Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001054

Physical Location & Seq

Genomic Coordinates Reverse (-)

22597248 .. 22597811

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00183520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGGCGTGCCGGCTTTGCCGCGTTGTCCGGGTTTCTGGCCGCCGGATGGGTGCTTTATTGCCGGGGTTTTGGTCCGTAGAGAAGGGGTTGGCTTGAGGTTTTGGCGGGATGGTTGGCGGGGCGTTTTGGATAGCGTCTCCGGGCGTTTTGCGGTTTCTTTCTCTTCGTGCAGATCCGGCATGGGGCTCGAGCGTCCGGGCACGCTCATGGTGGACTTCCATATCCGGCGGTGCTACCACGAGTGGGTGGAGGGATGGAGAGGGGCGGTGTTTGGGCGGTGTTTCCTCTCGGGTCCGGATTCCCGATATGGATCCGGGTTGCGTAGGGATGGGATCGTGGAGTTGGAGGGTGTCCTCCTGTGGTGGTCCGACGATGATGTCGAGCGGCGGTGGTGGAGACCCGACGTCGATGGCGAGTGGTGGGCGTGGTGGTGCGGGCGAGATCTTGGGTCGGGAGTGAATGGAGGCCGACCGCACTTGTGTTCGGGCTCGGGCTTTGTTGCTTGGGCTAGATGGAGTTTGGGCCCGTGTCCGTGGTCGAGCTCGGGTCCCAAAATGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

21.11

Weight (kDa)

8.51

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64500
fragaria_vesca	FvH4_2g10930 FvH4_2g10950 FvH4_2g10950 FvH4_2g10950 FvH4_6g42030
malus_domestica	MD05G1050900.v1.1 MD10G1058300.v1.1 MD12G1201800.v1.1
prunus_persica	Prupe.8G077700_v2.0.a1
pyrus_communis	pycom05g04300 pycom10g04500 pycom12g18820
rosa_chinensis	RchiOBHm_Chr2g0157961 RchiOBHm_Chr6g0269131 RchiOBHm_Chr6g0269161
rosa_laevigata	RLG00000009401 RLG00000013876 RLG00000013877 RLG00000013878 RLG00000013882 RLG00000021038 RLG00000021042
rosa_multiflora	Rmu_sc0000419.1_g000007 Rmu_sc0002120.1_g000003 Rmu_sc0004362.1_g000010 Rmu_ssc0000381.1_g000027
rosa_roxburghii	Rroxscaffold_1G00004920 Rroxscaffold_2G00091820 Rroxscaffold_3G00252830 Rroxscaffold_6G00415270 Rroxscaffold_7G00183520 Rroxscaffold_7G00199000 Rroxscaffold_7G00199020 Rroxscaffold_7G00199180
rosa_rugosa	Rorug02G0464700 Rorug02G0529300 Rorug06G0044900 Rorug06G0044900 Rorug06G0044900 Rorug06G0045000 Rorug06G0045100
rosa_samantha	Rh2AG530300 Rh2BG545000 Rh2CG514700 Rh2DG553200 Rh6AG165700 Rh6BG171100 Rh6BG171300 Rh6CG164700 Rh6CG165000 Rh6DG079900 Rh6DG156200 Rh6DG156600 Rh7AG468700 Rh7BG367400
rosa_wichuraiana	Rw2G043880 Rw6G014240 Rw6G014290 Rw6G014310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	377
AatII	GACGTC	1 cut(s)	408
AccBSI	CCGCTC	1 cut(s)	385
AccII	CGCG	1 cut(s)	22
AccIII	TCCGGA	1 cut(s)	295
AclWI	GGATC	4 cut(s)	168, 306, 319, 341
AcoI	YGGCCR	1 cut(s)	38
AcyI	GRCGYC	1 cut(s)	405
AfiI	CCNNNNNNNGG	3 cut(s)	47, 183, 244
AhdI	GACNNNNNGTC	1 cut(s)	404
AluBI	AGCT	1 cut(s)	543
AluI	AGCT	1 cut(s)	543
Alw21I	GWGCWC	1 cut(s)	545
Alw26I	GTCTC	2 cut(s)	142, 391
AlwI	GGATC	4 cut(s)	168, 306, 319, 341
Ama87I	CYCGRG	4 cut(s)	188, 289, 490, 544
Aor13HI	TCCGGA	1 cut(s)	295
AoxI	GGCC	3 cut(s)	38, 466, 523
ApaI	GGGCCC	1 cut(s)	527
AspS9I	GGNCC	6 cut(s)	73, 293, 366, 523, 524, 548
AsuC2I	CCSGG	5 cut(s)	30, 64, 142, 198, 316
AvaI	CYCGRG	4 cut(s)	188, 289, 490, 544
AvaII	GGWCC	4 cut(s)	73, 293, 366, 548
BaeGI	GKGCMC	2 cut(s)	203, 527
BamHI	GGATCC	1 cut(s)	311
BanII	GRGCYC	4 cut(s)	189, 491, 527, 545
BauI	CACGAG	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	545
BccI	CCATC	6 cut(s)	41, 104, 249, 323, 404, 507
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BcnI	CCSGG	5 cut(s)	30, 64, 142, 198, 316
BcoDI	GTCTC	2 cut(s)	142, 391
BfaI	CTAG	1 cut(s)	510
BglII	AGATCT	1 cut(s)	442
BisI	GCNGC	3 cut(s)	20, 41, 386
BlsI	GCNGC	3 cut(s)	21, 42, 387
Bme1390I	CCNGG	5 cut(s)	30, 64, 142, 198, 316
Bme18I	GGWCC	4 cut(s)	73, 293, 366, 548
BmeRI	GACNNNNNGTC	1 cut(s)	404
BmeT110I	CYCGRG	4 cut(s)	188, 289, 490, 544
BmgT120I	GGNCC	6 cut(s)	73, 293, 366, 523, 524, 548
BmiI	GGNNCC	5 cut(s)	294, 313, 525, 549, 550
BmrFI	CCNGG	5 cut(s)	30, 64, 142, 198, 316
BpuEI	CTTGAG	1 cut(s)	115
BpuMI	CCSGG	5 cut(s)	30, 64, 142, 198, 316
BsaBI	GATNNNNATC	1 cut(s)	310
BsaHI	GRCGYC	1 cut(s)	405
BsaI	GGTCTC	1 cut(s)	391
BsaJI	CCNNGG	2 cut(s)	63, 533
BsaWI	WCCGGW	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 183, 244
Bse118I	RCCGGY	1 cut(s)	10
Bse8I	GATNNNNATC	1 cut(s)	310
BseAI	TCCGGA	1 cut(s)	295
BseDI	CCNNGG	2 cut(s)	63, 533
BseGI	GGATG	4 cut(s)	52, 115, 260, 334
BseJI	GATNNNNATC	1 cut(s)	310
BseLI	CCNNNNNNNGG	3 cut(s)	47, 183, 244
BseSI	GKGCMC	2 cut(s)	203, 527
BsgI	GTGCAG	1 cut(s)	190
Bsh1236I	CGCG	1 cut(s)	22
Bsh1285I	CGRYCG	1 cut(s)	473
BshFI	GGCC	3 cut(s)	40, 468, 525
BsiEI	CGRYCG	1 cut(s)	473
BsiHKAI	GWGCWC	1 cut(s)	545
BsiHKCI	CYCGRG	4 cut(s)	188, 289, 490, 544
BslFI	GGGAC	1 cut(s)	534
BslI	CCNNNNNNNGG	3 cut(s)	47, 183, 244
BsmAI	GTCTC	2 cut(s)	142, 391
BsmBI	CGTCTC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	534
BsnI	GGCC	3 cut(s)	40, 468, 525
Bso31I	GGTCTC	1 cut(s)	391
BsoBI	CYCGRG	4 cut(s)	188, 289, 490, 544
Bsp120I	GGGCCC	1 cut(s)	523
Bsp1286I	GDGCHC	5 cut(s)	189, 203, 491, 527, 545
Bsp13I	TCCGGA	1 cut(s)	295
Bsp143I	GATC	4 cut(s)	173, 311, 333, 442
BspANI	GGCC	3 cut(s)	40, 468, 525
BspEI	TCCGGA	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	22
BspLI	GGNNCC	5 cut(s)	294, 313, 525, 549, 550
BspPI	GGATC	4 cut(s)	168, 306, 319, 341
BspTNI	GGTCTC	1 cut(s)	391
BsrBI	CCGCTC	1 cut(s)	385
BsrFI	RCCGGY	1 cut(s)	10
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	2 cut(s)	63, 533
BssMI	GATC	4 cut(s)	173, 311, 333, 442
BssNI	GRCGYC	1 cut(s)	405
BssSI	CACGAG	1 cut(s)	239
Bst2BI	CACGAG	1 cut(s)	239
Bst6I	CTCTTC	1 cut(s)	169
BstACI	GRCGYC	1 cut(s)	405
BstC8I	GCNNGC	4 cut(s)	8, 12, 203, 437
BstDSI	CCRYGG	1 cut(s)	533
BstF5I	GGATG	4 cut(s)	52, 115, 260, 334
BstFNI	CGCG	1 cut(s)	22
BstKTI	GATC	4 cut(s)	176, 314, 336, 445
BstMAI	GTCTC	2 cut(s)	142, 391
BstMBI	GATC	4 cut(s)	173, 311, 333, 442
BstMCI	CGRYCG	1 cut(s)	473
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 177
BstSCI	CCNGG	5 cut(s)	28, 62, 140, 196, 314
BstSLI	GKGCMC	2 cut(s)	203, 527
BstUI	CGCG	1 cut(s)	22
BstX2I	RGATCY	3 cut(s)	173, 311, 442
BstYI	RGATCY	3 cut(s)	173, 311, 442
BsuRI	GGCC	3 cut(s)	40, 468, 525
BtgI	CCRYGG	1 cut(s)	533
BtsCI	GGATG	4 cut(s)	52, 115, 260, 334
Cac8I	GCNNGC	4 cut(s)	8, 12, 203, 437
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	6 cut(s)	73, 293, 366, 523, 524, 548
CseI	GACGC	2 cut(s)	124, 182
CviAII	CATG	2 cut(s)	181, 208
DpnI	GATC	4 cut(s)	175, 313, 335, 444
DpnII	GATC	4 cut(s)	173, 311, 333, 442
DrdI	GACNNNNNNGTC	1 cut(s)	377
DriI	GACNNNNNGTC	1 cut(s)	404
DseDI	GACNNNNNNGTC	1 cut(s)	377
EaeI	YGGCCR	1 cut(s)	38
Eam1104I	CTCTTC	1 cut(s)	169
Eam1105I	GACNNNNNGTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	169
Ecl136II	GAGCTC	1 cut(s)	543
Eco24I	GRGCYC	4 cut(s)	189, 491, 527, 545
Eco31I	GGTCTC	1 cut(s)	391
Eco47I	GGWCC	4 cut(s)	73, 293, 366, 548
Eco53kI	GAGCTC	1 cut(s)	543
Eco88I	CYCGRG	4 cut(s)	188, 289, 490, 544
EcoICRI	GAGCTC	1 cut(s)	543
EcoO109I	RGGNCCY	1 cut(s)	548
EcoT38I	GRGCYC	4 cut(s)	189, 491, 527, 545
Esp3I	CGTCTC	1 cut(s)	142
FaeI	CATG	2 cut(s)	184, 211
FaiI	YATR	4 cut(s)	182, 209, 222, 309
FaqI	GGGAC	1 cut(s)	534
FatI	CATG	2 cut(s)	180, 207
FauI	CCCGC	3 cut(s)	99, 111, 428
Fnu4HI	GCNGC	3 cut(s)	20, 41, 386
FokI	GGATG	4 cut(s)	59, 122, 267, 341
FriOI	GRGCYC	4 cut(s)	189, 491, 527, 545
Fsp4HI	GCNGC	3 cut(s)	20, 41, 386
FspBI	CTAG	1 cut(s)	510
GluI	GCNGC	3 cut(s)	20, 41, 386
HaeIII	GGCC	3 cut(s)	40, 468, 525
HgaI	GACGC	2 cut(s)	124, 182
Hin1I	GRCGYC	1 cut(s)	405
Hin1II	CATG	2 cut(s)	184, 211
HinfI	GANTC	1 cut(s)	299
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	1 cut(s)	370
Hpy188III	TCNNGA	3 cut(s)	296, 303, 453
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	3 cut(s)	374, 407, 410
HpyAV	CCTTC	1 cut(s)	77
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	1 cut(s)	171
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 177
HpySE526I	ACGT	1 cut(s)	405
Hsp92I	GRCGYC	1 cut(s)	405
Hsp92II	CATG	2 cut(s)	184, 211
KflI	GGGWCCC	1 cut(s)	548
Kpn2I	TCCGGA	1 cut(s)	295
KroI	GCCGGC	1 cut(s)	10
KroNI	GCCGGC	1 cut(s)	12
Kzo9I	GATC	4 cut(s)	173, 311, 333, 442
MaeI	CTAG	1 cut(s)	510
MaeII	ACGT	1 cut(s)	405
MalI	GATC	4 cut(s)	175, 313, 335, 444
MbiI	CCGCTC	1 cut(s)	385
MboI	GATC	4 cut(s)	173, 311, 333, 442
MboII	GAAGA	1 cut(s)	156
MflI	RGATCY	3 cut(s)	173, 311, 442
MhlI	GDGCHC	5 cut(s)	189, 203, 491, 527, 545
MmeI	TCCRAC	2 cut(s)	324, 393
MnlI	CCTC	7 cut(s)	90, 244, 254, 296, 340, 365, 458
MroI	TCCGGA	1 cut(s)	295
MroNI	GCCGGC	1 cut(s)	10
MseI	TTAA	1 cut(s)	562
MslI	CAYNNNNRTG	1 cut(s)	206
MspR9I	CCNGG	5 cut(s)	30, 64, 142, 198, 316
MvnI	CGCG	1 cut(s)	22
MwoI	GCNNNNNNNGC	2 cut(s)	16, 177
NaeI	GCCGGC	1 cut(s)	12
NciI	CCSGG	5 cut(s)	30, 64, 142, 198, 316
NdeII	GATC	4 cut(s)	173, 311, 333, 442
NgoMIV	GCCGGC	1 cut(s)	10
NlaIII	CATG	2 cut(s)	184, 211
NlaIV	GGNNCC	5 cut(s)	294, 313, 525, 549, 550
PaeR7I	CTCGAG	1 cut(s)	188
PcsI	WCGNNNNNNNCGW	2 cut(s)	378, 411
PdiI	GCCGGC	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	299
PkrI	GCNGC	3 cut(s)	21, 42, 387
PpuMI	RGGWCCY	1 cut(s)	548
Psp124BI	GAGCTC	1 cut(s)	545
Psp5II	RGGWCCY	1 cut(s)	548
PspN4I	GGNNCC	5 cut(s)	294, 313, 525, 549, 550
PspOMI	GGGCCC	1 cut(s)	523
PspPI	GGNCC	6 cut(s)	73, 293, 366, 523, 524, 548
PspPPI	RGGWCCY	1 cut(s)	548
PspXI	VCTCGAGB	1 cut(s)	188
PsuI	RGATCY	3 cut(s)	173, 311, 442
RseI	CAYNNNNRTG	1 cut(s)	206
SacI	GAGCTC	1 cut(s)	545
SaqAI	TTAA	1 cut(s)	562
SatI	GCNGC	3 cut(s)	20, 41, 386
Sau3AI	GATC	4 cut(s)	173, 311, 333, 442
Sau96I	GGNCC	6 cut(s)	73, 293, 366, 523, 524, 548
ScrFI	CCNGG	5 cut(s)	30, 64, 142, 198, 316
SduI	GDGCHC	5 cut(s)	189, 203, 491, 527, 545
SetI	ASST	3 cut(s)	101, 408, 545
Sfr274I	CTCGAG	1 cut(s)	188
SinI	GGWCC	4 cut(s)	73, 293, 366, 548
SlaI	CTCGAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	206
SmlI	CTYRAG	2 cut(s)	94, 188
SmoI	CTYRAG	2 cut(s)	94, 188
SspMI	CTAG	1 cut(s)	510
SstI	GAGCTC	1 cut(s)	545
StyD4I	CCNGG	5 cut(s)	28, 62, 140, 196, 314
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	4 cut(s)	189, 381, 408, 539
TauI	GCSGC	3 cut(s)	22, 43, 388
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	1 cut(s)	562
Tru9I	TTAA	1 cut(s)	562
TspGWI	ACGGA	2 cut(s)	65, 522
VpaK11BI	GGWCC	4 cut(s)	73, 293, 366, 548
XhoI	CTCGAG	1 cut(s)	188
XspI	CTAG	1 cut(s)	510
ZraI	GACGTC	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.