Rmu_ssc0000381.1_g000027

sphingolipid transporter spinster homolog

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000381.1
Physical Location & Seq
Forward (+)
118682 .. 128901
10220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000381.1_g000027.1.cds

Sequence Viewer

Length: 1545 bp
atgattgtttcttcaatcgcacctcttcagccttcatggttttcgcccaagaagttacttgttgtattttgtgtgattaacttgataaattatgtggaccgaggagcaattgcaagcaatggtgtgaatgggagtctgggaacttgtgcagagggtggtacgtgcacatctggcaccggcatacagggggattttgacttgagcaattttgaagatggatgcctatcatctgcttttatggttggacttctggtggcttctccgatttttgcttcattagcaaagagtgtgaatccatttaggctcattggagttggattgtcagtttggacttttgctgtagttggttgtggtctttcattcaacttctggtccattaccatctgccgcatgctagttggtgttggcgaggcttcatttattagtcttgcagctccgttcattgatgataatgccccagctgctcagaaaactgtgtggcttgcaatattctacatgtgcataccatctggatatgcacttggttatgtatatggtgggttggtgggaagttataccaattggcgttttgcattctggggggaggcaatcctgatgcttccgtttgctattctagggtttgtcatgaagcctttgcagcttaaaggttttatgcctgctgaatcaaaacaagtgctgacaggggtggagacgggtgtctcagaagttcaagattcaggcgtttcgaatggtaaagatggtttgtttccagtggagggagatgtcaaatattctaccatacataaacagaatgaggtgaactttgcaacaaaaataaagggtcaaatttcaaggtttacaaaagatatgaaggtgcttttgattgagaaggtttatgttgttaatgttctaggttacatagcgtacaacttcgtaattggtgcgtactcatattgggggcctaaggctggttataatatatatcatatgactgatgcagatttgatatttggaggtattacaattgtgtgtggaatattgggtaccgtagcaggaggctttcttttggatttcatgaccagcagtattcctaatgctttcaagcttctttctgcagctacgtttttggggggaatattttgcttcactgccttttgcttctcaaacatgtatgctttcctagctctatttgcagttggcgaactacttgtctttgcaactcagggtcctgtaaattacatttgtctgcactgtgttaaacctagtatgagaccactagctatggccatgtctactgtttctattcatctttttggggatgtgccttcctcacctcttgtcggagttctcgaggattgcatcaacaattggagggtgactgctcttattctaacatctatattcattccagcggctggtatatggtttataggaatttttctgcctagtgtggatagatttaatgaagaaagtgagaatcagatatccacaactgaaaggtccagcataactcctttgcttgaagggacgaagacagaaacgactggatccgctgctgaaccataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

514

Amino Acids

55.19

Weight (kDa)

5.24

Isoelectric Point (pI)

28.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 954
Acc65I GGTACC 1 cut(s) 1022
AccB1I GGYRCC 2 cut(s) 173, 1022
AccB7I CCANNNNNTGG 1 cut(s) 1394
AccI GTMKAC 1 cut(s) 1271
AciI CCGC 3 cut(s) 388, 1391, 1530
AclWI GGATC 2 cut(s) 1521, 1534
AcoI YGGCCR 1 cut(s) 1263
AcsI RAATTY 2 cut(s) 825, 1413
AcuI CTGAAG 1 cut(s) 11
AfaI GTAC 4 cut(s) 160, 905, 926, 1024
AfiI CCNNNNNNNGG 4 cut(s) 755, 947, 1319, 1394
AflIII ACRYGT 2 cut(s) 495, 1146
AgsI TTSAA 7 cut(s) 15, 212, 364, 710, 831, 1081, 1502
AluBI AGCT 7 cut(s) 434, 461, 640, 1084, 1097, 1163, 1259
AluI AGCT 7 cut(s) 434, 461, 640, 1084, 1097, 1163, 1259
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 3 cut(s) 683, 703, 1243
Alw44I GTGCAC 1 cut(s) 163
AlwI GGATC 2 cut(s) 1521, 1534
AlwNI CAGNNNCTG 1 cut(s) 1394
Ama87I CYCGRG 1 cut(s) 1328
AoxI GGCC 2 cut(s) 938, 1263
ApaLI GTGCAC 1 cut(s) 163
ApeKI GCWGC 5 cut(s) 431, 461, 637, 1094, 1532
ApoI RAATTY 2 cut(s) 825, 1413
ArsI GACNNNNNNTTYG 2 cut(s) 1173, 1205
Asp718I GGTACC 1 cut(s) 1022
AspS9I GGNCC 5 cut(s) 97, 372, 938, 1205, 1479
AsuHPI GGTGA 3 cut(s) 808, 1302, 1366
AsuII TTCGAA 1 cut(s) 725
AvaI CYCGRG 1 cut(s) 1328
AvaII GGWCC 4 cut(s) 97, 372, 1205, 1479
AxyI CCTNAGG 1 cut(s) 942
BaeGI GKGCMC 1 cut(s) 167
BalI TGGCCA 1 cut(s) 1265
BamHI GGATCC 1 cut(s) 1526
BanI GGYRCC 2 cut(s) 173, 1022
BbsI GAAGAC 1 cut(s) 1517
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 5 cut(s) 443, 448, 649, 1106, 1519
BccI CCATC 4 cut(s) 209, 389, 514, 731
BcoDI GTCTC 3 cut(s) 683, 703, 1243
BfaI CTAG 7 cut(s) 395, 614, 890, 1160, 1242, 1256, 1425
BfmI CTRYAG 2 cut(s) 339, 1092
BisI GCNGC 7 cut(s) 388, 432, 462, 638, 1095, 1392, 1533
BlsI GCNGC 7 cut(s) 389, 433, 463, 639, 1096, 1393, 1534
Bme18I GGWCC 4 cut(s) 97, 372, 1205, 1479
BmeT110I CYCGRG 1 cut(s) 1328
BmgT120I GGNCC 5 cut(s) 97, 372, 938, 1205, 1479
BmiI GGNNCC 5 cut(s) 175, 939, 1024, 1206, 1528
BmsI GCATC 4 cut(s) 209, 585, 964, 1347
BoxI GACNNNNGTC 1 cut(s) 695
BpiI GAAGAC 1 cut(s) 1517
Bpu14I TTCGAA 1 cut(s) 725
BpuEI CTTGAG 1 cut(s) 220
BsaAI YACGTR 1 cut(s) 162
BsaBI GATNNNNATC 1 cut(s) 223
BsaI GGTCTC 1 cut(s) 1243
BsaJI CCNNGG 1 cut(s) 100
Bsc4I CCNNNNNNNGG 4 cut(s) 755, 947, 1319, 1394
Bse118I RCCGGY 1 cut(s) 176
Bse1I ACTGG 2 cut(s) 749, 1528
Bse21I CCTNAGG 1 cut(s) 942
Bse3DI GCAATG 1 cut(s) 124
Bse8I GATNNNNATC 1 cut(s) 223
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 2 cut(s) 224, 1303
BseJI GATNNNNATC 1 cut(s) 223
BseLI CCNNNNNNNGG 4 cut(s) 755, 947, 1319, 1394
BseMI GCAATG 1 cut(s) 124
BseMII CTCAG 3 cut(s) 479, 714, 1214
BseNI ACTGG 2 cut(s) 749, 1528
BseRI GAGGAG 1 cut(s) 117
BseSI GKGCMC 1 cut(s) 167
BseXI GCAGC 5 cut(s) 443, 448, 649, 1106, 1519
BseYI CCCAGC 1 cut(s) 457
BsgI GTGCAG 2 cut(s) 168, 1211
BshFI GGCC 2 cut(s) 940, 1265
BshNI GGYRCC 2 cut(s) 173, 1022
BsiHKAI GWGCWC 1 cut(s) 167
BsiHKCI CYCGRG 1 cut(s) 1328
BsiSI CCGG 1 cut(s) 177
BslFI GGGAC 1 cut(s) 1519
BslI CCNNNNNNNGG 4 cut(s) 755, 947, 1319, 1394
BsmAI GTCTC 3 cut(s) 683, 703, 1243
BsmBI CGTCTC 1 cut(s) 683
BsmFI GGGAC 1 cut(s) 1519
BsmI GAATGC 1 cut(s) 572
BsnI GGCC 2 cut(s) 940, 1265
Bso31I GGTCTC 1 cut(s) 1243
BsoBI CYCGRG 1 cut(s) 1328
Bsp119I TTCGAA 1 cut(s) 725
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 1 cut(s) 1526
BspACI CCGC 3 cut(s) 388, 1391, 1530
BspANI GGCC 2 cut(s) 940, 1265
BspCNI CTCAG 3 cut(s) 478, 713, 1213
BspHI TCATGA 2 cut(s) 624, 1053
BspLI GGNNCC 5 cut(s) 175, 939, 1024, 1206, 1528
BspMAI CTGCAG 1 cut(s) 1096
BspPI GGATC 2 cut(s) 1521, 1534
BspT104I TTCGAA 1 cut(s) 725
BspT107I GGYRCC 2 cut(s) 173, 1022
BspTNI GGTCTC 1 cut(s) 1243
BsrDI GCAATG 1 cut(s) 124
BsrFI RCCGGY 1 cut(s) 176
BsrI ACTGG 2 cut(s) 749, 1528
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 1 cut(s) 1526
Bst4CI ACNGT 4 cut(s) 475, 1027, 1232, 1276
Bst6I CTCTTC 1 cut(s) 30
BstBAI YACGTR 1 cut(s) 162
BstBI TTCGAA 1 cut(s) 725
BstC8I GCNNGC 4 cut(s) 115, 392, 483, 657
BstDEI CTNAG 4 cut(s) 465, 700, 942, 1200
BstF5I GGATG 2 cut(s) 224, 1303
BstKTI GATC 1 cut(s) 1529
BstMAI GTCTC 3 cut(s) 683, 703, 1243
BstMBI GATC 1 cut(s) 1526
BstMWI GCNNNNNNNGC 6 cut(s) 171, 278, 461, 637, 1160, 1169
BstNSI RCATGY 3 cut(s) 394, 499, 1150
BstPAI GACNNNNGTC 1 cut(s) 695
BstSFI CTRYAG 2 cut(s) 339, 1092
BstSLI GKGCMC 1 cut(s) 167
BstV1I GCAGC 5 cut(s) 443, 448, 649, 1106, 1519
BstV2I GAAGAC 1 cut(s) 1517
BstX2I RGATCY 1 cut(s) 1526
BstYI RGATCY 1 cut(s) 1526
Bsu36I CCTNAGG 1 cut(s) 942
BsuRI GGCC 2 cut(s) 940, 1265
BtsCI GGATG 2 cut(s) 224, 1303
BtsI GCAGTG 1 cut(s) 1125
BtsIMutI CAGTG 3 cut(s) 756, 1125, 1228
Cac8I GCNNGC 4 cut(s) 115, 392, 483, 657
CaiI CAGNNNCTG 1 cut(s) 1394
CciI TCATGA 2 cut(s) 624, 1053
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 5 cut(s) 97, 372, 938, 1205, 1479
Csp6I GTAC 4 cut(s) 159, 904, 925, 1023
CviAII CATG 7 cut(s) 36, 391, 496, 625, 1054, 1147, 1267
CviQI GTAC 4 cut(s) 159, 904, 925, 1023
DdeI CTNAG 4 cut(s) 465, 700, 942, 1200
DpnI GATC 1 cut(s) 1528
DpnII GATC 1 cut(s) 1526
EaeI YGGCCR 1 cut(s) 1263
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco31I GGTCTC 1 cut(s) 1243
Eco32I GATATC 1 cut(s) 1464
Eco47I GGWCC 4 cut(s) 97, 372, 1205, 1479
Eco57I CTGAAG 1 cut(s) 11
Eco81I CCTNAGG 1 cut(s) 942
Eco88I CYCGRG 1 cut(s) 1328
EcoO109I RGGNCCY 2 cut(s) 938, 1205
EcoRV GATATC 1 cut(s) 1464
Esp3I CGTCTC 1 cut(s) 683
FaeI CATG 7 cut(s) 39, 394, 499, 628, 1057, 1150, 1270
FaqI GGGAC 1 cut(s) 1519
FatI CATG 7 cut(s) 35, 390, 495, 624, 1053, 1146, 1266
FauNDI CATATG 1 cut(s) 966
FblI GTMKAC 1 cut(s) 1271
Fnu4HI GCNGC 7 cut(s) 388, 432, 462, 638, 1095, 1392, 1533
FokI GGATG 2 cut(s) 231, 1310
Fsp4HI GCNGC 7 cut(s) 388, 432, 462, 638, 1095, 1392, 1533
FspBI CTAG 7 cut(s) 395, 614, 890, 1160, 1242, 1256, 1425
GluI GCNGC 7 cut(s) 388, 432, 462, 638, 1095, 1392, 1533
GsaI CCCAGC 1 cut(s) 461
HaeIII GGCC 2 cut(s) 940, 1265
HapII CCGG 1 cut(s) 177
Hin1II CATG 7 cut(s) 39, 394, 499, 628, 1057, 1150, 1270
HindIII AAGCTT 1 cut(s) 1082
HinfI GANTC 5 cut(s) 133, 292, 662, 713, 1456
HpaII CCGG 1 cut(s) 177
HphI GGTGA 3 cut(s) 808, 1302, 1366
Hpy166II GTNNAC 5 cut(s) 97, 165, 799, 837, 1272
Hpy188I TCNGA 5 cut(s) 264, 468, 703, 1322, 1461
Hpy188III TCNNGA 6 cut(s) 510, 592, 625, 710, 1054, 1328
Hpy8I GTNNAC 5 cut(s) 97, 165, 799, 837, 1272
HpyAV CCTTC 5 cut(s) 42, 844, 862, 1314, 1496
HpyCH4III ACNGT 4 cut(s) 475, 1027, 1232, 1276
HpyCH4IV ACGT 2 cut(s) 161, 1100
HpyF10VI GCNNNNNNNGC 6 cut(s) 171, 278, 461, 637, 1160, 1169
HpyF3I CTNAG 4 cut(s) 465, 700, 942, 1200
HpySE526I ACGT 2 cut(s) 161, 1100
Hsp92II CATG 7 cut(s) 39, 394, 499, 628, 1057, 1150, 1270
KpnI GGTACC 1 cut(s) 1026
Kzo9I GATC 1 cut(s) 1526
LmnI GCTCC 2 cut(s) 104, 439
Lsp1109I GCAGC 5 cut(s) 443, 448, 649, 1106, 1519
LweI GCATC 4 cut(s) 209, 585, 964, 1347
MaeI CTAG 7 cut(s) 395, 614, 890, 1160, 1242, 1256, 1425
MaeII ACGT 2 cut(s) 161, 1100
MaeIII GTNAC 3 cut(s) 54, 893, 1354
MalI GATC 1 cut(s) 1528
MboI GATC 1 cut(s) 1526
MboII GAAGA 5 cut(s) 3, 17, 224, 1457, 1522
MfeI CAATTG 4 cut(s) 108, 559, 1002, 1345
MflI RGATCY 1 cut(s) 1526
MhlI GDGCHC 1 cut(s) 167
MlsI TGGCCA 1 cut(s) 1265
MluNI TGGCCA 1 cut(s) 1265
MlyI GAGTC 1 cut(s) 142
MmeI TCCRAC 3 cut(s) 223, 295, 1300
Mox20I TGGCCA 1 cut(s) 1265
MscI TGGCCA 1 cut(s) 1265
MseI TTAA 5 cut(s) 78, 642, 882, 1236, 1440
Msp20I TGGCCA 1 cut(s) 1265
MspA1I CMGCKG 3 cut(s) 461, 1391, 1532
MspI CCGG 1 cut(s) 177
MunI CAATTG 4 cut(s) 108, 559, 1002, 1345
Mva1269I GAATGC 1 cut(s) 572
MwoI GCNNNNNNNGC 6 cut(s) 171, 278, 461, 637, 1160, 1169
NdeI CATATG 1 cut(s) 966
NdeII GATC 1 cut(s) 1526
NlaIII CATG 7 cut(s) 39, 394, 499, 628, 1057, 1150, 1270
NlaIV GGNNCC 5 cut(s) 175, 939, 1024, 1206, 1528
NmuCI GTSAC 1 cut(s) 1354
NspI RCATGY 3 cut(s) 394, 499, 1150
NspV TTCGAA 1 cut(s) 725
PaeI GCATGC 1 cut(s) 394
PaeR7I CTCGAG 1 cut(s) 1328
PagI TCATGA 2 cut(s) 624, 1053
PciI ACATGT 2 cut(s) 495, 1146
PcsI WCGNNNNNNNCGW 1 cut(s) 1326
PctI GAATGC 1 cut(s) 572
PfeI GAWTC 4 cut(s) 292, 662, 713, 1456
PflMI CCANNNNNTGG 1 cut(s) 1394
PkrI GCNGC 7 cut(s) 389, 433, 463, 639, 1096, 1393, 1534
PleI GAGTC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 141
Ppu21I YACGTR 1 cut(s) 162
PpuMI RGGWCCY 1 cut(s) 1205
PscI ACATGT 2 cut(s) 495, 1146
PshAI GACNNNNGTC 1 cut(s) 695
PsiI TTATAA 1 cut(s) 954
Psp5II RGGWCCY 1 cut(s) 1205
PspFI CCCAGC 1 cut(s) 457
PspN4I GGNNCC 5 cut(s) 175, 939, 1024, 1206, 1528
PspPI GGNCC 5 cut(s) 97, 372, 938, 1205, 1479
PspPPI RGGWCCY 1 cut(s) 1205
PstI CTGCAG 1 cut(s) 1096
PstNI CAGNNNCTG 1 cut(s) 1394
PsuI RGATCY 1 cut(s) 1526
PvuII CAGCTG 1 cut(s) 461
RsaI GTAC 4 cut(s) 160, 905, 926, 1024
RsaNI GTAC 4 cut(s) 159, 904, 925, 1023
SaqAI TTAA 5 cut(s) 78, 642, 882, 1236, 1440
SatI GCNGC 7 cut(s) 388, 432, 462, 638, 1095, 1392, 1533
Sau3AI GATC 1 cut(s) 1526
Sau96I GGNCC 5 cut(s) 97, 372, 938, 1205, 1479
SchI GAGTC 1 cut(s) 142
SduI GDGCHC 1 cut(s) 167
SfaNI GCATC 4 cut(s) 209, 585, 964, 1347
SfcI CTRYAG 2 cut(s) 339, 1092
Sfr274I CTCGAG 1 cut(s) 1328
SfuI TTCGAA 1 cut(s) 725
SinI GGWCC 4 cut(s) 97, 372, 1205, 1479
SlaI CTCGAG 1 cut(s) 1328
SmlI CTYRAG 2 cut(s) 199, 1328
SmoI CTYRAG 2 cut(s) 199, 1328
SphI GCATGC 1 cut(s) 394
SsiI CCGC 3 cut(s) 388, 1391, 1530
SspI AATATT 4 cut(s) 489, 770, 1017, 1116
SspMI CTAG 7 cut(s) 395, 614, 890, 1160, 1242, 1256, 1425
TaaI ACNGT 4 cut(s) 475, 1027, 1232, 1276
TaiI ACGT 2 cut(s) 164, 1103
TaqI TCGA 2 cut(s) 725, 1329
TaqII GACCGA 1 cut(s) 114
TauI GCSGC 2 cut(s) 390, 1394
TfiI GAWTC 4 cut(s) 292, 662, 713, 1456
Tru1I TTAA 5 cut(s) 78, 642, 882, 1236, 1440
Tru9I TTAA 5 cut(s) 78, 642, 882, 1236, 1440
TscAI CASTG 3 cut(s) 756, 1132, 1235
TseFI GTSAC 1 cut(s) 1354
TseI GCWGC 5 cut(s) 431, 461, 637, 1094, 1532
Tsp45I GTSAC 1 cut(s) 1354
TspGWI ACGGA 2 cut(s) 426, 591
TspRI CASTG 3 cut(s) 756, 1132, 1235
Van91I CCANNNNNTGG 1 cut(s) 1394
VneI GTGCAC 1 cut(s) 163
VpaK11BI GGWCC 4 cut(s) 97, 372, 1205, 1479
XapI RAATTY 2 cut(s) 825, 1413
XceI RCATGY 3 cut(s) 394, 499, 1150
XhoI CTCGAG 1 cut(s) 1328
XmiI GTMKAC 1 cut(s) 1271
XspI CTAG 7 cut(s) 395, 614, 890, 1160, 1242, 1256, 1425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.