Rh6DG079900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001054
Physical Location & Seq
Reverse (-)
9091063 .. 9091245
183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG079900.1

Sequence Viewer

Length: 183 bp
ATGATAAAAGCCAGCCCGCCGCAGATCGAGGAGGGGTTCAAATTGCTGACGGAGAACGTGAAGAATGTGGAGAAGCTAGCCGGAAACGGAGTGGAGGGTTGCTTGAAGCGGACGGGCTTCGAGTACAGCACTCTGCTGGCGCCGGAGTTGCATTCTGATAGAGGAAGACGAAGACCCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

6.7

Weight (kDa)

8.98

Isoelectric Point (pI)

59.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 139
AciI CCGC 3 cut(s) 17, 20, 109
AcyI GRCGYC 1 cut(s) 140
AfaI GTAC 1 cut(s) 125
AgsI TTSAA 2 cut(s) 40, 106
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
AspLEI GCGC 1 cut(s) 142
AsuNHI GCTAGC 1 cut(s) 76
BanI GGYRCC 1 cut(s) 139
BbsI GAAGAC 2 cut(s) 172, 178
BfaI CTAG 1 cut(s) 77
BfoI RGCGCY 1 cut(s) 143
BisI GCNGC 1 cut(s) 20
BlsI GCNGC 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 141
BmtI GCTAGC 1 cut(s) 80
BpiI GAAGAC 2 cut(s) 172, 178
BsaHI GRCGYC 1 cut(s) 140
BseRI GAGGAG 1 cut(s) 44
BshNI GGYRCC 1 cut(s) 139
BsiSI CCGG 2 cut(s) 81, 143
BsmI GAATGC 1 cut(s) 151
Bsp143I GATC 1 cut(s) 24
BspACI CCGC 3 cut(s) 17, 20, 109
BspLI GGNNCC 1 cut(s) 141
BspOI GCTAGC 1 cut(s) 80
BspT107I GGYRCC 1 cut(s) 139
BssMI GATC 1 cut(s) 24
BssNI GRCGYC 1 cut(s) 140
BstACI GRCGYC 1 cut(s) 140
BstC8I GCNNGC 4 cut(s) 13, 17, 78, 138
BstH2I RGCGCY 1 cut(s) 143
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 1 cut(s) 27
BstMBI GATC 1 cut(s) 24
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstV2I GAAGAC 2 cut(s) 172, 178
Cac8I GCNNGC 4 cut(s) 13, 17, 78, 138
CfoI GCGC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 124
CviJI RGCY 5 cut(s) 11, 15, 76, 80, 117
CviKI_1 RGCY 5 cut(s) 11, 15, 76, 80, 117
CviQI GTAC 1 cut(s) 124
DinI GGCGCC 1 cut(s) 141
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
EgeI GGCGCC 1 cut(s) 141
EheI GGCGCC 1 cut(s) 141
FauI CCCGC 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 20
FspBI CTAG 1 cut(s) 77
GlaI GCGC 1 cut(s) 141
GluI GCNGC 1 cut(s) 20
HaeII RGCGCY 1 cut(s) 143
HapII CCGG 2 cut(s) 81, 143
HhaI GCGC 1 cut(s) 142
Hin1I GRCGYC 1 cut(s) 140
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HpaII CCGG 2 cut(s) 81, 143
Hpy188I TCNGA 1 cut(s) 157
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 140
HspAI GCGC 1 cut(s) 140
KasI GGCGCC 1 cut(s) 139
Kzo9I GATC 1 cut(s) 24
LpnPI CCDG 4 cut(s) 25, 94, 122, 156
MaeI CTAG 1 cut(s) 77
MaeII ACGT 1 cut(s) 57
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 3 cut(s) 73, 177, 183
MluCI AATT 1 cut(s) 41
Mly113I GGCGCC 1 cut(s) 140
MnlI CCTC 4 cut(s) 22, 25, 88, 155
MspI CCGG 2 cut(s) 81, 143
Mva1269I GAATGC 1 cut(s) 151
MwoI GCNNNNNNNGC 1 cut(s) 148
NarI GGCGCC 1 cut(s) 140
NdeII GATC 1 cut(s) 24
NheI GCTAGC 1 cut(s) 76
NlaIV GGNNCC 1 cut(s) 141
PctI GAATGC 1 cut(s) 151
PkrI GCNGC 1 cut(s) 21
PluTI GGCGCC 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 141
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SatI GCNGC 1 cut(s) 20
Sau3AI GATC 1 cut(s) 24
SetI ASST 2 cut(s) 60, 78
SfoI GGCGCC 1 cut(s) 141
Sse9I AATT 1 cut(s) 41
SsiI CCGC 3 cut(s) 17, 20, 109
SspDI GGCGCC 1 cut(s) 139
SspMI CTAG 1 cut(s) 77
TaiI ACGT 1 cut(s) 60
TaqI TCGA 2 cut(s) 27, 120
TasI AATT 1 cut(s) 41
TatI WGTACW 1 cut(s) 123
TauI GCSGC 1 cut(s) 22
TspGWI ACGGA 2 cut(s) 65, 102
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.