Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002120.1

Orthogroup ID

OG0001054

Physical Location & Seq

Genomic Coordinates Reverse (-)

5699 .. 8776

Gene Structure 3078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002120.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atgcaagacggtcgggaaaggaccgaggctttagtctcggaaggtgacgcctctgtcattgtatcatggccaaaaattgcaacaaaaataaagaatcatctttcaaggttcatgaaagatatgaaggatcttttggtcgataaggtttatgttgttaatgttcttggttatgtagcatacaactttgtacttggttcgtactcatattgggggcctaaggctggttataatatctatcatatgactaatgcagatatgatttttggaggtattacaattgtgtgcggaatattgggaacactagcaggaggctttcttctggatttcatgtctaacactatgtccaatgctttcaagcttctttcaacagcaacgctttttggggcaatattatgctttggtgccttttgcttgaagaacatgtatggtttcctagctctttttgcagttgggcaactacttctctttgcaactcagggtcctgtaaattttgtttgtctccattgtgttaaacctagtttgaggccactatctatggccatttctactgttgcaattcacatatttggagatgtgccttcctcacctcttgttggagttgtccaggatcacatccagaattggaggtcaactgctcttattctaacatccgttttgattcctgcagcggccatatggtttacagcaattttcatggacagcgtggatagatatgacgaagaaagtgatgatgaagaaagtgatgatgagatagaaacaactgaaatgccgtcgcttgaagagaagaagacagtgaaaacaactgaatctgctgctcaacctgtcacatattcaactgttgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 OATP

Protein Analysis

281

Amino Acids

30.84

Weight (kDa)

4.9

Isoelectric Point (pI)

37.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64500
fragaria_vesca	FvH4_2g10930 FvH4_2g10950 FvH4_2g10950 FvH4_2g10950 FvH4_6g42030
malus_domestica	MD05G1050900.v1.1 MD10G1058300.v1.1 MD12G1201800.v1.1
prunus_persica	Prupe.8G077700_v2.0.a1
pyrus_communis	pycom05g04300 pycom10g04500 pycom12g18820
rosa_chinensis	RchiOBHm_Chr2g0157961 RchiOBHm_Chr6g0269131 RchiOBHm_Chr6g0269161
rosa_laevigata	RLG00000009401 RLG00000013876 RLG00000013877 RLG00000013878 RLG00000013882 RLG00000021038 RLG00000021042
rosa_multiflora	Rmu_sc0000419.1_g000007 Rmu_sc0002120.1_g000003 Rmu_sc0004362.1_g000010 Rmu_ssc0000381.1_g000027
rosa_roxburghii	Rroxscaffold_1G00004920 Rroxscaffold_2G00091820 Rroxscaffold_3G00252830 Rroxscaffold_6G00415270 Rroxscaffold_7G00183520 Rroxscaffold_7G00199000 Rroxscaffold_7G00199020 Rroxscaffold_7G00199180
rosa_rugosa	Rorug02G0464700 Rorug02G0529300 Rorug06G0044900 Rorug06G0044900 Rorug06G0044900 Rorug06G0045000 Rorug06G0045100
rosa_samantha	Rh2AG530300 Rh2BG545000 Rh2CG514700 Rh2DG553200 Rh6AG165700 Rh6BG171100 Rh6BG171300 Rh6CG164700 Rh6CG165000 Rh6DG079900 Rh6DG156200 Rh6DG156600 Rh7AG468700 Rh7BG367400
rosa_wichuraiana	Rw2G043880 Rw6G014240 Rw6G014290 Rw6G014310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	228
AasI	GACNNNNNNGTC	1 cut(s)	53
AccB1I	GGYRCC	1 cut(s)	401
AciI	CCGC	2 cut(s)	285, 668
AclWI	GGATC	2 cut(s)	135, 615
AcoI	YGGCCR	3 cut(s)	68, 537, 669
AcsI	RAATTY	1 cut(s)	487
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	2 cut(s)	189, 200
AfiI	CCNNNNNNNGG	2 cut(s)	221, 593
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	6 cut(s)	105, 355, 366, 415, 779, 834
AjnI	CCWGG	1 cut(s)	603
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	2 cut(s)	358, 437
AluI	AGCT	2 cut(s)	358, 437
Alw26I	GTCTC	2 cut(s)	40, 503
AlwI	GGATC	2 cut(s)	135, 615
AoxI	GGCC	5 cut(s)	68, 212, 524, 537, 669
ApeKI	GCWGC	2 cut(s)	665, 812
ApoI	RAATTY	1 cut(s)	487
AspS9I	GGNCC	3 cut(s)	21, 212, 479
AsuHPI	GGTGA	2 cut(s)	56, 576
AvaII	GGWCC	2 cut(s)	21, 479
AxyI	CCTNAGG	1 cut(s)	216
BalI	TGGCCA	2 cut(s)	70, 539
BanI	GGYRCC	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	794
BbvI	GCAGC	2 cut(s)	677, 799
BceAI	ACGGC	1 cut(s)	754
BcgI	CGANNNNNNTGC	1 cut(s)	27
BciT130I	CCWGG	1 cut(s)	605
BcoDI	GTCTC	2 cut(s)	40, 503
BfaI	CTAG	4 cut(s)	302, 434, 516, 844
BfmI	CTRYAG	1 cut(s)	663
BisI	GCNGC	3 cut(s)	666, 669, 813
BlsI	GCNGC	3 cut(s)	667, 670, 814
Bme1390I	CCNGG	1 cut(s)	605
Bme18I	GGWCC	2 cut(s)	21, 479
BmgT120I	GGNCC	3 cut(s)	21, 212, 479
BmiI	GGNNCC	3 cut(s)	213, 403, 480
BmrFI	CCNGG	1 cut(s)	605
BpiI	GAAGAC	1 cut(s)	794
BsaHI	GRCGYC	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 593
Bse21I	CCTNAGG	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	605
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	2 cut(s)	612, 647
BseLI	CCNNNNNNNGG	2 cut(s)	221, 593
BseMII	CTCAG	1 cut(s)	488
BseXI	GCAGC	2 cut(s)	677, 799
Bsh1285I	CGRYCG	1 cut(s)	13
BshFI	GGCC	5 cut(s)	70, 214, 526, 539, 671
BshNI	GGYRCC	1 cut(s)	401
BsiEI	CGRYCG	1 cut(s)	13
BslI	CCNNNNNNNGG	2 cut(s)	221, 593
BsmAI	GTCTC	2 cut(s)	40, 503
BsnI	GGCC	5 cut(s)	70, 214, 526, 539, 671
Bsp143I	GATC	2 cut(s)	127, 607
BspACI	CCGC	2 cut(s)	285, 668
BspANI	GGCC	5 cut(s)	70, 214, 526, 539, 671
BspCNI	CTCAG	1 cut(s)	487
BspHI	TCATGA	1 cut(s)	111
BspLI	GGNNCC	3 cut(s)	213, 403, 480
BspMAI	CTGCAG	1 cut(s)	667
BspPI	GGATC	2 cut(s)	135, 615
BspT107I	GGYRCC	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	2 cut(s)	127, 607
BssNI	GRCGYC	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	605
Bst4CI	ACNGT	4 cut(s)	11, 550, 793, 838
Bst6I	CTCTTC	1 cut(s)	774
BstACI	GRCGYC	1 cut(s)	48
BstDEI	CTNAG	2 cut(s)	216, 474
BstF5I	GGATG	2 cut(s)	612, 647
BstKTI	GATC	2 cut(s)	130, 610
BstMAI	GTCTC	2 cut(s)	40, 503
BstMBI	GATC	2 cut(s)	127, 607
BstMCI	CGRYCG	1 cut(s)	13
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstNI	CCWGG	1 cut(s)	605
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	1 cut(s)	603
BstSFI	CTRYAG	1 cut(s)	663
BstV1I	GCAGC	2 cut(s)	677, 799
BstV2I	GAAGAC	1 cut(s)	794
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
Bsu36I	CCTNAGG	1 cut(s)	216
BsuRI	GGCC	5 cut(s)	70, 214, 526, 539, 671
BtsCI	GGATG	2 cut(s)	612, 647
BtsIMutI	CAGTG	1 cut(s)	798
CciI	TCATGA	1 cut(s)	111
Cfr13I	GGNCC	3 cut(s)	21, 212, 479
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	2 cut(s)	188, 199
CviAII	CATG	5 cut(s)	66, 112, 328, 421, 694
CviQI	GTAC	2 cut(s)	188, 199
DdeI	CTNAG	2 cut(s)	216, 474
DpnI	GATC	2 cut(s)	129, 609
DpnII	GATC	2 cut(s)	127, 607
DrdI	GACNNNNNNGTC	1 cut(s)	53
DseDI	GACNNNNNNGTC	1 cut(s)	53
EaeI	YGGCCR	3 cut(s)	68, 537, 669
Eam1104I	CTCTTC	1 cut(s)	774
EarI	CTCTTC	1 cut(s)	774
Eco47I	GGWCC	2 cut(s)	21, 479
Eco81I	CCTNAGG	1 cut(s)	216
EcoO109I	RGGNCCY	2 cut(s)	212, 479
EcoRII	CCWGG	1 cut(s)	603
FaeI	CATG	5 cut(s)	69, 115, 331, 424, 697
FatI	CATG	5 cut(s)	65, 111, 327, 420, 693
FauNDI	CATATG	2 cut(s)	240, 674
Fnu4HI	GCNGC	3 cut(s)	666, 669, 813
FokI	GGATG	2 cut(s)	599, 634
Fsp4HI	GCNGC	3 cut(s)	666, 669, 813
FspBI	CTAG	4 cut(s)	302, 434, 516, 844
GluI	GCNGC	3 cut(s)	666, 669, 813
HaeIII	GGCC	5 cut(s)	70, 214, 526, 539, 671
HgaI	GACGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	5 cut(s)	69, 115, 331, 424, 697
HincII	GTYRAC	1 cut(s)	630
HindII	GTYRAC	1 cut(s)	630
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	3 cut(s)	94, 658, 806
HphI	GGTGA	2 cut(s)	56, 576
Hpy166II	GTNNAC	2 cut(s)	630, 681
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	4 cut(s)	14, 112, 320, 616
Hpy8I	GTNNAC	2 cut(s)	630, 681
Hpy99I	CGWCG	1 cut(s)	775
HpyAV	CCTTC	3 cut(s)	35, 118, 588
HpyCH4III	ACNGT	4 cut(s)	11, 550, 793, 838
HpyCH4V	TGCA	7 cut(s)	4, 80, 251, 446, 470, 554, 665
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
HpyF3I	CTNAG	2 cut(s)	216, 474
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	5 cut(s)	69, 115, 331, 424, 697
Kzo9I	GATC	2 cut(s)	127, 607
Lsp1109I	GCAGC	2 cut(s)	677, 799
MaeI	CTAG	4 cut(s)	302, 434, 516, 844
MaeIII	GTNAC	2 cut(s)	44, 823
MalI	GATC	2 cut(s)	129, 609
MboI	GATC	2 cut(s)	127, 607
MboII	GAAGA	7 cut(s)	308, 427, 731, 746, 791, 796, 799
MfeI	CAATTG	1 cut(s)	276
MflI	RGATCY	1 cut(s)	127
MlsI	TGGCCA	2 cut(s)	70, 539
MluCI	AATT	6 cut(s)	75, 276, 487, 555, 619, 687
MluNI	TGGCCA	2 cut(s)	70, 539
MmeI	TCCRAC	1 cut(s)	574
MnlI	CCTC	8 cut(s)	19, 61, 260, 302, 516, 592, 597, 618
Mox20I	TGGCCA	2 cut(s)	70, 539
MscI	TGGCCA	2 cut(s)	70, 539
MseI	TTAA	2 cut(s)	156, 510
Msp20I	TGGCCA	2 cut(s)	70, 539
MspA1I	CMGCKG	1 cut(s)	668
MspR9I	CCNGG	1 cut(s)	605
MunI	CAATTG	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	605
MwoI	GCNNNNNNNGC	1 cut(s)	443
NdeI	CATATG	2 cut(s)	240, 674
NdeII	GATC	2 cut(s)	127, 607
NlaIII	CATG	5 cut(s)	69, 115, 331, 424, 697
NlaIV	GGNNCC	3 cut(s)	213, 403, 480
NmuCI	GTSAC	2 cut(s)	44, 823
NspI	RCATGY	1 cut(s)	424
PagI	TCATGA	1 cut(s)	111
PciI	ACATGT	1 cut(s)	420
PfeI	GAWTC	3 cut(s)	94, 658, 806
PfoI	TCCNGGA	1 cut(s)	603
PkrI	GCNGC	3 cut(s)	667, 670, 814
PpuMI	RGGWCCY	1 cut(s)	479
PscI	ACATGT	1 cut(s)	420
PsiI	TTATAA	1 cut(s)	228
Psp5II	RGGWCCY	1 cut(s)	479
Psp6I	CCWGG	1 cut(s)	603
PspGI	CCWGG	1 cut(s)	603
PspN4I	GGNNCC	3 cut(s)	213, 403, 480
PspPI	GGNCC	3 cut(s)	21, 212, 479
PspPPI	RGGWCCY	1 cut(s)	479
PstI	CTGCAG	1 cut(s)	667
PsuI	RGATCY	1 cut(s)	127
RsaI	GTAC	2 cut(s)	189, 200
RsaNI	GTAC	2 cut(s)	188, 199
SaqAI	TTAA	2 cut(s)	156, 510
SatI	GCNGC	3 cut(s)	666, 669, 813
Sau3AI	GATC	2 cut(s)	127, 607
Sau96I	GGNCC	3 cut(s)	21, 212, 479
ScrFI	CCNGG	1 cut(s)	605
SfcI	CTRYAG	1 cut(s)	663
SinI	GGWCC	2 cut(s)	21, 479
Sse9I	AATT	6 cut(s)	75, 276, 487, 555, 619, 687
SsiI	CCGC	2 cut(s)	285, 668
SspI	AATATT	2 cut(s)	291, 390
SspMI	CTAG	4 cut(s)	302, 434, 516, 844
StyD4I	CCNGG	1 cut(s)	603
TaaI	ACNGT	4 cut(s)	11, 550, 793, 838
TaqI	TCGA	1 cut(s)	138
TaqII	GACCGA	1 cut(s)	38
TasI	AATT	6 cut(s)	75, 276, 487, 555, 619, 687
TatI	WGTACW	1 cut(s)	187
TauI	GCSGC	1 cut(s)	671
TfiI	GAWTC	3 cut(s)	94, 658, 806
Tru1I	TTAA	2 cut(s)	156, 510
Tru9I	TTAA	2 cut(s)	156, 510
TscAI	CASTG	1 cut(s)	798
TseFI	GTSAC	2 cut(s)	44, 823
TseI	GCWGC	2 cut(s)	665, 812
Tsp45I	GTSAC	2 cut(s)	44, 823
TspDTI	ATGAA	6 cut(s)	100, 128, 137, 316, 682, 747
TspGWI	ACGGA	1 cut(s)	640
TspRI	CASTG	1 cut(s)	798
VpaK11BI	GGWCC	2 cut(s)	21, 479
XapI	RAATTY	1 cut(s)	487
XceI	RCATGY	1 cut(s)	424
XspI	CTAG	4 cut(s)	302, 434, 516, 844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.