Rh7BG367400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001054
Physical Location & Seq
Forward (+)
39285933 .. 39286172
240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG367400.1

Sequence Viewer

Length: 240 bp
ATGCTCTGGAGCCCCAAGAACCCGCCGGCGTCTCCGACAACCTCATCGTCCGGCGAGATGATAAAAGCCAGCTCGCCGCCGATCGAGGATGGGTTCAAATTGCTGACGGAGAACGTGAAGAATGTGGAGAAGCTAGCCGAAAACAGAGTGGAGGGTTGCTTGAAGCGAACGATCTTCGAGTACAGCACTCTGCCGGCGCTGGAGTTGCATTCTGATAGAGGAAGACGAAGACCCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.82

Weight (kDa)

8.93

Isoelectric Point (pI)

73.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 23, 77
AcyI GRCGYC 1 cut(s) 29
AfaI GTAC 1 cut(s) 182
AgsI TTSAA 2 cut(s) 97, 163
AluBI AGCT 2 cut(s) 72, 133
AluI AGCT 2 cut(s) 72, 133
Alw26I GTCTC 1 cut(s) 36
AspLEI GCGC 1 cut(s) 199
AsuNHI GCTAGC 1 cut(s) 133
BanII GRGCYC 1 cut(s) 14
BbsI GAAGAC 2 cut(s) 229, 235
BccI CCATC 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 36
BfaI CTAG 1 cut(s) 134
BfoI RGCGCY 1 cut(s) 200
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
BmiI GGNNCC 1 cut(s) 11
BmtI GCTAGC 1 cut(s) 137
BpiI GAAGAC 2 cut(s) 229, 235
BpmI CTGGAG 2 cut(s) 28, 221
BsaHI GRCGYC 1 cut(s) 29
Bse118I RCCGGY 2 cut(s) 25, 193
BseGI GGATG 1 cut(s) 94
Bsh1285I CGRYCG 1 cut(s) 84
BsiEI CGRYCG 1 cut(s) 84
BsiSI CCGG 3 cut(s) 26, 51, 194
BsmAI GTCTC 1 cut(s) 36
BsmBI CGTCTC 1 cut(s) 36
BsmI GAATGC 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 2 cut(s) 81, 171
BspACI CCGC 2 cut(s) 23, 77
BspLI GGNNCC 1 cut(s) 11
BspOI GCTAGC 1 cut(s) 137
BsrFI RCCGGY 2 cut(s) 25, 193
BssAI RCCGGY 2 cut(s) 25, 193
BssMI GATC 2 cut(s) 81, 171
BssNI GRCGYC 1 cut(s) 29
BstACI GRCGYC 1 cut(s) 29
BstC8I GCNNGC 5 cut(s) 27, 70, 74, 135, 195
BstF5I GGATG 1 cut(s) 94
BstH2I RGCGCY 1 cut(s) 200
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 2 cut(s) 84, 174
BstMAI GTCTC 1 cut(s) 36
BstMBI GATC 2 cut(s) 81, 171
BstMCI CGRYCG 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstV2I GAAGAC 2 cut(s) 229, 235
BtsCI GGATG 1 cut(s) 94
Cac8I GCNNGC 5 cut(s) 27, 70, 74, 135, 195
CfoI GCGC 1 cut(s) 199
Cfr10I RCCGGY 2 cut(s) 25, 193
CseI GACGC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 181
CviJI RGCY 5 cut(s) 12, 68, 72, 133, 137
CviKI_1 RGCY 5 cut(s) 12, 68, 72, 133, 137
CviQI GTAC 1 cut(s) 181
DpnI GATC 2 cut(s) 83, 173
DpnII GATC 2 cut(s) 81, 171
Eco24I GRGCYC 1 cut(s) 14
EcoT38I GRGCYC 1 cut(s) 14
Esp3I CGTCTC 1 cut(s) 36
FauI CCCGC 1 cut(s) 30
Fnu4HI GCNGC 1 cut(s) 77
FokI GGATG 1 cut(s) 101
FriOI GRGCYC 1 cut(s) 14
Fsp4HI GCNGC 1 cut(s) 77
FspBI CTAG 1 cut(s) 134
GlaI GCGC 1 cut(s) 198
GluI GCNGC 1 cut(s) 77
GsuI CTGGAG 2 cut(s) 28, 221
HaeII RGCGCY 1 cut(s) 200
HapII CCGG 3 cut(s) 26, 51, 194
HgaI GACGC 1 cut(s) 18
HhaI GCGC 1 cut(s) 199
Hin1I GRCGYC 1 cut(s) 29
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HpaII CCGG 3 cut(s) 26, 51, 194
Hpy188I TCNGA 2 cut(s) 36, 214
Hpy188III TCNNGA 1 cut(s) 7
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 1 cut(s) 208
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpySE526I ACGT 1 cut(s) 114
Hsp92I GRCGYC 1 cut(s) 29
HspAI GCGC 1 cut(s) 197
KroI GCCGGC 2 cut(s) 25, 193
KroNI GCCGGC 2 cut(s) 27, 195
Kzo9I GATC 2 cut(s) 81, 171
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 5 cut(s) 39, 64, 82, 185, 207
MaeI CTAG 1 cut(s) 134
MaeII ACGT 1 cut(s) 114
MalI GATC 2 cut(s) 83, 173
MboI GATC 2 cut(s) 81, 171
MboII GAAGA 4 cut(s) 130, 166, 234, 240
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 1 cut(s) 98
MmeI TCCRAC 1 cut(s) 59
MnlI CCTC 4 cut(s) 52, 79, 145, 212
MreI CGCCGGCG 1 cut(s) 25
MroNI GCCGGC 2 cut(s) 25, 193
MspI CCGG 3 cut(s) 26, 51, 194
Mva1269I GAATGC 1 cut(s) 208
MwoI GCNNNNNNNGC 1 cut(s) 205
NaeI GCCGGC 2 cut(s) 27, 195
NdeII GATC 2 cut(s) 81, 171
NgoMIV GCCGGC 2 cut(s) 25, 193
NheI GCTAGC 1 cut(s) 133
NlaIV GGNNCC 1 cut(s) 11
PctI GAATGC 1 cut(s) 208
PdiI GCCGGC 2 cut(s) 27, 195
PkrI GCNGC 1 cut(s) 78
Ple19I CGATCG 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 11
PvuI CGATCG 1 cut(s) 84
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 2 cut(s) 81, 171
SduI GDGCHC 1 cut(s) 14
SetI ASST 4 cut(s) 44, 74, 117, 135
SgrAI CRCCGGYG 1 cut(s) 25
Sse9I AATT 1 cut(s) 98
SsiI CCGC 2 cut(s) 23, 77
SspMI CTAG 1 cut(s) 134
TaiI ACGT 1 cut(s) 117
TaqI TCGA 2 cut(s) 84, 177
TasI AATT 1 cut(s) 98
TatI WGTACW 1 cut(s) 180
TauI GCSGC 1 cut(s) 79
TspGWI ACGGA 1 cut(s) 122
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.