Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001054

Physical Location & Seq

Genomic Coordinates Reverse (-)

26412187 .. 26419548

Gene Structure 7362 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G014290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCCAATCCTCAACATGAAGAAGAAGAATCAAAGTCAGTCGTCTCCATTGCCTCTACCTCATTAAGGAAATCAAGGAAATCAAAGCGTCCTTCCTGGTTCACCCCCAAGAGGTTACTTCTCATATTCTGTGTGATCAACTTGGTAAATTATGTGGACCGAGGAGCAATATCAAGCAACGGCGTGAATGGGAACCTTGCAATTTGCAGGAATGGTAAATGCAAACCTGCTACCGGCATACAGGGGCATTTTTTACTGAACAACTTTTCAGTTGGATGTCTATCGTCAGCTTTTATGGTTGGACTTCTGGTGGCTTCTCCAATTTTTGCAGCACTAGCAAAGAGTGTAAATCCATTTAAGCTCATTGGAGTTGGATTGTCAATTTGGACTTTTGCTGTAACTGGTTGTGGTTTTTCATTCAACTTCTTGTCTATCTTAATCTGCCGCATGCTAGTTGGTGTTGGTGAGGCTTCGTTTATTAGTCTTGCAGCTCCGTTCATTGATGATAATGCCCCAGCTGCTCAGAAAACTCTATGGCTTTCAACATTCTACATGTGCATACCATCTGGATATGCACTTGGTTATGTTTACGGAGGCTTGGTGGGAACTACTCTCAGTTGGCGTGCTGCATTTTGGGGGGAGGGAATTCTGATGCTTCCATTTGCTATTCTAGGATTTGTTATGAAGCCTTTGCGGATGAAAGGTTTTAAGCATGATGAATCAAATGAAGCATTGACTGTGCAGGAGACGGCTGTCTCAGAAGTTCAAGGTGCTTTGAACCCGAAGGATAGGGCAGTTTCAATGAAGGAAGATGTAACAAATTCTACCATACATAAACCTTCCAAGCCAAAAATTGCAACAAAAATAAAGAATCATCTTTCAAGGTTCATGAAAGATATGAAGGATCTTTGGTCGATAAGGTTTATGTTGTTAATGTTCTTGGTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 OATP

Protein Analysis

316

Amino Acids

34.65

Weight (kDa)

9.64

Isoelectric Point (pI)

26.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	79 - 313	7.7e-25	Major Facilitator Superfamily
Sugar_tr	PF00083	88 - 247	4.5e-07	Sugar (and other) transporter
OATP	PF03137	144 - 201	2.5e-06	Organic Anion Transporter Polypeptide (OATP) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64500
fragaria_vesca	FvH4_2g10930 FvH4_2g10950 FvH4_2g10950 FvH4_2g10950 FvH4_6g42030
malus_domestica	MD05G1050900.v1.1 MD10G1058300.v1.1 MD12G1201800.v1.1
prunus_persica	Prupe.8G077700_v2.0.a1
pyrus_communis	pycom05g04300 pycom10g04500 pycom12g18820
rosa_chinensis	RchiOBHm_Chr2g0157961 RchiOBHm_Chr6g0269131 RchiOBHm_Chr6g0269161
rosa_laevigata	RLG00000009401 RLG00000013876 RLG00000013877 RLG00000013878 RLG00000013882 RLG00000021038 RLG00000021042
rosa_multiflora	Rmu_sc0000419.1_g000007 Rmu_sc0002120.1_g000003 Rmu_sc0004362.1_g000010 Rmu_ssc0000381.1_g000027
rosa_roxburghii	Rroxscaffold_1G00004920 Rroxscaffold_2G00091820 Rroxscaffold_3G00252830 Rroxscaffold_6G00415270 Rroxscaffold_7G00183520 Rroxscaffold_7G00199000 Rroxscaffold_7G00199020 Rroxscaffold_7G00199180
rosa_rugosa	Rorug02G0464700 Rorug02G0529300 Rorug06G0044900 Rorug06G0044900 Rorug06G0044900 Rorug06G0045000 Rorug06G0045100
rosa_samantha	Rh2AG530300 Rh2BG545000 Rh2CG514700 Rh2DG553200 Rh6AG165700 Rh6BG171100 Rh6BG171300 Rh6CG164700 Rh6CG165000 Rh6DG079900 Rh6DG156200 Rh6DG156600 Rh7AG468700 Rh7BG367400
rosa_wichuraiana	Rw2G043880 Rw6G014240 Rw6G014290 Rw6G014310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	235
AciI	CCGC	2 cut(s)	445, 694
AclWI	GGATC	1 cut(s)	912
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	645, 820
AfiI	CCNNNNNNNGG	3 cut(s)	66, 111, 233
AflIII	ACRYGT	1 cut(s)	552
AgsI	TTSAA	6 cut(s)	421, 543, 767, 778, 801, 882
AjnI	CCWGG	1 cut(s)	95
AluBI	AGCT	4 cut(s)	290, 361, 491, 518
AluI	AGCT	4 cut(s)	290, 361, 491, 518
Alw26I	GTCTC	3 cut(s)	49, 740, 760
AlwI	GGATC	1 cut(s)	912
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	329, 488, 518, 626
ApoI	RAATTY	2 cut(s)	645, 820
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	2 cut(s)	94, 476
AvaII	GGWCC	1 cut(s)	157
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	4 cut(s)	341, 500, 505, 613
BccI	CCATC	1 cut(s)	571
BceAI	ACGGC	2 cut(s)	196, 765
BciT130I	CCWGG	1 cut(s)	97
BclI	TGATCA	1 cut(s)	135
BcoDI	GTCTC	3 cut(s)	49, 740, 760
BfaI	CTAG	3 cut(s)	335, 452, 671
BfuAI	ACCTGC	1 cut(s)	235
BisI	GCNGC	5 cut(s)	330, 445, 489, 519, 627
BlsI	GCNGC	5 cut(s)	331, 446, 490, 520, 628
Bme1390I	CCNGG	1 cut(s)	97
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	194
BmrFI	CCNGG	1 cut(s)	97
BmsI	GCATC	1 cut(s)	642
BoxI	GACNNNNGTC	1 cut(s)	752
BsaBI	GATNNNNATC	1 cut(s)	280
BsaJI	CCNNGG	1 cut(s)	160
BsaXI	ACNNNNNCTCC	2 cut(s)	585, 615
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 111, 233
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	1 cut(s)	406
Bse3DI	GCAATG	1 cut(s)	48
Bse8I	GATNNNNATC	1 cut(s)	280
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	2 cut(s)	281, 702
BseJI	GATNNNNATC	1 cut(s)	280
BseLI	CCNNNNNNNGG	3 cut(s)	66, 111, 233
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	3 cut(s)	536, 628, 771
BseNI	ACTGG	1 cut(s)	406
BseRI	GAGGAG	1 cut(s)	177
BseXI	GCAGC	4 cut(s)	341, 500, 505, 613
BseYI	CCCAGC	1 cut(s)	514
BsgI	GTGCAG	1 cut(s)	761
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	234
BslI	CCNNNNNNNGG	3 cut(s)	66, 111, 233
BsmAI	GTCTC	3 cut(s)	49, 740, 760
BsmBI	CGTCTC	2 cut(s)	49, 740
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	135, 904
BspACI	CCGC	2 cut(s)	445, 694
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	535, 627, 770
BspHI	TCATGA	1 cut(s)	888
BspLI	GGNNCC	1 cut(s)	194
BspMI	ACCTGC	1 cut(s)	235
BspPI	GGATC	1 cut(s)	912
BsrDI	GCAATG	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	406
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	2 cut(s)	135, 904
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	1 cut(s)	739
BstC8I	GCNNGC	2 cut(s)	449, 624
BstDEI	CTNAG	3 cut(s)	522, 614, 757
BstENI	CCTNNNNNAGG	1 cut(s)	64
BstF5I	GGATG	2 cut(s)	281, 702
BstKTI	GATC	2 cut(s)	138, 907
BstMAI	GTCTC	3 cut(s)	49, 740, 760
BstMBI	GATC	2 cut(s)	135, 904
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 518
BstNI	CCWGG	1 cut(s)	97
BstNSI	RCATGY	2 cut(s)	451, 556
BstPAI	GACNNNNGTC	1 cut(s)	752
BstSCI	CCNGG	1 cut(s)	95
BstV1I	GCAGC	4 cut(s)	341, 500, 505, 613
BstX2I	RGATCY	1 cut(s)	904
BstYI	RGATCY	1 cut(s)	904
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	281, 702
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	2 cut(s)	449, 624
CciI	TCATGA	1 cut(s)	888
Cfr10I	RCCGGY	1 cut(s)	233
Cfr13I	GGNCC	1 cut(s)	157
CseI	GACGC	1 cut(s)	77
CviAII	CATG	5 cut(s)	17, 448, 553, 713, 889
DdeI	CTNAG	3 cut(s)	522, 614, 757
DpnI	GATC	2 cut(s)	137, 906
DpnII	GATC	2 cut(s)	135, 904
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	157
EcoNI	CCTNNNNNAGG	1 cut(s)	64
EcoRI	GAATTC	1 cut(s)	645
EcoRII	CCWGG	1 cut(s)	95
Esp3I	CGTCTC	2 cut(s)	49, 740
FaeI	CATG	5 cut(s)	20, 451, 556, 716, 892
FatI	CATG	5 cut(s)	16, 447, 552, 712, 888
FbaI	TGATCA	1 cut(s)	135
Fnu4HI	GCNGC	5 cut(s)	330, 445, 489, 519, 627
FokI	GGATG	2 cut(s)	288, 709
Fsp4HI	GCNGC	5 cut(s)	330, 445, 489, 519, 627
FspBI	CTAG	3 cut(s)	335, 452, 671
GluI	GCNGC	5 cut(s)	330, 445, 489, 519, 627
GsaI	CCCAGC	1 cut(s)	518
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	234
HgaI	GACGC	1 cut(s)	77
Hin1II	CATG	5 cut(s)	20, 451, 556, 716, 892
HinfI	GANTC	3 cut(s)	29, 719, 871
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	2 cut(s)	94, 476
Hpy166II	GTNNAC	3 cut(s)	102, 157, 589
Hpy188I	TCNGA	3 cut(s)	525, 651, 760
Hpy188III	TCNNGA	2 cut(s)	567, 889
Hpy8I	GTNNAC	3 cut(s)	102, 157, 589
HpyAV	CCTTC	5 cut(s)	102, 778, 799, 849, 895
HpyCH4III	ACNGT	1 cut(s)	739
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 518
HpyF3I	CTNAG	3 cut(s)	522, 614, 757
Hsp92II	CATG	5 cut(s)	20, 451, 556, 716, 892
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	2 cut(s)	135, 904
LmnI	GCTCC	2 cut(s)	164, 496
Lsp1109I	GCAGC	4 cut(s)	341, 500, 505, 613
LweI	GCATC	1 cut(s)	642
MaeI	CTAG	3 cut(s)	335, 452, 671
MaeIII	GTNAC	3 cut(s)	114, 397, 814
MalI	GATC	2 cut(s)	137, 906
MboI	GATC	2 cut(s)	135, 904
MboII	GAAGA	4 cut(s)	32, 35, 38, 821
MflI	RGATCY	1 cut(s)	904
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	148, 201, 321, 381, 645, 820, 852
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	3 cut(s)	253, 280, 352
MnlI	CCTC	8 cut(s)	21, 64, 70, 105, 155, 460, 587, 634
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	65, 357, 437, 708, 932
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	2 cut(s)	335, 518
NdeII	GATC	2 cut(s)	135, 904
NlaIII	CATG	5 cut(s)	20, 451, 556, 716, 892
NlaIV	GGNNCC	1 cut(s)	194
NspI	RCATGY	2 cut(s)	451, 556
PaeI	GCATGC	1 cut(s)	451
PagI	TCATGA	1 cut(s)	888
PciI	ACATGT	1 cut(s)	552
PfeI	GAWTC	3 cut(s)	29, 719, 871
PkrI	GCNGC	5 cut(s)	331, 446, 490, 520, 628
PscI	ACATGT	1 cut(s)	552
PshAI	GACNNNNGTC	1 cut(s)	752
Psp6I	CCWGG	1 cut(s)	95
PspFI	CCCAGC	1 cut(s)	514
PspGI	CCWGG	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	194
PspPI	GGNCC	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	904
PvuII	CAGCTG	1 cut(s)	518
SaqAI	TTAA	5 cut(s)	65, 357, 437, 708, 932
SatI	GCNGC	5 cut(s)	330, 445, 489, 519, 627
Sau3AI	GATC	2 cut(s)	135, 904
Sau96I	GGNCC	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	97
SfaNI	GCATC	1 cut(s)	642
SinI	GGWCC	1 cut(s)	157
SphI	GCATGC	1 cut(s)	451
Sse9I	AATT	7 cut(s)	148, 201, 321, 381, 645, 820, 852
SsiI	CCGC	2 cut(s)	445, 694
SspMI	CTAG	3 cut(s)	335, 452, 671
StyD4I	CCNGG	1 cut(s)	95
TaaI	ACNGT	1 cut(s)	739
TaqI	TCGA	1 cut(s)	914
TaqII	GACCGA	1 cut(s)	174
TasI	AATT	7 cut(s)	148, 201, 321, 381, 645, 820, 852
TauI	GCSGC	1 cut(s)	447
TfiI	GAWTC	3 cut(s)	29, 719, 871
Tru1I	TTAA	5 cut(s)	65, 357, 437, 708, 932
Tru9I	TTAA	5 cut(s)	65, 357, 437, 708, 932
TseI	GCWGC	4 cut(s)	329, 488, 518, 626
TspGWI	ACGGA	2 cut(s)	483, 606
VpaK11BI	GGWCC	1 cut(s)	157
XagI	CCTNNNNNAGG	1 cut(s)	64
XapI	RAATTY	2 cut(s)	645, 820
XceI	RCATGY	2 cut(s)	451, 556
XspI	CTAG	3 cut(s)	335, 452, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.