Rroxscaffold_1G00004920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001054
Physical Location & Seq
Reverse (-)
6697559 .. 6698705
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00004920.1

Sequence Viewer

Length: 801 bp
ATGGACATGAAGAAGATTGCCTTTGTCGTCCTTGTCGTCGCCGTCTGCATGACCGCAGTCATGGCCGCTGAAGTTGAAAAGCCAAAGCCCAAAGCTACGAAAGCTGGTGCCCCTGCCCCGGCTCCCATAGGTTCCAACGCAGCCGCTCCTACTCCCACTGATGGCACTCCCACTGGGGCTCCTGCACCTGCACATTCCTCTGCCAACACCATAGTTGGGTCCTTGGCTGGAGCTTCACTCGTGTCCTTCTTGGCCCTTTACCTGCAAACGTCGTTGGCTGGGATTGCGCCTGTCCGGCTGCTCCTCGGTGCTGGCACGAGCCACCGGCCTTGTCTTTGCACCGTGCATGTGGCTGAACGGGTCCCGTTGACCGTGGCCAGGTCCGACACTCGGAGGCTATGGTGTGGAGGTTTCTTTACCCATTTATTCTCCGATCCGGCTGCACCGGGGTTTGATCCGTCGTTGAGGGATGGGATCGACGTTGGGTGGATCCACGATGCGGCGATGGGACAAGCGGTGGTGCTACCATGGGTAGGTGGAGGGATAGAGAGGGGCGGTGTTTGGGCGGGTTTCCTCTCGGGTCCGGATCCCCGATCCGGATCCGGGTCGCGTAGGGATGGGATCGTGGAGTTGGATGGTGTCCTCCTGTGGTGGTCCGACCGCGCCGACGGAGCGGCGGTGGTGGAGACCGACGTCGGTGGCGGAGTGGTGGGCGTGGTGGTGCGGGCGAGATCTTGGGCTGGGCGTGAAGAATGGAGGCCAACCGCAGCTTGTGCTGCGGGCTTGGGCTTTGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

27.15

Weight (kDa)

6.95

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 196
AatII GACGTC 1 cut(s) 696
Acc36I ACCTGC 2 cut(s) 196, 270
AccB1I GGYRCC 1 cut(s) 107
AccBSI CCGCTC 2 cut(s) 146, 674
AccII CGCG 2 cut(s) 610, 663
AccIII TCCGGA 2 cut(s) 583, 596
AcoI YGGCCR 2 cut(s) 63, 375
AcuI CTGAAG 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 693
AfiI CCNNNNNNNGG 9 cut(s) 118, 161, 216, 378, 390, 499, 533, 596, 603
AgsI TTSAA 1 cut(s) 77
AjnI CCWGG 1 cut(s) 377
AluBI AGCT 4 cut(s) 95, 104, 233, 770
AluI AGCT 4 cut(s) 95, 104, 233, 770
Alw26I GTCTC 1 cut(s) 680
Ama87I CYCGRG 1 cut(s) 577
Aor13HI TCCGGA 2 cut(s) 583, 596
AoxI GGCC 5 cut(s) 63, 252, 326, 375, 758
ApeKI GCWGC 5 cut(s) 140, 298, 440, 767, 776
AspLEI GCGC 2 cut(s) 289, 665
AspS9I GGNCC 6 cut(s) 219, 253, 361, 381, 581, 654
AsuC2I CCSGG 3 cut(s) 119, 447, 604
AvaI CYCGRG 1 cut(s) 577
AvaII GGWCC 5 cut(s) 219, 361, 381, 581, 654
BaeGI GKGCMC 1 cut(s) 112
BalI TGGCCA 1 cut(s) 377
BamHI GGATCC 3 cut(s) 489, 586, 599
BanI GGYRCC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 181
BauI CACGAG 2 cut(s) 239, 316
BbvI GCAGC 5 cut(s) 152, 285, 427, 763, 779
BccI CCATC 5 cut(s) 155, 464, 499, 611, 629
BceAI ACGGC 1 cut(s) 26
BcgI CGANNNNNNTGC 2 cut(s) 422, 456
BciT130I CCWGG 1 cut(s) 379
BcnI CCSGG 3 cut(s) 119, 447, 604
BcoDI GTCTC 1 cut(s) 680
BfuAI ACCTGC 2 cut(s) 196, 270
BglI GCCNNNNNGGC 1 cut(s) 295
BglII AGATCT 1 cut(s) 731
BisI GCNGC 9 cut(s) 66, 141, 144, 299, 441, 501, 675, 768, 777
BlsI GCNGC 9 cut(s) 67, 142, 145, 300, 442, 502, 676, 769, 778
Bme1390I CCNGG 4 cut(s) 119, 379, 447, 604
Bme18I GGWCC 5 cut(s) 219, 361, 381, 581, 654
BmeT110I CYCGRG 1 cut(s) 577
BmgT120I GGNCC 6 cut(s) 219, 253, 361, 381, 581, 654
BmrFI CCNGG 4 cut(s) 119, 379, 447, 604
BmrI ACTGGG 1 cut(s) 183
BmsI GCATC 1 cut(s) 487
BmuI ACTGGG 1 cut(s) 183
BoxI GACNNNNGTC 2 cut(s) 56, 692
BplI GAGNNNNNCTC 2 cut(s) 222, 254
BpmI CTGGAG 1 cut(s) 249
BpuMI CCSGG 3 cut(s) 119, 447, 604
BsaBI GATNNNNATC 1 cut(s) 598
BsaHI GRCGYC 1 cut(s) 693
BsaI GGTCTC 1 cut(s) 680
BsaJI CCNNGG 6 cut(s) 117, 222, 304, 372, 446, 527
BsaWI WCCGGW 2 cut(s) 583, 596
BsaXI ACNNNNNCTCC 4 cut(s) 163, 193, 663, 693
Bsc4I CCNNNNNNNGG 9 cut(s) 118, 161, 216, 378, 390, 499, 533, 596, 603
Bse118I RCCGGY 1 cut(s) 324
Bse1I ACTGG 1 cut(s) 178
Bse8I GATNNNNATC 1 cut(s) 598
BseAI TCCGGA 2 cut(s) 583, 596
BseBI CCWGG 1 cut(s) 379
BseDI CCNNGG 6 cut(s) 117, 222, 304, 372, 446, 527
BseGI GGATG 3 cut(s) 475, 622, 640
BseJI GATNNNNATC 1 cut(s) 598
BseLI CCNNNNNNNGG 9 cut(s) 118, 161, 216, 378, 390, 499, 533, 596, 603
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 1 cut(s) 293
BseSI GKGCMC 1 cut(s) 112
BseXI GCAGC 5 cut(s) 152, 285, 427, 763, 779
BseYI CCCAGC 2 cut(s) 278, 740
BsgI GTGCAG 3 cut(s) 168, 174, 426
Bsh1236I CGCG 2 cut(s) 610, 663
Bsh1285I CGRYCG 1 cut(s) 661
BshFI GGCC 5 cut(s) 65, 254, 328, 377, 760
BshNI GGYRCC 1 cut(s) 107
BsiEI CGRYCG 1 cut(s) 661
BsiHKCI CYCGRG 1 cut(s) 577
BsiSI CCGG 8 cut(s) 119, 295, 325, 437, 446, 584, 597, 603
BslFI GGGAC 2 cut(s) 347, 522
BslI CCNNNNNNNGG 9 cut(s) 118, 161, 216, 378, 390, 499, 533, 596, 603
BsmAI GTCTC 1 cut(s) 680
BsmFI GGGAC 2 cut(s) 347, 522
BsnI GGCC 5 cut(s) 65, 254, 328, 377, 760
Bso31I GGTCTC 1 cut(s) 680
BsoBI CYCGRG 1 cut(s) 577
Bsp1286I GDGCHC 2 cut(s) 112, 181
Bsp13I TCCGGA 2 cut(s) 583, 596
Bsp143I GATC 9 cut(s) 433, 454, 474, 489, 586, 593, 599, 621, 731
Bsp19I CCATGG 1 cut(s) 527
BspANI GGCC 5 cut(s) 65, 254, 328, 377, 760
BspEI TCCGGA 2 cut(s) 583, 596
BspFNI CGCG 2 cut(s) 610, 663
BspMI ACCTGC 2 cut(s) 196, 270
BspT107I GGYRCC 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 680
BsrBI CCGCTC 2 cut(s) 146, 674
BsrFI RCCGGY 1 cut(s) 324
BsrI ACTGG 1 cut(s) 178
BssAI RCCGGY 1 cut(s) 324
BssECI CCNNGG 6 cut(s) 117, 222, 304, 372, 446, 527
BssMI GATC 9 cut(s) 433, 454, 474, 489, 586, 593, 599, 621, 731
BssNI GRCGYC 1 cut(s) 693
BssSI CACGAG 2 cut(s) 239, 316
BssT1I CCWWGG 2 cut(s) 222, 527
Bst2BI CACGAG 2 cut(s) 239, 316
Bst2UI CCWGG 1 cut(s) 379
Bst4CI ACNGT 2 cut(s) 343, 373
BstACI GRCGYC 1 cut(s) 693
BstAPI GCANNNNNTGC 1 cut(s) 773
BstC8I GCNNGC 3 cut(s) 313, 726, 781
BstDSI CCRYGG 2 cut(s) 372, 527
BstF5I GGATG 3 cut(s) 475, 622, 640
BstFNI CGCG 2 cut(s) 610, 663
BstHHI GCGC 2 cut(s) 289, 665
BstKTI GATC 9 cut(s) 436, 457, 477, 492, 589, 596, 602, 624, 734
BstMAI GTCTC 1 cut(s) 680
BstMBI GATC 9 cut(s) 433, 454, 474, 489, 586, 593, 599, 621, 731
BstMCI CGRYCG 1 cut(s) 661
BstMWI GCNNNNNNNGC 7 cut(s) 62, 101, 284, 295, 671, 773, 776
BstNI CCWGG 1 cut(s) 379
BstNSI RCATGY 1 cut(s) 350
BstPAI GACNNNNGTC 2 cut(s) 56, 692
BstSCI CCNGG 4 cut(s) 117, 377, 445, 602
BstSLI GKGCMC 1 cut(s) 112
BstUI CGCG 2 cut(s) 610, 663
BstV1I GCAGC 5 cut(s) 152, 285, 427, 763, 779
BstX2I RGATCY 4 cut(s) 489, 586, 599, 731
BstYI RGATCY 4 cut(s) 489, 586, 599, 731
BsuRI GGCC 5 cut(s) 65, 254, 328, 377, 760
BtgI CCRYGG 2 cut(s) 372, 527
BtgZI GCGATG 1 cut(s) 518
BtsCI GGATG 3 cut(s) 475, 622, 640
BtsIMutI CAGTG 2 cut(s) 156, 171
BveI ACCTGC 2 cut(s) 196, 270
Cac8I GCNNGC 3 cut(s) 313, 726, 781
CfoI GCGC 2 cut(s) 289, 665
Cfr10I RCCGGY 1 cut(s) 324
Cfr13I GGNCC 6 cut(s) 219, 253, 361, 381, 581, 654
CspCI CAANNNNNGTGG 2 cut(s) 311, 346
CviAII CATG 5 cut(s) 7, 49, 61, 347, 528
DpnI GATC 9 cut(s) 435, 456, 476, 491, 588, 595, 601, 623, 733
DpnII GATC 9 cut(s) 433, 454, 474, 489, 586, 593, 599, 621, 731
EaeI YGGCCR 2 cut(s) 63, 375
EciI GGCGGA 1 cut(s) 717
Eco130I CCWWGG 2 cut(s) 222, 527
Eco24I GRGCYC 1 cut(s) 181
Eco31I GGTCTC 1 cut(s) 680
Eco47I GGWCC 5 cut(s) 219, 361, 381, 581, 654
Eco57I CTGAAG 1 cut(s) 90
Eco88I CYCGRG 1 cut(s) 577
EcoO109I RGGNCCY 2 cut(s) 219, 361
EcoRII CCWGG 1 cut(s) 377
EcoT14I CCWWGG 2 cut(s) 222, 527
EcoT38I GRGCYC 1 cut(s) 181
ErhI CCWWGG 2 cut(s) 222, 527
FaeI CATG 5 cut(s) 10, 52, 64, 350, 531
FaiI YATR 8 cut(s) 8, 50, 62, 128, 212, 348, 400, 529
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 2 cut(s) 347, 522
FatI CATG 5 cut(s) 6, 48, 60, 346, 527
FauI CCCGC 3 cut(s) 559, 717, 772
Fnu4HI GCNGC 9 cut(s) 66, 141, 144, 299, 441, 501, 675, 768, 777
FokI GGATG 3 cut(s) 482, 629, 647
FriOI GRGCYC 1 cut(s) 181
Fsp4HI GCNGC 9 cut(s) 66, 141, 144, 299, 441, 501, 675, 768, 777
GlaI GCGC 2 cut(s) 288, 664
GluI GCNGC 9 cut(s) 66, 141, 144, 299, 441, 501, 675, 768, 777
GsaI CCCAGC 2 cut(s) 282, 744
GsuI CTGGAG 1 cut(s) 249
HaeIII GGCC 5 cut(s) 65, 254, 328, 377, 760
HapII CCGG 8 cut(s) 119, 295, 325, 437, 446, 584, 597, 603
HhaI GCGC 2 cut(s) 289, 665
Hin1I GRCGYC 1 cut(s) 693
Hin1II CATG 5 cut(s) 10, 52, 64, 350, 531
Hin6I GCGC 2 cut(s) 287, 663
HinP1I GCGC 2 cut(s) 287, 663
HincII GTYRAC 1 cut(s) 369
HindII GTYRAC 1 cut(s) 369
HpaII CCGG 8 cut(s) 119, 295, 325, 437, 446, 584, 597, 603
Hpy166II GTNNAC 1 cut(s) 369
Hpy188I TCNGA 4 cut(s) 385, 393, 433, 658
Hpy188III TCNNGA 2 cut(s) 584, 597
Hpy8I GTNNAC 1 cut(s) 369
Hpy99I CGWCG 7 cut(s) 41, 274, 463, 482, 671, 695, 698
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 2 cut(s) 343, 373
HpyCH4IV ACGT 3 cut(s) 269, 480, 693
HpyCH4V TGCA 7 cut(s) 48, 185, 191, 265, 339, 346, 443
HpyF10VI GCNNNNNNNGC 7 cut(s) 62, 101, 284, 295, 671, 773, 776
HpySE526I ACGT 3 cut(s) 269, 480, 693
Hsp92I GRCGYC 1 cut(s) 693
Hsp92II CATG 5 cut(s) 10, 52, 64, 350, 531
HspAI GCGC 2 cut(s) 287, 663
KflI GGGWCCC 1 cut(s) 361
Kpn2I TCCGGA 2 cut(s) 583, 596
Kzo9I GATC 9 cut(s) 433, 454, 474, 489, 586, 593, 599, 621, 731
LmnI GCTCC 6 cut(s) 127, 151, 184, 230, 306, 671
Lsp1109I GCAGC 5 cut(s) 152, 285, 427, 763, 779
LweI GCATC 1 cut(s) 487
MaeII ACGT 3 cut(s) 269, 480, 693
MalI GATC 9 cut(s) 435, 456, 476, 491, 588, 595, 601, 623, 733
MbiI CCGCTC 2 cut(s) 146, 674
MboI GATC 9 cut(s) 433, 454, 474, 489, 586, 593, 599, 621, 731
MboII GAAGA 3 cut(s) 22, 25, 761
MflI RGATCY 4 cut(s) 489, 586, 599, 731
MhlI GDGCHC 2 cut(s) 112, 181
MlsI TGGCCA 1 cut(s) 377
MluNI TGGCCA 1 cut(s) 377
MmeI TCCRAC 4 cut(s) 159, 408, 612, 681
Mox20I TGGCCA 1 cut(s) 377
MroI TCCGGA 2 cut(s) 583, 596
MscI TGGCCA 1 cut(s) 377
Msp20I TGGCCA 1 cut(s) 377
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 8 cut(s) 119, 295, 325, 437, 446, 584, 597, 603
MspR9I CCNGG 4 cut(s) 119, 379, 447, 604
MvaI CCWGG 1 cut(s) 379
MvnI CGCG 2 cut(s) 610, 663
MwoI GCNNNNNNNGC 7 cut(s) 62, 101, 284, 295, 671, 773, 776
NciI CCSGG 3 cut(s) 119, 447, 604
NcoI CCATGG 1 cut(s) 527
NdeII GATC 9 cut(s) 433, 454, 474, 489, 586, 593, 599, 621, 731
NlaIII CATG 5 cut(s) 10, 52, 64, 350, 531
NspI RCATGY 1 cut(s) 350
PaqCI CACCTGC 1 cut(s) 196
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PkrI GCNGC 9 cut(s) 67, 142, 145, 300, 442, 502, 676, 769, 778
PpuMI RGGWCCY 2 cut(s) 219, 361
PshAI GACNNNNGTC 2 cut(s) 56, 692
Psp5II RGGWCCY 2 cut(s) 219, 361
Psp6I CCWGG 1 cut(s) 377
PspFI CCCAGC 2 cut(s) 278, 740
PspGI CCWGG 1 cut(s) 377
PspPI GGNCC 6 cut(s) 219, 253, 361, 381, 581, 654
PspPPI RGGWCCY 2 cut(s) 219, 361
PsuI RGATCY 4 cut(s) 489, 586, 599, 731
SatI GCNGC 9 cut(s) 66, 141, 144, 299, 441, 501, 675, 768, 777
Sau3AI GATC 9 cut(s) 433, 454, 474, 489, 586, 593, 599, 621, 731
Sau96I GGNCC 6 cut(s) 219, 253, 361, 381, 581, 654
ScrFI CCNGG 4 cut(s) 119, 379, 447, 604
SduI GDGCHC 2 cut(s) 112, 181
SfaNI GCATC 1 cut(s) 487
SinI GGWCC 5 cut(s) 219, 361, 381, 581, 654
StyD4I CCNGG 4 cut(s) 117, 377, 445, 602
StyI CCWWGG 2 cut(s) 222, 527
TaaI ACNGT 2 cut(s) 343, 373
TaiI ACGT 3 cut(s) 272, 483, 696
TaqI TCGA 1 cut(s) 477
TaqII GACCGA 1 cut(s) 704
TauI GCSGC 4 cut(s) 68, 146, 503, 677
TscAI CASTG 2 cut(s) 163, 178
TseI GCWGC 5 cut(s) 140, 298, 440, 767, 776
TspDTI ATGAA 1 cut(s) 23
TspGWI ACGGA 2 cut(s) 447, 684
TspRI CASTG 2 cut(s) 163, 178
VpaK11BI GGWCC 5 cut(s) 219, 361, 381, 581, 654
XceI RCATGY 1 cut(s) 350
ZraI GACGTC 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.