s) 161
CviJI RGCY 3 cut(s) 45, 136, 200
CviKI_1 RGCY 3 cut(s) 45, 136, 200
DdeI CTNAG 2 cut(s) 62, 205
Eco130I CCWWGG 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 226
EcoRI GAATTC 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 231
Esp3I CGTCTC 1 cut(s) 188
FaeI CATG 1 cut(s) 164
FaiI YATR 6 cut(s) 8, 21, 33, 131, 162, 278
FatI CATG 1 cut(s) 160
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 1 cut(s) 157
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 119
GluI GCNGC 1 cut(s) 75
Hin1II CATG 1 cut(s) 164
HinfI GANTC 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 2 cut(s) 99, 208
Hpy188III TCNNGA 1 cut(s) 15
Hpy8I GTNNAC 1 cut(s) 37
HpyAV CCTTC 3 cut(s) 83, 247, 297
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4V TGCA 4 cut(s) 6, 23, 77, 190
HpyF3I CTNAG 2 cut(s) 62, 205
Hsp92II CATG 1 cut(s) 164
LmnI GCTCC 1 cut(s) 108
LpnPI CCDG 1 cut(s) 176
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 1 cut(s) 90
MaeI CTAG 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 262
MboII GAAGA 1 cut(s) 269
MfeI CAATTG 1 cut(s) 171
MluCI AATT 3 cut(s) 93, 171, 268
MnlI CCTC 1 cut(s) 35
MroXI GAANNNNTTC 1 cut(s) 93
MseI TTAA 1 cut(s) 156
MunI CAATTG 1 cut(s) 171
NlaIII CATG 1 cut(s) 164
NlaIV GGNNCC 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 1 cut(s) 167
PkrI GCNGC 1 cut(s) 76
PshAI GACNNNNGTC 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 1 cut(s) 226
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 1 cut(s) 75
Sau96I GGNCC 1 cut(s) 226
SetI ASST 3 cut(s) 154, 220, 289
SfaNI GCATC 1 cut(s) 90
SgeI CNNG 9 cut(s) 27, 38, 58, 83, 131, 173, 203, 227, 244
SinI GGWCC 1 cut(s) 226
Sse9I AATT 3 cut(s) 93, 171, 268
SsiI CCGC 1 cut(s) 142
SspMI CTAG 1 cut(s) 119
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 1 cut(s) 187
TasI AATT 3 cut(s) 93, 171, 268
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 4 cut(s) 146, 161, 180, 266
TspGWI ACGGA 1 cut(s) 54
VpaK11BI GGWCC 1 cut(s) 226
XapI RAATTY 2 cut(s) 93, 268
XmnI GAANNNNTTC 1 cut(s) 93
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.