RH6AG165700

sphingolipid transporter spinster homolog

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0001054
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG165700.1

Sequence Viewer

Length: 1368 bp
ATGATCGTTTCTTCAATCGCACCTCTTCAGCCTTCATGGTTTTCGCCCAAGAAGTTACTTGTTGTATTTTGTGTGATTAACTTGATAAATTATGTGGACCGAGGAGCAATTGCAAGCAATGGTGTGAATGGGAGTCTGGGAACTTGTACAGAGGGTGGTACGTGCACATCTGGCACCGGCATACAGGGGGATTTTGACTTGAGCAATTTTGAAGATGGATGCCTATCATCTGCTTTTATGGTTGGACTTCTGGTGGCTTCTCCGATTTTTGCTTCATTAGCAAAGAGTGTGAATCCATTTAGGCTCATTGGAGTTGGATTGTCAGTTTGGACTTTTGCTGTAGTTGGTTGTGGTCTTTCATTCAACTTCTGGTCCATTACCATCTGCCGCATGCTAGTTGGTGTTGGCGAGGCTTCATTTATTAGTCTTGCAGCTCCGTTCATTGATGATAATGCCCCAGCTGCTCAGAAAACTCTATGGCTTTCAACATTCTACATGTGCATACCATCTGGATATGCACTTGGTTATGTTTACGGAGGCTTGGTGGGAACTACTCTCAGTTGGCGTGCTGCATTTTGGGGGGAGGGAATTCTGATGCTTCCATTTGCTATTCTAGGATTTGTTATGAAGCCTTTGCGGATGAAAGGTTTTAAGCATGATGAATCAAATGAAGCATTGACTGTGCAGGAGACGGCTGTCTCAGAAGTTCAAGGTGCTTTGAACCCGAAGGATAGGGCAGTTTCAATGAAGGAAGATGTAACAAATTCTACCATACATAAACCTTCCAAGCCAAAAATTGCAACAAAAATAAAGAATCATCTTTCAAGGTTCATGAAAGATATGAAGGATCTTTTGGTCGATAAGGTTTATGTTGTTAATGTTCTTGGTTATGTAGCATACAACTTTGTACTTGGTTCGTACTCATATTGGGGGCCTAAGGCTGGTTATAATATCTATCATATGACTAATGCAGATATGATTTTTGGAGGTATTACAATTGTGTGCGGAATATTGGGAACACTAGCAGGAGGCTTTCTTCTGGATTTCATGTCTAACACTATGTCCAATGGTTTCAAGCTTCTTTCAACAGCAACGCTTTTTGGGGCAATATTATGCTTTGGTGCCTTTTGCTTGAAGAACATGTATGGTTTCCTAGCTCTTTTTGCAGTTGGGCAACTACTTCTCTTTGCAACTCAGGGTCCTGTAAATTTTGTTTGTCTCCATTGTGTTAAACCTAGTTTGAGGCCACTATCTATGGCCATTTCTACTGTTGCAATTCACATATTTGGAGATGTGCCTTCCTCACCTCTTGTTGGAGTTGTCCAGGTTTGCATTACTATTTTCATTATCATGCTTTTGACAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1 OATP

Protein Analysis

455

Amino Acids

48.89

Weight (kDa)

8.48

Isoelectric Point (pI)

24.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 60 - 427 3e-30 Major Facilitator Superfamily
OATP PF03137 125 - 377 6.6e-19 Organic Anion Transporter Polypeptide (OATP) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 948
AccB1I GGYRCC 2 cut(s) 173, 1121
AciI CCGC 3 cut(s) 388, 637, 1005
AclWI GGATC 1 cut(s) 855
AcoI YGGCCR 1 cut(s) 1257
AcsI RAATTY 3 cut(s) 588, 763, 1207
AcuI CTGAAG 1 cut(s) 11
AfaI GTAC 4 cut(s) 148, 160, 909, 920
AfiI CCNNNNNNNGG 2 cut(s) 941, 1313
AflIII ACRYGT 2 cut(s) 495, 1140
AjnI CCWGG 1 cut(s) 1323
AjuI GAANNNNNNNTTGG 2 cut(s) 836, 868
AluBI AGCT 4 cut(s) 434, 461, 1078, 1157
AluI AGCT 4 cut(s) 434, 461, 1078, 1157
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 3 cut(s) 683, 703, 1223
Alw44I GTGCAC 1 cut(s) 163
AlwI GGATC 1 cut(s) 855
AoxI GGCC 3 cut(s) 932, 1244, 1257
ApaLI GTGCAC 1 cut(s) 163
ApeKI GCWGC 3 cut(s) 431, 461, 569
ApoI RAATTY 3 cut(s) 588, 763, 1207
AspS9I GGNCC 4 cut(s) 97, 372, 932, 1199
AsuHPI GGTGA 1 cut(s) 1296
AvaII GGWCC 3 cut(s) 97, 372, 1199
AxyI CCTNAGG 1 cut(s) 936
BaeGI GKGCMC 1 cut(s) 167
BalI TGGCCA 1 cut(s) 1259
BanI GGYRCC 2 cut(s) 173, 1121
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 3 cut(s) 443, 448, 556
BccI CCATC 3 cut(s) 209, 389, 514
BceAI ACGGC 1 cut(s) 708
BciT130I CCWGG 1 cut(s) 1325
BcoDI GTCTC 3 cut(s) 683, 703, 1223
BfaI CTAG 5 cut(s) 395, 614, 1022, 1154, 1236
BfmI CTRYAG 1 cut(s) 339
BisI GCNGC 4 cut(s) 388, 432, 462, 570
BlsI GCNGC 4 cut(s) 389, 433, 463, 571
Bme1390I CCNGG 1 cut(s) 1325
Bme18I GGWCC 3 cut(s) 97, 372, 1199
BmgT120I GGNCC 4 cut(s) 97, 372, 932, 1199
BmiI GGNNCC 4 cut(s) 175, 933, 1123, 1200
BmrFI CCNGG 1 cut(s) 1325
BmsI GCATC 2 cut(s) 209, 585
BoxI GACNNNNGTC 1 cut(s) 695
BpuEI CTTGAG 1 cut(s) 220
BsaAI YACGTR 1 cut(s) 162
BsaBI GATNNNNATC 1 cut(s) 223
BsaJI CCNNGG 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 528, 558
Bsc4I CCNNNNNNNGG 2 cut(s) 941, 1313
Bse118I RCCGGY 1 cut(s) 176
Bse21I CCTNAGG 1 cut(s) 936
Bse3DI GCAATG 1 cut(s) 124
Bse8I GATNNNNATC 1 cut(s) 223
BseBI CCWGG 1 cut(s) 1325
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 2 cut(s) 224, 645
BseJI GATNNNNATC 1 cut(s) 223
BseLI CCNNNNNNNGG 2 cut(s) 941, 1313
BseMI GCAATG 1 cut(s) 124
BseMII CTCAG 4 cut(s) 479, 571, 714, 1208
BseRI GAGGAG 1 cut(s) 117
BseSI GKGCMC 1 cut(s) 167
BseXI GCAGC 3 cut(s) 443, 448, 556
BseYI CCCAGC 1 cut(s) 457
BsgI GTGCAG 1 cut(s) 704
BshFI GGCC 3 cut(s) 934, 1246, 1259
BshNI GGYRCC 2 cut(s) 173, 1121
BsiHKAI GWGCWC 1 cut(s) 167
BsiSI CCGG 1 cut(s) 177
BslI CCNNNNNNNGG 2 cut(s) 941, 1313
BsmAI GTCTC 3 cut(s) 683, 703, 1223
BsmBI CGTCTC 1 cut(s) 683
BsnI GGCC 3 cut(s) 934, 1246, 1259
Bsp1286I GDGCHC 1 cut(s) 167
Bsp1407I TGTACA 1 cut(s) 146
Bsp143I GATC 2 cut(s) 3, 847
BspACI CCGC 3 cut(s) 388, 637, 1005
BspANI GGCC 3 cut(s) 934, 1246, 1259
BspCNI CTCAG 4 cut(s) 478, 570, 713, 1207
BspHI TCATGA 1 cut(s) 831
BspLI GGNNCC 4 cut(s) 175, 933, 1123, 1200
BspPI GGATC 1 cut(s) 855
BspT107I GGYRCC 2 cut(s) 173, 1121
BsrDI GCAATG 1 cut(s) 124
BsrFI RCCGGY 1 cut(s) 176
BsrGI TGTACA 1 cut(s) 146
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 2 cut(s) 3, 847
Bst2UI CCWGG 1 cut(s) 1325
Bst4CI ACNGT 2 cut(s) 682, 1270
Bst6I CTCTTC 1 cut(s) 30
BstAUI TGTACA 1 cut(s) 146
BstBAI YACGTR 1 cut(s) 162
BstC8I GCNNGC 3 cut(s) 115, 392, 567
BstDEI CTNAG 5 cut(s) 465, 557, 700, 936, 1194
BstF5I GGATG 2 cut(s) 224, 645
BstKTI GATC 2 cut(s) 6, 850
BstMAI GTCTC 3 cut(s) 683, 703, 1223
BstMBI GATC 2 cut(s) 3, 847
BstMWI GCNNNNNNNGC 4 cut(s) 171, 278, 461, 1163
BstNI CCWGG 1 cut(s) 1325
BstNSI RCATGY 3 cut(s) 394, 499, 1144
BstPAI GACNNNNGTC 1 cut(s) 695
BstSCI CCNGG 1 cut(s) 1323
BstSFI CTRYAG 1 cut(s) 339
BstSLI GKGCMC 1 cut(s) 167
BstV1I GCAGC 3 cut(s) 443, 448, 556
BstX2I RGATCY 1 cut(s) 847
BstYI RGATCY 1 cut(s) 847
Bsu36I CCTNAGG 1 cut(s) 936
BsuRI GGCC 3 cut(s) 934, 1246, 1259
BtsCI GGATG 2 cut(s) 224, 645
Cac8I GCNNGC 3 cut(s) 115, 392, 567
CciI TCATGA 1 cut(s) 831
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 4 cut(s) 97, 372, 932, 1199
Csp6I GTAC 4 cut(s) 147, 159, 908, 919
CviAII CATG 8 cut(s) 36, 391, 496, 656, 832, 1048, 1141, 1351
CviQI GTAC 4 cut(s) 147, 159, 908, 919
DdeI CTNAG 5 cut(s) 465, 557, 700, 936, 1194
DpnI GATC 2 cut(s) 5, 849
DpnII GATC 2 cut(s) 3, 847
EaeI YGGCCR 1 cut(s) 1257
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco47I GGWCC 3 cut(s) 97, 372, 1199
Eco57I CTGAAG 1 cut(s) 11
Eco81I CCTNAGG 1 cut(s) 936
EcoO109I RGGNCCY 2 cut(s) 932, 1199
EcoRI GAATTC 1 cut(s) 588
EcoRII CCWGG 1 cut(s) 1323
Esp3I CGTCTC 1 cut(s) 683
FaeI CATG 8 cut(s) 39, 394, 499, 659, 835, 1051, 1144, 1354
FatI CATG 8 cut(s) 35, 390, 495, 655, 831, 1047, 1140, 1350
FauNDI CATATG 1 cut(s) 960
Fnu4HI GCNGC 4 cut(s) 388, 432, 462, 570
FokI GGATG 2 cut(s) 231, 652
Fsp4HI GCNGC 4 cut(s) 388, 432, 462, 570
FspBI CTAG 5 cut(s) 395, 614, 1022, 1154, 1236
GluI GCNGC 4 cut(s) 388, 432, 462, 570
GsaI CCCAGC 1 cut(s) 461
HaeIII GGCC 3 cut(s) 934, 1246, 1259
HapII CCGG 1 cut(s) 177
Hin1II CATG 8 cut(s) 39, 394, 499, 659, 835, 1051, 1144, 1354
HindIII AAGCTT 1 cut(s) 1076
HinfI GANTC 4 cut(s) 133, 292, 662, 814
HpaII CCGG 1 cut(s) 177
HphI GGTGA 1 cut(s) 1296
Hpy166II GTNNAC 3 cut(s) 97, 165, 532
Hpy188I TCNGA 4 cut(s) 264, 468, 594, 703
Hpy188III TCNNGA 3 cut(s) 510, 832, 1040
Hpy8I GTNNAC 3 cut(s) 97, 165, 532
HpyAV CCTTC 6 cut(s) 42, 721, 742, 792, 838, 1308
HpyCH4III ACNGT 2 cut(s) 682, 1270
HpyCH4IV ACGT 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 4 cut(s) 171, 278, 461, 1163
HpyF3I CTNAG 5 cut(s) 465, 557, 700, 936, 1194
HpySE526I ACGT 1 cut(s) 161
Hsp92II CATG 8 cut(s) 39, 394, 499, 659, 835, 1051, 1144, 1354
Kzo9I GATC 2 cut(s) 3, 847
LmnI GCTCC 2 cut(s) 104, 439
Lsp1109I GCAGC 3 cut(s) 443, 448, 556
LweI GCATC 2 cut(s) 209, 585
MaeI CTAG 5 cut(s) 395, 614, 1022, 1154, 1236
MaeII ACGT 1 cut(s) 161
MaeIII GTNAC 2 cut(s) 54, 757
MalI GATC 2 cut(s) 5, 849
MboI GATC 2 cut(s) 3, 847
MboII GAAGA 6 cut(s) 3, 17, 224, 764, 1028, 1147
MfeI CAATTG 2 cut(s) 108, 996
MflI RGATCY 1 cut(s) 847
MhlI GDGCHC 1 cut(s) 167
MlsI TGGCCA 1 cut(s) 1259
MluNI TGGCCA 1 cut(s) 1259
MlyI GAGTC 1 cut(s) 142
MmeI TCCRAC 3 cut(s) 223, 295, 1294
Mox20I TGGCCA 1 cut(s) 1259
MscI TGGCCA 1 cut(s) 1259
MseI TTAA 4 cut(s) 78, 651, 876, 1230
MslI CAYNNNNRTG 1 cut(s) 1349
Msp20I TGGCCA 1 cut(s) 1259
MspA1I CMGCKG 1 cut(s) 461
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 1 cut(s) 1325
MunI CAATTG 2 cut(s) 108, 996
MvaI CCWGG 1 cut(s) 1325
MwoI GCNNNNNNNGC 4 cut(s) 171, 278, 461, 1163
NdeI CATATG 1 cut(s) 960
NdeII GATC 2 cut(s) 3, 847
NlaIII CATG 8 cut(s) 39, 394, 499, 659, 835, 1051, 1144, 1354
NlaIV GGNNCC 4 cut(s) 175, 933, 1123, 1200
NspI RCATGY 3 cut(s) 394, 499, 1144
PaeI GCATGC 1 cut(s) 394
PagI TCATGA 1 cut(s) 831
PciI ACATGT 2 cut(s) 495, 1140
PfeI GAWTC 3 cut(s) 292, 662, 814
PkrI GCNGC 4 cut(s) 389, 433, 463, 571
PleI GAGTC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 141
Ppu21I YACGTR 1 cut(s) 162
PpuMI RGGWCCY 1 cut(s) 1199
PscI ACATGT 2 cut(s) 495, 1140
PshAI GACNNNNGTC 1 cut(s) 695
PsiI TTATAA 1 cut(s) 948
Psp5II RGGWCCY 1 cut(s) 1199
Psp6I CCWGG 1 cut(s) 1323
PspFI CCCAGC 1 cut(s) 457
PspGI CCWGG 1 cut(s) 1323
PspN4I GGNNCC 4 cut(s) 175, 933, 1123, 1200
PspPI GGNCC 4 cut(s) 97, 372, 932, 1199
PspPPI RGGWCCY 1 cut(s) 1199
PsuI RGATCY 1 cut(s) 847
PvuII CAGCTG 1 cut(s) 461
RsaI GTAC 4 cut(s) 148, 160, 909, 920
RsaNI GTAC 4 cut(s) 147, 159, 908, 919
RseI CAYNNNNRTG 1 cut(s) 1349
SaqAI TTAA 4 cut(s) 78, 651, 876, 1230
SatI GCNGC 4 cut(s) 388, 432, 462, 570
Sau3AI GATC 2 cut(s) 3, 847
Sau96I GGNCC 4 cut(s) 97, 372, 932, 1199
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 1325
SduI GDGCHC 1 cut(s) 167
SfaNI GCATC 2 cut(s) 209, 585
SfcI CTRYAG 1 cut(s) 339
SinI GGWCC 3 cut(s) 97, 372, 1199
SmiMI CAYNNNNRTG 1 cut(s) 1349
SmlI CTYRAG 1 cut(s) 199
SmoI CTYRAG 1 cut(s) 199
SphI GCATGC 1 cut(s) 394
SsiI CCGC 3 cut(s) 388, 637, 1005
SspI AATATT 2 cut(s) 1011, 1110
SspMI CTAG 5 cut(s) 395, 614, 1022, 1154, 1236
StyD4I CCNGG 1 cut(s) 1323
TaaI ACNGT 2 cut(s) 682, 1270
TaiI ACGT 1 cut(s) 164
TaqI TCGA 1 cut(s) 858
TaqII GACCGA 1 cut(s) 114
TatI WGTACW 2 cut(s) 146, 907
TauI GCSGC 1 cut(s) 390
TfiI GAWTC 3 cut(s) 292, 662, 814
Tru1I TTAA 4 cut(s) 78, 651, 876, 1230
Tru9I TTAA 4 cut(s) 78, 651, 876, 1230
TseI GCWGC 3 cut(s) 431, 461, 569
TspGWI ACGGA 2 cut(s) 426, 549
VneI GTGCAC 1 cut(s) 163
VpaK11BI GGWCC 3 cut(s) 97, 372, 1199
XapI RAATTY 3 cut(s) 588, 763, 1207
XceI RCATGY 3 cut(s) 394, 499, 1144
XspI CTAG 5 cut(s) 395, 614, 1022, 1154, 1236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.