Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001054

Physical Location & Seq

Genomic Coordinates Forward (+)

43474756 .. 43478367

Gene Structure 3612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013877

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGAAGGTGCTTTTGATTGAGAAGGTTTATGTTGTTAATGTTCTAGGTTACATAGCGTACAACTTTGTAATTGGTGCATACTCATATTGGGGGCCTAAGGCTGGTTATAATATATATCATATGACTGATGCAGATTTGATATTTGGAGGTATTACAATTGTGTGTGGAATATTGGGTACCGTAGCAGGAGGCTTGCTTTTGGATTTCATGACCAGCAGTATCCCTAATGCTTTCAAGCTTCTTTCAGCAGCTACGTTTTTTGGGGCAATATTTTGCTTCACTGCCTTCTGCTTCTCAAACATGTATGCTTTCCTAGCTCTATTTGCAGTTGGCGAACTACTTGTCTTTGCAACTCAGGGTCCTGTAAATTACATTTGTCTGCACTGTGTTAAACCCAGTATGAGACCACTAGCTATGGCCATGTCTACTGTTTCTATTCATCTTTTTGGGGATGTGCCTTCCTCACCTCTTGTCGGAGTTCTCCAGGATTGCATCAACAATTGGAGGGTGACTGCTCTTATTCTAACATCTATATTCATTCCAGCGGCTGGTATATGGTTTATAGGAATTTTTCTGCCTAGTGTGGATAGATTTAATGAAGAAAGTGAGAATCAGATATCCACAACTGAAAGGTCAAGCATAACTCCTTTGCTTGAAGGGACGAAGACAGAAACGACTGAATCCGCTGCTGAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 OATP

Protein Analysis

233

Amino Acids

25.21

Weight (kDa)

4.93

Isoelectric Point (pI)

32.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OATP	PF03137	1 - 97	2.2e-06	Organic Anion Transporter Polypeptide (OATP) family
OATP	PF03137	96 - 163	3.1e-07	Organic Anion Transporter Polypeptide (OATP) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64500
fragaria_vesca	FvH4_2g10930 FvH4_2g10950 FvH4_2g10950 FvH4_2g10950 FvH4_6g42030
malus_domestica	MD05G1050900.v1.1 MD10G1058300.v1.1 MD12G1201800.v1.1
prunus_persica	Prupe.8G077700_v2.0.a1
pyrus_communis	pycom05g04300 pycom10g04500 pycom12g18820
rosa_chinensis	RchiOBHm_Chr2g0157961 RchiOBHm_Chr6g0269131 RchiOBHm_Chr6g0269161
rosa_laevigata	RLG00000009401 RLG00000013876 RLG00000013877 RLG00000013878 RLG00000013882 RLG00000021038 RLG00000021042
rosa_multiflora	Rmu_sc0000419.1_g000007 Rmu_sc0002120.1_g000003 Rmu_sc0004362.1_g000010 Rmu_ssc0000381.1_g000027
rosa_roxburghii	Rroxscaffold_1G00004920 Rroxscaffold_2G00091820 Rroxscaffold_3G00252830 Rroxscaffold_6G00415270 Rroxscaffold_7G00183520 Rroxscaffold_7G00199000 Rroxscaffold_7G00199020 Rroxscaffold_7G00199180
rosa_rugosa	Rorug02G0464700 Rorug02G0529300 Rorug06G0044900 Rorug06G0044900 Rorug06G0044900 Rorug06G0045000 Rorug06G0045100
rosa_samantha	Rh2AG530300 Rh2BG545000 Rh2CG514700 Rh2DG553200 Rh6AG165700 Rh6BG171100 Rh6BG171300 Rh6CG164700 Rh6CG165000 Rh6DG079900 Rh6DG156200 Rh6DG156600 Rh7AG468700 Rh7BG367400
rosa_wichuraiana	Rw2G043880 Rw6G014240 Rw6G014290 Rw6G014310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	108
Acc65I	GGTACC	1 cut(s)	176
AccB1I	GGYRCC	1 cut(s)	176
AccB7I	CCANNNNNTGG	1 cut(s)	548
AccI	GTMKAC	1 cut(s)	425
AciI	CCGC	2 cut(s)	545, 684
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	567
AfaI	GTAC	2 cut(s)	59, 178
AfiI	CCNNNNNNNGG	3 cut(s)	101, 473, 548
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	2 cut(s)	235, 656
AjnI	CCWGG	1 cut(s)	483
AluBI	AGCT	4 cut(s)	238, 251, 317, 413
AluI	AGCT	4 cut(s)	238, 251, 317, 413
Alw26I	GTCTC	1 cut(s)	397
AlwNI	CAGNNNCTG	1 cut(s)	548
AoxI	GGCC	2 cut(s)	92, 417
ApeKI	GCWGC	2 cut(s)	248, 686
ApoI	RAATTY	1 cut(s)	567
ArsI	GACNNNNNNTTYG	2 cut(s)	327, 359
Asp718I	GGTACC	1 cut(s)	176
AspS9I	GGNCC	2 cut(s)	92, 359
AsuHPI	GGTGA	2 cut(s)	456, 520
AvaII	GGWCC	1 cut(s)	359
AxyI	CCTNAGG	1 cut(s)	96
BalI	TGGCCA	1 cut(s)	419
BanI	GGYRCC	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	671
BbvI	GCAGC	2 cut(s)	260, 673
BciT130I	CCWGG	1 cut(s)	485
BciVI	GTATCC	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	397
BfaI	CTAG	4 cut(s)	44, 314, 410, 579
BfuI	GTATCC	1 cut(s)	230
BisI	GCNGC	3 cut(s)	249, 546, 687
BlsI	GCNGC	3 cut(s)	250, 547, 688
Bme1390I	CCNGG	1 cut(s)	485
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	2 cut(s)	92, 359
BmiI	GGNNCC	3 cut(s)	93, 178, 360
BmrFI	CCNGG	1 cut(s)	485
BmrI	ACTGGG	1 cut(s)	390
BmsI	GCATC	2 cut(s)	118, 501
BmuI	ACTGGG	1 cut(s)	390
BpiI	GAAGAC	1 cut(s)	671
BpmI	CTGGAG	1 cut(s)	467
BsaI	GGTCTC	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 473, 548
Bse1I	ACTGG	1 cut(s)	396
Bse21I	CCTNAGG	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	485
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	3 cut(s)	101, 473, 548
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	1 cut(s)	396
BseXI	GCAGC	2 cut(s)	260, 673
BsgI	GTGCAG	1 cut(s)	365
BshFI	GGCC	2 cut(s)	94, 419
BshNI	GGYRCC	1 cut(s)	176
BslFI	GGGAC	1 cut(s)	673
BslI	CCNNNNNNNGG	3 cut(s)	101, 473, 548
BsmAI	GTCTC	1 cut(s)	397
BsmFI	GGGAC	1 cut(s)	673
BsnI	GGCC	2 cut(s)	94, 419
Bso31I	GGTCTC	1 cut(s)	397
BspACI	CCGC	2 cut(s)	545, 684
BspANI	GGCC	2 cut(s)	94, 419
BspCNI	CTCAG	1 cut(s)	367
BspHI	TCATGA	1 cut(s)	207
BspLI	GGNNCC	3 cut(s)	93, 178, 360
BspT107I	GGYRCC	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	396
Bst2UI	CCWGG	1 cut(s)	485
Bst4CI	ACNGT	3 cut(s)	181, 386, 430
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	96, 354
BstF5I	GGATG	1 cut(s)	457
BstMAI	GTCTC	1 cut(s)	397
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 323
BstNI	CCWGG	1 cut(s)	485
BstNSI	RCATGY	1 cut(s)	304
BstSCI	CCNGG	1 cut(s)	483
BstV1I	GCAGC	2 cut(s)	260, 673
BstV2I	GAAGAC	1 cut(s)	671
Bsu36I	CCTNAGG	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	230
BsuRI	GGCC	2 cut(s)	94, 419
BtsCI	GGATG	1 cut(s)	457
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	2 cut(s)	279, 382
Cac8I	GCNNGC	1 cut(s)	194
CaiI	CAGNNNCTG	1 cut(s)	548
CciI	TCATGA	1 cut(s)	207
Cfr13I	GGNCC	2 cut(s)	92, 359
Csp6I	GTAC	2 cut(s)	58, 177
CviAII	CATG	3 cut(s)	208, 301, 421
CviJI	RGCY	9 cut(s)	94, 101, 192, 238, 251, 317, 413, 419, 548
CviKI_1	RGCY	9 cut(s)	94, 101, 192, 238, 251, 317, 413, 419, 548
CviQI	GTAC	2 cut(s)	58, 177
DdeI	CTNAG	2 cut(s)	96, 354
EaeI	YGGCCR	1 cut(s)	417
Eco31I	GGTCTC	1 cut(s)	397
Eco32I	GATATC	1 cut(s)	618
Eco47I	GGWCC	1 cut(s)	359
Eco81I	CCTNAGG	1 cut(s)	96
EcoO109I	RGGNCCY	2 cut(s)	92, 359
EcoRII	CCWGG	1 cut(s)	483
EcoRV	GATATC	1 cut(s)	618
FaeI	CATG	3 cut(s)	211, 304, 424
FaqI	GGGAC	1 cut(s)	673
FatI	CATG	3 cut(s)	207, 300, 420
FauNDI	CATATG	1 cut(s)	120
FblI	GTMKAC	1 cut(s)	425
Fnu4HI	GCNGC	3 cut(s)	249, 546, 687
FokI	GGATG	1 cut(s)	464
Fsp4HI	GCNGC	3 cut(s)	249, 546, 687
FspBI	CTAG	4 cut(s)	44, 314, 410, 579
GluI	GCNGC	3 cut(s)	249, 546, 687
GsuI	CTGGAG	1 cut(s)	467
HaeIII	GGCC	2 cut(s)	94, 419
Hin1II	CATG	3 cut(s)	211, 304, 424
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	2 cut(s)	610, 680
HphI	GGTGA	2 cut(s)	456, 520
Hpy166II	GTNNAC	1 cut(s)	426
Hpy188I	TCNGA	2 cut(s)	476, 615
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	1 cut(s)	426
HpyAV	CCTTC	4 cut(s)	16, 295, 468, 650
HpyCH4III	ACNGT	3 cut(s)	181, 386, 430
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	6 cut(s)	77, 131, 326, 350, 382, 492
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 323
HpyF3I	CTNAG	2 cut(s)	96, 354
HpySE526I	ACGT	1 cut(s)	254
Hsp92II	CATG	3 cut(s)	211, 304, 424
KpnI	GGTACC	1 cut(s)	180
Lsp1109I	GCAGC	2 cut(s)	260, 673
LweI	GCATC	2 cut(s)	118, 501
MaeI	CTAG	4 cut(s)	44, 314, 410, 579
MaeII	ACGT	1 cut(s)	254
MaeIII	GTNAC	2 cut(s)	47, 508
MboII	GAAGA	2 cut(s)	611, 676
MfeI	CAATTG	2 cut(s)	156, 499
MlsI	TGGCCA	1 cut(s)	419
MluCI	AATT	5 cut(s)	69, 156, 367, 499, 567
MluNI	TGGCCA	1 cut(s)	419
MmeI	TCCRAC	1 cut(s)	454
MnlI	CCTC	5 cut(s)	140, 182, 472, 477, 498
Mox20I	TGGCCA	1 cut(s)	419
MscI	TGGCCA	1 cut(s)	419
MseI	TTAA	3 cut(s)	36, 390, 594
Msp20I	TGGCCA	1 cut(s)	419
MspA1I	CMGCKG	2 cut(s)	545, 686
MspR9I	CCNGG	1 cut(s)	485
MunI	CAATTG	2 cut(s)	156, 499
MvaI	CCWGG	1 cut(s)	485
MwoI	GCNNNNNNNGC	2 cut(s)	314, 323
NdeI	CATATG	1 cut(s)	120
NlaIII	CATG	3 cut(s)	211, 304, 424
NlaIV	GGNNCC	3 cut(s)	93, 178, 360
NmuCI	GTSAC	1 cut(s)	508
NspI	RCATGY	1 cut(s)	304
PagI	TCATGA	1 cut(s)	207
PciI	ACATGT	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	610, 680
PflMI	CCANNNNNTGG	1 cut(s)	548
PfoI	TCCNGGA	1 cut(s)	483
PkrI	GCNGC	3 cut(s)	250, 547, 688
PpuMI	RGGWCCY	1 cut(s)	359
PscI	ACATGT	1 cut(s)	300
PsiI	TTATAA	1 cut(s)	108
Psp5II	RGGWCCY	1 cut(s)	359
Psp6I	CCWGG	1 cut(s)	483
PspGI	CCWGG	1 cut(s)	483
PspN4I	GGNNCC	3 cut(s)	93, 178, 360
PspPI	GGNCC	2 cut(s)	92, 359
PspPPI	RGGWCCY	1 cut(s)	359
PstNI	CAGNNNCTG	1 cut(s)	548
RsaI	GTAC	2 cut(s)	59, 178
RsaNI	GTAC	2 cut(s)	58, 177
SaqAI	TTAA	3 cut(s)	36, 390, 594
SatI	GCNGC	3 cut(s)	249, 546, 687
Sau96I	GGNCC	2 cut(s)	92, 359
ScrFI	CCNGG	1 cut(s)	485
SfaNI	GCATC	2 cut(s)	118, 501
SinI	GGWCC	1 cut(s)	359
Sse9I	AATT	5 cut(s)	69, 156, 367, 499, 567
SsiI	CCGC	2 cut(s)	545, 684
SspI	AATATT	2 cut(s)	171, 270
SspMI	CTAG	4 cut(s)	44, 314, 410, 579
StyD4I	CCNGG	1 cut(s)	483
TaaI	ACNGT	3 cut(s)	181, 386, 430
TaiI	ACGT	1 cut(s)	257
TasI	AATT	5 cut(s)	69, 156, 367, 499, 567
TauI	GCSGC	1 cut(s)	548
TfiI	GAWTC	2 cut(s)	610, 680
Tru1I	TTAA	3 cut(s)	36, 390, 594
Tru9I	TTAA	3 cut(s)	36, 390, 594
TscAI	CASTG	2 cut(s)	286, 389
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	2 cut(s)	248, 686
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	5 cut(s)	17, 196, 428, 526, 612
TspRI	CASTG	2 cut(s)	286, 389
Van91I	CCANNNNNTGG	1 cut(s)	548
VpaK11BI	GGWCC	1 cut(s)	359
XapI	RAATTY	1 cut(s)	567
XceI	RCATGY	1 cut(s)	304
XmiI	GTMKAC	1 cut(s)	425
XspI	CTAG	4 cut(s)	44, 314, 410, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.