Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001054

Physical Location & Seq

Genomic Coordinates Reverse (-)

22369757 .. 22373186

Gene Structure 3430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG165000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGAAGGTGCTTTTGATTGAGAAGGTTTATGTTGTTAATGTTCTAGGTTACATAGCGTACAACTTTGTAATTGGTGCGTACTCATATTGGGGGCCTAAGGCTGGTTATAATATATATCATATGACTGATGCAGATTTGATATTTGGAGGTATTACAATTGTGTGTGGAATATTGGGTACCGTAGCAGGAGGCTTTCTTTTGGATTTCATGACCAGCAGTATCCCTAATGCTTTCAAGCTTCTTTCAGCAGCTACGTTTTTTGGGGCAATATTTTGCTTCAGTGCCTTTTGCTTCTCAAACATGTATGCTTTCCTAGCTCTATTTGCAGTTGGCGAACTACTTGTCTTTGCAACTCAGGGTCCTGTAAATTACATTTGTCTGCACTGTGTTAAACCTAGTATGAGACCACTAGCTATGGCCATGTCTACTGTTTCTATTCATCTTTTTGGGGATGTGCCTTCCTCACCTCTTGTCGGAGTTCTCGAGGATTGCATCAACAATTGGAGGGTGACTGCTCTTATTCTAACATCTATATTCATTCCAGCGGCTGGTATATGGTTTATAGGAATTTTTCTGCCTAGTGTGGATAGATTTAATGAAGAAAGTGAGAATCAGATATCCACAACTGAAAGGTCAAGCATAACTCCTTTGCTTGAAGGGACGAAGACAGAAACGACTGGATCCGCTGCTGAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 OATP

Protein Analysis

232

Amino Acids

25.16

Weight (kDa)

4.93

Isoelectric Point (pI)

28.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OATP	PF03137	1 - 97	1.7e-06	Organic Anion Transporter Polypeptide (OATP) family
OATP	PF03137	97 - 163	3.8e-07	Organic Anion Transporter Polypeptide (OATP) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64500
fragaria_vesca	FvH4_2g10930 FvH4_2g10950 FvH4_2g10950 FvH4_2g10950 FvH4_6g42030
malus_domestica	MD05G1050900.v1.1 MD10G1058300.v1.1 MD12G1201800.v1.1
prunus_persica	Prupe.8G077700_v2.0.a1
pyrus_communis	pycom05g04300 pycom10g04500 pycom12g18820
rosa_chinensis	RchiOBHm_Chr2g0157961 RchiOBHm_Chr6g0269131 RchiOBHm_Chr6g0269161
rosa_laevigata	RLG00000009401 RLG00000013876 RLG00000013877 RLG00000013878 RLG00000013882 RLG00000021038 RLG00000021042
rosa_multiflora	Rmu_sc0000419.1_g000007 Rmu_sc0002120.1_g000003 Rmu_sc0004362.1_g000010 Rmu_ssc0000381.1_g000027
rosa_roxburghii	Rroxscaffold_1G00004920 Rroxscaffold_2G00091820 Rroxscaffold_3G00252830 Rroxscaffold_6G00415270 Rroxscaffold_7G00183520 Rroxscaffold_7G00199000 Rroxscaffold_7G00199020 Rroxscaffold_7G00199180
rosa_rugosa	Rorug02G0464700 Rorug02G0529300 Rorug06G0044900 Rorug06G0044900 Rorug06G0044900 Rorug06G0045000 Rorug06G0045100
rosa_samantha	Rh2AG530300 Rh2BG545000 Rh2CG514700 Rh2DG553200 Rh6AG165700 Rh6BG171100 Rh6BG171300 Rh6CG164700 Rh6CG165000 Rh6DG079900 Rh6DG156200 Rh6DG156600 Rh7AG468700 Rh7BG367400
rosa_wichuraiana	Rw2G043880 Rw6G014240 Rw6G014290 Rw6G014310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	108
Acc65I	GGTACC	1 cut(s)	176
AccB1I	GGYRCC	1 cut(s)	176
AccB7I	CCANNNNNTGG	1 cut(s)	548
AccI	GTMKAC	1 cut(s)	425
AciI	CCGC	2 cut(s)	545, 684
AclWI	GGATC	2 cut(s)	675, 688
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	567
AcuI	CTGAAG	1 cut(s)	262
AfaI	GTAC	3 cut(s)	59, 80, 178
AfiI	CCNNNNNNNGG	3 cut(s)	101, 473, 548
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	2 cut(s)	235, 656
AluBI	AGCT	4 cut(s)	238, 251, 317, 413
AluI	AGCT	4 cut(s)	238, 251, 317, 413
Alw26I	GTCTC	1 cut(s)	397
AlwI	GGATC	2 cut(s)	675, 688
AlwNI	CAGNNNCTG	1 cut(s)	548
Ama87I	CYCGRG	1 cut(s)	482
AoxI	GGCC	2 cut(s)	92, 417
ApeKI	GCWGC	2 cut(s)	248, 686
ApoI	RAATTY	1 cut(s)	567
ArsI	GACNNNNNNTTYG	2 cut(s)	327, 359
Asp718I	GGTACC	1 cut(s)	176
AspS9I	GGNCC	2 cut(s)	92, 359
AsuHPI	GGTGA	2 cut(s)	456, 520
AvaI	CYCGRG	1 cut(s)	482
AvaII	GGWCC	1 cut(s)	359
AxyI	CCTNAGG	1 cut(s)	96
BalI	TGGCCA	1 cut(s)	419
BamHI	GGATCC	1 cut(s)	680
BanI	GGYRCC	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	671
BbvI	GCAGC	2 cut(s)	260, 673
BciVI	GTATCC	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	397
BfaI	CTAG	5 cut(s)	44, 314, 396, 410, 579
BfuI	GTATCC	1 cut(s)	230
BisI	GCNGC	3 cut(s)	249, 546, 687
BlsI	GCNGC	3 cut(s)	250, 547, 688
Bme18I	GGWCC	1 cut(s)	359
BmeT110I	CYCGRG	1 cut(s)	482
BmgT120I	GGNCC	2 cut(s)	92, 359
BmiI	GGNNCC	4 cut(s)	93, 178, 360, 682
BmsI	GCATC	2 cut(s)	118, 501
BpiI	GAAGAC	1 cut(s)	671
BsaI	GGTCTC	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 473, 548
Bse1I	ACTGG	1 cut(s)	682
Bse21I	CCTNAGG	1 cut(s)	96
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	3 cut(s)	101, 473, 548
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	1 cut(s)	682
BseXI	GCAGC	2 cut(s)	260, 673
BsgI	GTGCAG	1 cut(s)	365
BshFI	GGCC	2 cut(s)	94, 419
BshNI	GGYRCC	1 cut(s)	176
BsiHKCI	CYCGRG	1 cut(s)	482
BslFI	GGGAC	1 cut(s)	673
BslI	CCNNNNNNNGG	3 cut(s)	101, 473, 548
BsmAI	GTCTC	1 cut(s)	397
BsmFI	GGGAC	1 cut(s)	673
BsnI	GGCC	2 cut(s)	94, 419
Bso31I	GGTCTC	1 cut(s)	397
BsoBI	CYCGRG	1 cut(s)	482
Bsp143I	GATC	1 cut(s)	680
BspACI	CCGC	2 cut(s)	545, 684
BspANI	GGCC	2 cut(s)	94, 419
BspCNI	CTCAG	1 cut(s)	367
BspHI	TCATGA	1 cut(s)	207
BspLI	GGNNCC	4 cut(s)	93, 178, 360, 682
BspPI	GGATC	2 cut(s)	675, 688
BspT107I	GGYRCC	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	682
BssMI	GATC	1 cut(s)	680
Bst4CI	ACNGT	3 cut(s)	181, 386, 430
BstDEI	CTNAG	2 cut(s)	96, 354
BstF5I	GGATG	1 cut(s)	457
BstKTI	GATC	1 cut(s)	683
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	1 cut(s)	680
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 323
BstNSI	RCATGY	1 cut(s)	304
BstV1I	GCAGC	2 cut(s)	260, 673
BstV2I	GAAGAC	1 cut(s)	671
BstX2I	RGATCY	1 cut(s)	680
BstYI	RGATCY	1 cut(s)	680
Bsu36I	CCTNAGG	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	230
BsuRI	GGCC	2 cut(s)	94, 419
BtsCI	GGATG	1 cut(s)	457
BtsIMutI	CAGTG	2 cut(s)	286, 382
CaiI	CAGNNNCTG	1 cut(s)	548
CciI	TCATGA	1 cut(s)	207
Cfr13I	GGNCC	2 cut(s)	92, 359
Csp6I	GTAC	3 cut(s)	58, 79, 177
CviAII	CATG	3 cut(s)	208, 301, 421
CviJI	RGCY	9 cut(s)	94, 101, 192, 238, 251, 317, 413, 419, 548
CviKI_1	RGCY	9 cut(s)	94, 101, 192, 238, 251, 317, 413, 419, 548
CviQI	GTAC	3 cut(s)	58, 79, 177
DdeI	CTNAG	2 cut(s)	96, 354
DpnI	GATC	1 cut(s)	682
DpnII	GATC	1 cut(s)	680
EaeI	YGGCCR	1 cut(s)	417
Eco31I	GGTCTC	1 cut(s)	397
Eco32I	GATATC	1 cut(s)	618
Eco47I	GGWCC	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	262
Eco81I	CCTNAGG	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	482
EcoO109I	RGGNCCY	2 cut(s)	92, 359
EcoRV	GATATC	1 cut(s)	618
FaeI	CATG	3 cut(s)	211, 304, 424
FaqI	GGGAC	1 cut(s)	673
FatI	CATG	3 cut(s)	207, 300, 420
FauNDI	CATATG	1 cut(s)	120
FblI	GTMKAC	1 cut(s)	425
Fnu4HI	GCNGC	3 cut(s)	249, 546, 687
FokI	GGATG	1 cut(s)	464
Fsp4HI	GCNGC	3 cut(s)	249, 546, 687
FspBI	CTAG	5 cut(s)	44, 314, 396, 410, 579
GluI	GCNGC	3 cut(s)	249, 546, 687
HaeIII	GGCC	2 cut(s)	94, 419
Hin1II	CATG	3 cut(s)	211, 304, 424
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	1 cut(s)	610
HphI	GGTGA	2 cut(s)	456, 520
Hpy166II	GTNNAC	1 cut(s)	426
Hpy188I	TCNGA	2 cut(s)	476, 615
Hpy188III	TCNNGA	2 cut(s)	208, 482
Hpy8I	GTNNAC	1 cut(s)	426
HpyAV	CCTTC	3 cut(s)	16, 468, 650
HpyCH4III	ACNGT	3 cut(s)	181, 386, 430
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	5 cut(s)	131, 326, 350, 382, 492
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 323
HpyF3I	CTNAG	2 cut(s)	96, 354
HpySE526I	ACGT	1 cut(s)	254
Hsp92II	CATG	3 cut(s)	211, 304, 424
KpnI	GGTACC	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	680
LpnPI	CCDG	8 cut(s)	87, 171, 226, 341, 375, 534, 555, 663
Lsp1109I	GCAGC	2 cut(s)	260, 673
LweI	GCATC	2 cut(s)	118, 501
MaeI	CTAG	5 cut(s)	44, 314, 396, 410, 579
MaeII	ACGT	1 cut(s)	254
MaeIII	GTNAC	2 cut(s)	47, 508
MalI	GATC	1 cut(s)	682
MboI	GATC	1 cut(s)	680
MboII	GAAGA	2 cut(s)	611, 676
MfeI	CAATTG	2 cut(s)	156, 499
MflI	RGATCY	1 cut(s)	680
MlsI	TGGCCA	1 cut(s)	419
MluCI	AATT	5 cut(s)	69, 156, 367, 499, 567
MluNI	TGGCCA	1 cut(s)	419
MmeI	TCCRAC	1 cut(s)	454
MnlI	CCTC	6 cut(s)	140, 182, 472, 477, 478, 498
Mox20I	TGGCCA	1 cut(s)	419
MscI	TGGCCA	1 cut(s)	419
MseI	TTAA	3 cut(s)	36, 390, 594
Msp20I	TGGCCA	1 cut(s)	419
MspA1I	CMGCKG	2 cut(s)	545, 686
MunI	CAATTG	2 cut(s)	156, 499
MwoI	GCNNNNNNNGC	2 cut(s)	314, 323
NdeI	CATATG	1 cut(s)	120
NdeII	GATC	1 cut(s)	680
NlaIII	CATG	3 cut(s)	211, 304, 424
NlaIV	GGNNCC	4 cut(s)	93, 178, 360, 682
NmuCI	GTSAC	1 cut(s)	508
NspI	RCATGY	1 cut(s)	304
PaeR7I	CTCGAG	1 cut(s)	482
PagI	TCATGA	1 cut(s)	207
PciI	ACATGT	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	480
PfeI	GAWTC	1 cut(s)	610
PflMI	CCANNNNNTGG	1 cut(s)	548
PkrI	GCNGC	3 cut(s)	250, 547, 688
PpuMI	RGGWCCY	1 cut(s)	359
PscI	ACATGT	1 cut(s)	300
PsiI	TTATAA	1 cut(s)	108
Psp5II	RGGWCCY	1 cut(s)	359
PspN4I	GGNNCC	4 cut(s)	93, 178, 360, 682
PspPI	GGNCC	2 cut(s)	92, 359
PspPPI	RGGWCCY	1 cut(s)	359
PstNI	CAGNNNCTG	1 cut(s)	548
PsuI	RGATCY	1 cut(s)	680
RsaI	GTAC	3 cut(s)	59, 80, 178
RsaNI	GTAC	3 cut(s)	58, 79, 177
SaqAI	TTAA	3 cut(s)	36, 390, 594
SatI	GCNGC	3 cut(s)	249, 546, 687
Sau3AI	GATC	1 cut(s)	680
Sau96I	GGNCC	2 cut(s)	92, 359
SfaNI	GCATC	2 cut(s)	118, 501
Sfr274I	CTCGAG	1 cut(s)	482
SinI	GGWCC	1 cut(s)	359
SlaI	CTCGAG	1 cut(s)	482
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	5 cut(s)	69, 156, 367, 499, 567
SsiI	CCGC	2 cut(s)	545, 684
SspI	AATATT	2 cut(s)	171, 270
SspMI	CTAG	5 cut(s)	44, 314, 396, 410, 579
TaaI	ACNGT	3 cut(s)	181, 386, 430
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	1 cut(s)	483
TasI	AATT	5 cut(s)	69, 156, 367, 499, 567
TauI	GCSGC	1 cut(s)	548
TfiI	GAWTC	1 cut(s)	610
Tru1I	TTAA	3 cut(s)	36, 390, 594
Tru9I	TTAA	3 cut(s)	36, 390, 594
TscAI	CASTG	2 cut(s)	286, 389
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	2 cut(s)	248, 686
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	5 cut(s)	17, 196, 428, 526, 612
TspRI	CASTG	2 cut(s)	286, 389
Van91I	CCANNNNNTGG	1 cut(s)	548
VpaK11BI	GGWCC	1 cut(s)	359
XapI	RAATTY	1 cut(s)	567
XceI	RCATGY	1 cut(s)	304
XhoI	CTCGAG	1 cut(s)	482
XmiI	GTMKAC	1 cut(s)	425
XspI	CTAG	5 cut(s)	44, 314, 396, 410, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.