Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001054

Physical Location & Seq

Genomic Coordinates Forward (+)

71298337 .. 71299635

Gene Structure 1299 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021042

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGCTGGTTGGTGTTGGTGAGGCTTCATTTATTAGTCTCGCTGCCCCTTTCGTCGATGATAATGCCCCATCTCCTCAGAAAACTGCATGGCTTTCGATATTCTACATGTGCATACCATCTGGATATGCACTTGGTTATGTTTATGGTGGCTTGGTGGGCACTAGGCTAAGTTGGCGTGCTGCATTTTGGGGGGAGGCAATTCTGATGCTTCCCTTTGTGATTCTCGGGTTTGTTGTCAAGCCTTTGCAGATGAGAGGTTTTAAGCATGATGAATCAAAAGTTGCTGTGTCACAAGTTCAAGGTTCGGGTGCTTCCGAGATTAAAGTTGCAAGGAAAATAAAGAAGCATCTTTCGAGGTTTATGAAAGATATGAAGGAGCTTTTGGTCGATAAGGTGTTACAATTGTGTGCGGAGTACTTGGCACAGTTGCAGGAGGCTTTGTTCTGGATTATATGTCTTAACACTATCTCCAATGCTTTCAAGCTTCTTGCAACCACAACGTTTATTGGGGCTATATTATGCTTTGGTGCCTTTTGCTTGAAGAACACGTACGGTTTCCTAGCTCTTTTTGCAGTTGGACAACTACTTGTCTTTGCAATTCAGGGTCCCGTAAATTATGTTTGTCTGCATTGTGTGAAACCTAGTTTAAGGCCACTGTCTATGGCCATTTCTACTGTTGCAATTCACATCTTTGGAGATGTGCCTTCCTCGCCTCTCGTCGGAGTTCTCCAGGATCACATCAAGAACTGGAGGTCGACTGCTCTTATTCTAACATCTATTTTTGTTCCAGCGGCTGCCATATGGTTTATAGGAATTTTTCTGCACAGCGTCGATAGGTACAGCGAAGAAAGTGAGAACCAGATATCCACAACTCAGCTTCTGATTAAGTCTCAACCTGGAGAAGTTGTCAACCCTAATCAGTGCAAAGCTATACATGATGAAGGCATGCCAATCTACTCGAATCCATTTATTAAGGGCAAGTTGTATGTCCAGTTCACTGTTAAGTACCCAAATTCCTTGAACCCAGAACTGTGCAAGGCACTGGAGGCTGTGCTGCCTTGCGGGTCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 OATP

Protein Analysis

358

Amino Acids

39.26

Weight (kDa)

8.6

Isoelectric Point (pI)

33.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	1 - 273	7.6e-13	Major Facilitator Superfamily
OATP	PF03137	1 - 136	1e-05	Organic Anion Transporter Polypeptide (OATP) family
OATP	PF03137	177 - 246	3.4e-06	Organic Anion Transporter Polypeptide (OATP) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64500
fragaria_vesca	FvH4_2g10930 FvH4_2g10950 FvH4_2g10950 FvH4_2g10950 FvH4_6g42030
malus_domestica	MD05G1050900.v1.1 MD10G1058300.v1.1 MD12G1201800.v1.1
prunus_persica	Prupe.8G077700_v2.0.a1
pyrus_communis	pycom05g04300 pycom10g04500 pycom12g18820
rosa_chinensis	RchiOBHm_Chr2g0157961 RchiOBHm_Chr6g0269131 RchiOBHm_Chr6g0269161
rosa_laevigata	RLG00000009401 RLG00000013876 RLG00000013877 RLG00000013878 RLG00000013882 RLG00000021038 RLG00000021042
rosa_multiflora	Rmu_sc0000419.1_g000007 Rmu_sc0002120.1_g000003 Rmu_sc0004362.1_g000010 Rmu_ssc0000381.1_g000027
rosa_roxburghii	Rroxscaffold_1G00004920 Rroxscaffold_2G00091820 Rroxscaffold_3G00252830 Rroxscaffold_6G00415270 Rroxscaffold_7G00183520 Rroxscaffold_7G00199000 Rroxscaffold_7G00199020 Rroxscaffold_7G00199180
rosa_rugosa	Rorug02G0464700 Rorug02G0529300 Rorug06G0044900 Rorug06G0044900 Rorug06G0044900 Rorug06G0045000 Rorug06G0045100
rosa_samantha	Rh2AG530300 Rh2BG545000 Rh2CG514700 Rh2DG553200 Rh6AG165700 Rh6BG171100 Rh6BG171300 Rh6CG164700 Rh6CG165000 Rh6DG079900 Rh6DG156200 Rh6DG156600 Rh7AG468700 Rh7BG367400
rosa_wichuraiana	Rw2G043880 Rw6G014240 Rw6G014290 Rw6G014310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	527
AccI	GTMKAC	1 cut(s)	755
AciI	CCGC	3 cut(s)	410, 791, 1062
AclI	AACGTT	1 cut(s)	500
AclWI	GGATC	1 cut(s)	741
AcoI	YGGCCR	1 cut(s)	663
AcsI	RAATTY	2 cut(s)	813, 1012
AfaI	GTAC	4 cut(s)	416, 551, 839, 1007
AfiI	CCNNNNNNNGG	1 cut(s)	719
AflIII	ACRYGT	2 cut(s)	105, 546
AgsI	TTSAA	4 cut(s)	299, 481, 541, 1021
AjnI	CCWGG	2 cut(s)	729, 895
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AloI	GAACNNNNNNTCC	4 cut(s)	425, 457, 848, 880
AluBI	AGCT	5 cut(s)	379, 484, 563, 877, 929
AluI	AGCT	5 cut(s)	379, 484, 563, 877, 929
Alw26I	GTCTC	2 cut(s)	41, 894
AlwI	GGATC	1 cut(s)	741
AlwNI	CAGNNNCTG	2 cut(s)	794, 880
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	2 cut(s)	650, 663
ApeKI	GCWGC	4 cut(s)	41, 179, 794, 1054
ApoI	RAATTY	2 cut(s)	813, 1012
AspS9I	GGNCC	1 cut(s)	605
AsuHPI	GGTGA	1 cut(s)	29
AvaI	CYCGRG	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	605
BaeGI	GKGCMC	1 cut(s)	161
BalI	TGGCCA	1 cut(s)	665
BanI	GGYRCC	1 cut(s)	527
BarI	GAAGNNNNNNTAC	2 cut(s)	533, 565
BbvI	GCAGC	4 cut(s)	28, 166, 781, 1041
BccI	CCATC	2 cut(s)	76, 124
BcgI	CGANNNNNNTGC	4 cut(s)	44, 75, 78, 109
BciT130I	CCWGG	2 cut(s)	731, 897
BcoDI	GTCTC	2 cut(s)	41, 894
BfaI	CTAG	4 cut(s)	162, 560, 642, 1072
BisI	GCNGC	5 cut(s)	42, 180, 792, 795, 1055
BlsI	GCNGC	5 cut(s)	43, 181, 793, 796, 1056
BmcAI	AGTACT	1 cut(s)	416
Bme1390I	CCNGG	2 cut(s)	731, 897
Bme18I	GGWCC	1 cut(s)	605
BmeT110I	CYCGRG	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	605
BmiI	GGNNCC	3 cut(s)	529, 606, 607
BmrFI	CCNGG	2 cut(s)	731, 897
BmsI	GCATC	2 cut(s)	195, 355
BpmI	CTGGAG	4 cut(s)	713, 769, 918, 1064
BsaAI	YACGTR	1 cut(s)	549
BsaXI	ACNNNNNCTCC	6 cut(s)	425, 452, 455, 482, 891, 921
Bsc4I	CCNNNNNNNGG	1 cut(s)	719
Bse1I	ACTGG	3 cut(s)	752, 991, 1047
BseBI	CCWGG	2 cut(s)	731, 897
BseLI	CCNNNNNNNGG	1 cut(s)	719
BseMII	CTCAG	2 cut(s)	89, 887
BseNI	ACTGG	3 cut(s)	752, 991, 1047
BseRI	GAGGAG	1 cut(s)	63
BseSI	GKGCMC	1 cut(s)	161
BseXI	GCAGC	4 cut(s)	28, 166, 781, 1041
BsgI	GTGCAG	1 cut(s)	806
BshFI	GGCC	2 cut(s)	652, 665
BshNI	GGYRCC	1 cut(s)	527
BsiHKCI	CYCGRG	1 cut(s)	224
BsiWI	CGTACG	1 cut(s)	549
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	1 cut(s)	719
BsmAI	GTCTC	2 cut(s)	41, 894
BsmFI	GGGAC	1 cut(s)	591
BsnI	GGCC	2 cut(s)	652, 665
BsoBI	CYCGRG	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	1 cut(s)	733
BspACI	CCGC	3 cut(s)	410, 791, 1062
BspANI	GGCC	2 cut(s)	652, 665
BspCNI	CTCAG	2 cut(s)	88, 886
BspLI	GGNNCC	3 cut(s)	529, 606, 607
BspPI	GGATC	1 cut(s)	741
BspT107I	GGYRCC	1 cut(s)	527
BsrI	ACTGG	3 cut(s)	752, 991, 1047
BssMI	GATC	1 cut(s)	733
Bst2UI	CCWGG	2 cut(s)	731, 897
Bst4CI	ACNGT	6 cut(s)	426, 554, 657, 676, 1000, 1032
BstBAI	YACGTR	1 cut(s)	549
BstC8I	GCNNGC	2 cut(s)	177, 947
BstDEI	CTNAG	3 cut(s)	75, 167, 873
BstKTI	GATC	1 cut(s)	736
BstMAI	GTCTC	2 cut(s)	41, 894
BstMBI	GATC	1 cut(s)	733
BstMWI	GCNNNNNNNGC	5 cut(s)	156, 172, 569, 709, 1046
BstNI	CCWGG	2 cut(s)	731, 897
BstNSI	RCATGY	2 cut(s)	109, 949
BstSCI	CCNGG	2 cut(s)	729, 895
BstSLI	GKGCMC	1 cut(s)	161
BstV1I	GCAGC	4 cut(s)	28, 166, 781, 1041
BsuRI	GGCC	2 cut(s)	652, 665
BtsIMutI	CAGTG	4 cut(s)	653, 926, 996, 1040
Cac8I	GCNNGC	2 cut(s)	177, 947
CaiI	CAGNNNCTG	2 cut(s)	794, 880
Cfr13I	GGNCC	1 cut(s)	605
CseI	GACGC	1 cut(s)	817
Csp6I	GTAC	4 cut(s)	415, 550, 838, 1006
CviAII	CATG	5 cut(s)	87, 106, 266, 935, 946
CviQI	GTAC	4 cut(s)	415, 550, 838, 1006
DdeI	CTNAG	3 cut(s)	75, 167, 873
DpnI	GATC	1 cut(s)	735
DpnII	GATC	1 cut(s)	733
EaeI	YGGCCR	1 cut(s)	663
Eco32I	GATATC	1 cut(s)	864
Eco47I	GGWCC	1 cut(s)	605
Eco88I	CYCGRG	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	605
EcoRII	CCWGG	2 cut(s)	729, 895
EcoRV	GATATC	1 cut(s)	864
FaeI	CATG	5 cut(s)	90, 109, 269, 938, 949
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	5 cut(s)	86, 105, 265, 934, 945
FauI	CCCGC	1 cut(s)	1055
FauNDI	CATATG	1 cut(s)	800
FblI	GTMKAC	1 cut(s)	755
Fnu4HI	GCNGC	5 cut(s)	42, 180, 792, 795, 1055
Fsp4HI	GCNGC	5 cut(s)	42, 180, 792, 795, 1055
FspBI	CTAG	4 cut(s)	162, 560, 642, 1072
GluI	GCNGC	5 cut(s)	42, 180, 792, 795, 1055
GsuI	CTGGAG	4 cut(s)	713, 769, 918, 1064
HaeIII	GGCC	2 cut(s)	652, 665
HgaI	GACGC	1 cut(s)	817
Hin1II	CATG	5 cut(s)	90, 109, 269, 938, 949
HincII	GTYRAC	2 cut(s)	756, 910
HindII	GTYRAC	2 cut(s)	756, 910
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	3 cut(s)	220, 272, 961
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	3 cut(s)	756, 910, 996
Hpy188I	TCNGA	6 cut(s)	78, 204, 316, 722, 882, 1069
Hpy188III	TCNNGA	3 cut(s)	120, 445, 742
Hpy8I	GTNNAC	3 cut(s)	756, 910, 996
Hpy99I	CGWCG	3 cut(s)	56, 722, 833
HpyAV	CCTTC	3 cut(s)	367, 714, 935
HpyCH4III	ACNGT	6 cut(s)	426, 554, 657, 676, 1000, 1032
HpyCH4IV	ACGT	2 cut(s)	500, 548
HpyF10VI	GCNNNNNNNGC	5 cut(s)	156, 172, 569, 709, 1046
HpyF3I	CTNAG	3 cut(s)	75, 167, 873
HpySE526I	ACGT	2 cut(s)	500, 548
Hsp92II	CATG	5 cut(s)	90, 109, 269, 938, 949
KflI	GGGWCCC	1 cut(s)	605
Kzo9I	GATC	1 cut(s)	733
LmnI	GCTCC	1 cut(s)	376
Lsp1109I	GCAGC	4 cut(s)	28, 166, 781, 1041
LweI	GCATC	2 cut(s)	195, 355
MaeI	CTAG	4 cut(s)	162, 560, 642, 1072
MaeII	ACGT	2 cut(s)	500, 548
MaeIII	GTNAC	2 cut(s)	288, 396
MalI	GATC	1 cut(s)	735
MboI	GATC	1 cut(s)	733
MboII	GAAGA	2 cut(s)	553, 857
MfeI	CAATTG	1 cut(s)	401
MhlI	GDGCHC	1 cut(s)	161
MlsI	TGGCCA	1 cut(s)	665
MluCI	AATT	7 cut(s)	198, 401, 597, 613, 681, 813, 1012
MluNI	TGGCCA	1 cut(s)	665
MmeI	TCCRAC	2 cut(s)	556, 700
Mox20I	TGGCCA	1 cut(s)	665
MscI	TGGCCA	1 cut(s)	665
MseI	TTAA	7 cut(s)	261, 321, 459, 647, 885, 972, 1002
Msp20I	TGGCCA	1 cut(s)	665
MspA1I	CMGCKG	1 cut(s)	791
MspR9I	CCNGG	2 cut(s)	731, 897
MunI	CAATTG	1 cut(s)	401
MvaI	CCWGG	2 cut(s)	731, 897
MwoI	GCNNNNNNNGC	5 cut(s)	156, 172, 569, 709, 1046
NdeI	CATATG	1 cut(s)	800
NdeII	GATC	1 cut(s)	733
NlaIII	CATG	5 cut(s)	90, 109, 269, 938, 949
NlaIV	GGNNCC	3 cut(s)	529, 606, 607
NmuCI	GTSAC	1 cut(s)	288
NspI	RCATGY	2 cut(s)	109, 949
PaeI	GCATGC	1 cut(s)	949
PciI	ACATGT	1 cut(s)	105
PfeI	GAWTC	3 cut(s)	220, 272, 961
Pfl23II	CGTACG	1 cut(s)	549
PfoI	TCCNGGA	1 cut(s)	729
PkrI	GCNGC	5 cut(s)	43, 181, 793, 796, 1056
Ppu21I	YACGTR	1 cut(s)	549
PpuMI	RGGWCCY	1 cut(s)	605
PscI	ACATGT	1 cut(s)	105
Psp1406I	AACGTT	1 cut(s)	500
Psp5II	RGGWCCY	1 cut(s)	605
Psp6I	CCWGG	2 cut(s)	729, 895
PspGI	CCWGG	2 cut(s)	729, 895
PspLI	CGTACG	1 cut(s)	549
PspN4I	GGNNCC	3 cut(s)	529, 606, 607
PspPI	GGNCC	1 cut(s)	605
PspPPI	RGGWCCY	1 cut(s)	605
PsrI	GAACNNNNNNTAC	2 cut(s)	977, 1009
PstNI	CAGNNNCTG	2 cut(s)	794, 880
RsaI	GTAC	4 cut(s)	416, 551, 839, 1007
RsaNI	GTAC	4 cut(s)	415, 550, 838, 1006
SalI	GTCGAC	1 cut(s)	754
SaqAI	TTAA	7 cut(s)	261, 321, 459, 647, 885, 972, 1002
SatI	GCNGC	5 cut(s)	42, 180, 792, 795, 1055
Sau3AI	GATC	1 cut(s)	733
Sau96I	GGNCC	1 cut(s)	605
ScaI	AGTACT	1 cut(s)	416
ScrFI	CCNGG	2 cut(s)	731, 897
SduI	GDGCHC	1 cut(s)	161
SfaNI	GCATC	2 cut(s)	195, 355
SinI	GGWCC	1 cut(s)	605
SphI	GCATGC	1 cut(s)	949
Sse9I	AATT	7 cut(s)	198, 401, 597, 613, 681, 813, 1012
SsiI	CCGC	3 cut(s)	410, 791, 1062
SspMI	CTAG	4 cut(s)	162, 560, 642, 1072
StyD4I	CCNGG	2 cut(s)	729, 895
TaaI	ACNGT	6 cut(s)	426, 554, 657, 676, 1000, 1032
TaiI	ACGT	2 cut(s)	503, 551
TaqI	TCGA	7 cut(s)	54, 95, 353, 387, 755, 831, 959
TasI	AATT	7 cut(s)	198, 401, 597, 613, 681, 813, 1012
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	1 cut(s)	794
TfiI	GAWTC	3 cut(s)	220, 272, 961
Tru1I	TTAA	7 cut(s)	261, 321, 459, 647, 885, 972, 1002
Tru9I	TTAA	7 cut(s)	261, 321, 459, 647, 885, 972, 1002
TscAI	CASTG	4 cut(s)	660, 926, 1003, 1047
TseFI	GTSAC	1 cut(s)	288
TseI	GCWGC	4 cut(s)	41, 179, 794, 1054
Tsp45I	GTSAC	1 cut(s)	288
TspDTI	ATGAA	5 cut(s)	15, 285, 377, 386, 954
TspRI	CASTG	4 cut(s)	660, 926, 1003, 1047
VpaK11BI	GGWCC	1 cut(s)	605
XapI	RAATTY	2 cut(s)	813, 1012
XceI	RCATGY	2 cut(s)	109, 949
XmiI	GTMKAC	1 cut(s)	755
XspI	CTAG	4 cut(s)	162, 560, 642, 1072
ZrmI	AGTACT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.