RLG00000013876

sphingolipid transporter spinster homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001054
Physical Location & Seq
Forward (+)
43468100 .. 43478163
10064 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013876

Sequence Viewer

Length: 1497 bp
ATGGAGTTACTTGTTGTATTTTGTGTGGTTAACTTGATAAATTATGTGGACCGTGGAGCAATTGCAAGCAATGGTGTGAATGGGAGTCTTGGAACTTGTGCAGAGGGTGGTACATGCACGTCTGGCACCGGCATACAGGGGGATTTTGACTTGAGCAATTTTGAAGATGGATGCCTATCATCTGCTTTTATGGTTGGACTTCTGGTGGCTTCTCCGATTTTTGCTTCATTAGCAAAGAGTGTGAATCCGTTTAGGCTCATTGGAGTTGGCTTGTCAGTTTGGACTTTTGCTGTAGTTGGTTGTGGTCTTTCATTCAACTTCTGGTCTATTACCATCTGCCGCATGCTAGTTGGTGTTGGCGAGGCTTCATTTATTAGTCTTGCAGCTCCGTTCATTGATGACAATGCCCCAGCTGCTCAGAAAACTGTGTGGCTTGCAATATTCTACATGTGCATACCATCTGGATATGCACTTGGTTATGTATATGGTGGGTTGGTGGGAAGTTATACCAATTGGCGTTTTGCATTCTGGGGGGAGGCAATCCTGATGCTTCCGTTTGCTATTCTAGGGTTTGTCATGAAGCCTTTGCAGCTTAAAGGTTTTATGCCTGCTGAATCGAAAGAAGTGCTGACAGGGATGGAGACGGGTGTCTCAGAAGTTCAAGATTCAGGCGTTTCGAATGGTAAAGATGGTTTGTTTCCAGTGGAGGGAGATGTCAAATATTCTACCATACATAAACAGAATGAGGTGAACTTTGCAACAAAAATAAAGGATCAAATTTCAAGGTTTACAAAAGATATGAAGGTGCTTTTGATTGAGAAGGTTTATGTTGTTAATGTTCTAGGTTACATAGCGTACAACTTTGTAATTGGTGCATACTCATATTGGGGGCCTAAGGCTGGTTATAATATATATCATATGACTGATGCAGATTTGATATTTGGAGGTATTACAATTGTGTGTGGAATATTGGGTACCGTAGCAGGAGGCTTGCTTTTGGATTTCATGACCAGCAGTATCCCTAATGCTTTCAAGCTTCTTTCAGCAGCTACGTTTTTTGGGGCAATATTTTGCTTCACTGCCTTCTGCTTCTCAAACATGTATGCTTTCCTAGCTCTATTTGCAGTTGGCGAACTACTTGTCTTTGCAACTCAGGGTCCTGTAAATTACATTTGTCTGCACTGTGTTAAACCCAGTATGAGACCACTAGCTATGGCCATGTCTACTGTTTCTATTCATCTTTTTGGGGATGTGCCTTCCTCACCTCTTGTCGGAGTTCTCCAGGATTGCATCAACAATTGGAGGGTGACTGCTCTTATTCTAACATCTATATTCATTCCAGCGGCTGGTATATGGTTTATAGGAATTTTTCTGCCTAGTGTGGATAGATTTAATGAAGAAAGTGAGAATCAGATATCCACAACTGAAAGGTCAAGCATAACTCCTTTGCTTGAAGGGACGAAGACAGAAACGACTGAATCCGCTGCTGAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1 OATP

Protein Analysis

499

Amino Acids

53.62

Weight (kDa)

4.85

Isoelectric Point (pI)

27.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 44 - 411 1.6e-29 Major Facilitator Superfamily
OATP PF03137 109 - 363 1e-17 Organic Anion Transporter Polypeptide (OATP) family
OATP PF03137 363 - 429 1e-06 Organic Anion Transporter Polypeptide (OATP) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 906
Acc65I GGTACC 1 cut(s) 974
AccB1I GGYRCC 2 cut(s) 125, 974
AccB7I CCANNNNNTGG 1 cut(s) 1346
AccI GTMKAC 1 cut(s) 1223
AciI CCGC 3 cut(s) 340, 1343, 1482
AclWI GGATC 1 cut(s) 780
AcoI YGGCCR 1 cut(s) 1215
AcsI RAATTY 2 cut(s) 777, 1365
AfaI GTAC 3 cut(s) 112, 857, 976
AfiI CCNNNNNNNGG 4 cut(s) 707, 899, 1271, 1346
AflIII ACRYGT 2 cut(s) 447, 1098
AgsI TTSAA 6 cut(s) 164, 316, 662, 783, 1033, 1454
AjiI CACGTC 1 cut(s) 120
AjnI CCWGG 1 cut(s) 1281
AluBI AGCT 7 cut(s) 386, 413, 592, 1036, 1049, 1115, 1211
AluI AGCT 7 cut(s) 386, 413, 592, 1036, 1049, 1115, 1211
Alw26I GTCTC 3 cut(s) 635, 655, 1195
AlwI GGATC 1 cut(s) 780
AlwNI CAGNNNCTG 1 cut(s) 1346
AoxI GGCC 2 cut(s) 890, 1215
ApeKI GCWGC 5 cut(s) 383, 413, 589, 1046, 1484
ApoI RAATTY 2 cut(s) 777, 1365
ArsI GACNNNNNNTTYG 2 cut(s) 1125, 1157
Asp718I GGTACC 1 cut(s) 974
AspS9I GGNCC 3 cut(s) 49, 890, 1157
AsuHPI GGTGA 3 cut(s) 760, 1254, 1318
AsuII TTCGAA 1 cut(s) 677
AvaII GGWCC 2 cut(s) 49, 1157
AxyI CCTNAGG 1 cut(s) 894
BalI TGGCCA 1 cut(s) 1217
BanI GGYRCC 2 cut(s) 125, 974
BbsI GAAGAC 1 cut(s) 1469
BbvI GCAGC 5 cut(s) 395, 400, 601, 1058, 1471
BccI CCATC 5 cut(s) 161, 341, 466, 631, 683
BcgI CGANNNNNNTGC 2 cut(s) 607, 641
BciT130I CCWGG 1 cut(s) 1283
BciVI GTATCC 1 cut(s) 1028
BcoDI GTCTC 3 cut(s) 635, 655, 1195
BfaI CTAG 6 cut(s) 347, 566, 842, 1112, 1208, 1377
BfmI CTRYAG 1 cut(s) 291
BfuI GTATCC 1 cut(s) 1028
BisI GCNGC 7 cut(s) 340, 384, 414, 590, 1047, 1344, 1485
BlsI GCNGC 7 cut(s) 341, 385, 415, 591, 1048, 1345, 1486
Bme1390I CCNGG 1 cut(s) 1283
Bme18I GGWCC 2 cut(s) 49, 1157
BmgBI CACGTC 1 cut(s) 120
BmgT120I GGNCC 3 cut(s) 49, 890, 1157
BmiI GGNNCC 4 cut(s) 127, 891, 976, 1158
BmrFI CCNGG 1 cut(s) 1283
BmrI ACTGGG 1 cut(s) 1188
BmsI GCATC 4 cut(s) 161, 537, 916, 1299
BmuI ACTGGG 1 cut(s) 1188
BoxI GACNNNNGTC 1 cut(s) 647
BpiI GAAGAC 1 cut(s) 1469
BpmI CTGGAG 1 cut(s) 1265
Bpu14I TTCGAA 1 cut(s) 677
BpuEI CTTGAG 1 cut(s) 172
BsaBI GATNNNNATC 1 cut(s) 175
BsaI GGTCTC 1 cut(s) 1195
BsaJI CCNNGG 1 cut(s) 52
Bsc4I CCNNNNNNNGG 4 cut(s) 707, 899, 1271, 1346
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 2 cut(s) 701, 1194
Bse21I CCTNAGG 1 cut(s) 894
Bse3DI GCAATG 1 cut(s) 76
Bse8I GATNNNNATC 1 cut(s) 175
BseBI CCWGG 1 cut(s) 1283
BseDI CCNNGG 1 cut(s) 52
BseGI GGATG 3 cut(s) 176, 642, 1255
BseJI GATNNNNATC 1 cut(s) 175
BseLI CCNNNNNNNGG 4 cut(s) 707, 899, 1271, 1346
BseMI GCAATG 1 cut(s) 76
BseMII CTCAG 3 cut(s) 431, 666, 1166
BseNI ACTGG 2 cut(s) 701, 1194
BseXI GCAGC 5 cut(s) 395, 400, 601, 1058, 1471
BseYI CCCAGC 1 cut(s) 409
BsgI GTGCAG 2 cut(s) 120, 1163
BshFI GGCC 2 cut(s) 892, 1217
BshNI GGYRCC 2 cut(s) 125, 974
BsiSI CCGG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 1471
BslI CCNNNNNNNGG 4 cut(s) 707, 899, 1271, 1346
BsmAI GTCTC 3 cut(s) 635, 655, 1195
BsmBI CGTCTC 1 cut(s) 635
BsmFI GGGAC 1 cut(s) 1471
BsmI GAATGC 1 cut(s) 524
BsnI GGCC 2 cut(s) 892, 1217
Bso31I GGTCTC 1 cut(s) 1195
Bsp119I TTCGAA 1 cut(s) 677
Bsp143I GATC 1 cut(s) 772
BspACI CCGC 3 cut(s) 340, 1343, 1482
BspANI GGCC 2 cut(s) 892, 1217
BspCNI CTCAG 3 cut(s) 430, 665, 1165
BspHI TCATGA 2 cut(s) 576, 1005
BspLI GGNNCC 4 cut(s) 127, 891, 976, 1158
BspPI GGATC 1 cut(s) 780
BspT104I TTCGAA 1 cut(s) 677
BspT107I GGYRCC 2 cut(s) 125, 974
BspTNI GGTCTC 1 cut(s) 1195
BsrDI GCAATG 1 cut(s) 76
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 2 cut(s) 701, 1194
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 1 cut(s) 772
Bst2UI CCWGG 1 cut(s) 1283
Bst4CI ACNGT 5 cut(s) 53, 427, 979, 1184, 1228
BstBI TTCGAA 1 cut(s) 677
BstC8I GCNNGC 5 cut(s) 67, 344, 435, 609, 992
BstDEI CTNAG 4 cut(s) 417, 652, 894, 1152
BstDSI CCRYGG 1 cut(s) 52
BstF5I GGATG 3 cut(s) 176, 642, 1255
BstKTI GATC 1 cut(s) 775
BstMAI GTCTC 3 cut(s) 635, 655, 1195
BstMBI GATC 1 cut(s) 772
BstMWI GCNNNNNNNGC 6 cut(s) 123, 230, 413, 589, 1112, 1121
BstNI CCWGG 1 cut(s) 1283
BstNSI RCATGY 4 cut(s) 117, 346, 451, 1102
BstPAI GACNNNNGTC 1 cut(s) 647
BstSCI CCNGG 1 cut(s) 1281
BstSFI CTRYAG 1 cut(s) 291
BstV1I GCAGC 5 cut(s) 395, 400, 601, 1058, 1471
BstV2I GAAGAC 1 cut(s) 1469
Bsu36I CCTNAGG 1 cut(s) 894
BsuI GTATCC 1 cut(s) 1028
BsuRI GGCC 2 cut(s) 892, 1217
BtgI CCRYGG 1 cut(s) 52
BtrI CACGTC 1 cut(s) 120
BtsCI GGATG 3 cut(s) 176, 642, 1255
BtsI GCAGTG 1 cut(s) 1077
BtsIMutI CAGTG 3 cut(s) 708, 1077, 1180
Cac8I GCNNGC 5 cut(s) 67, 344, 435, 609, 992
CaiI CAGNNNCTG 1 cut(s) 1346
CciI TCATGA 2 cut(s) 576, 1005
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 3 cut(s) 49, 890, 1157
Csp6I GTAC 3 cut(s) 111, 856, 975
CviAII CATG 7 cut(s) 114, 343, 448, 577, 1006, 1099, 1219
CviQI GTAC 3 cut(s) 111, 856, 975
DdeI CTNAG 4 cut(s) 417, 652, 894, 1152
DpnI GATC 1 cut(s) 774
DpnII GATC 1 cut(s) 772
EaeI YGGCCR 1 cut(s) 1215
Eco31I GGTCTC 1 cut(s) 1195
Eco32I GATATC 1 cut(s) 1416
Eco47I GGWCC 2 cut(s) 49, 1157
Eco81I CCTNAGG 1 cut(s) 894
EcoO109I RGGNCCY 2 cut(s) 890, 1157
EcoRII CCWGG 1 cut(s) 1281
EcoRV GATATC 1 cut(s) 1416
Esp3I CGTCTC 1 cut(s) 635
FaeI CATG 7 cut(s) 117, 346, 451, 580, 1009, 1102, 1222
FaqI GGGAC 1 cut(s) 1471
FatI CATG 7 cut(s) 113, 342, 447, 576, 1005, 1098, 1218
FauNDI CATATG 1 cut(s) 918
FblI GTMKAC 1 cut(s) 1223
Fnu4HI GCNGC 7 cut(s) 340, 384, 414, 590, 1047, 1344, 1485
FokI GGATG 3 cut(s) 183, 649, 1262
Fsp4HI GCNGC 7 cut(s) 340, 384, 414, 590, 1047, 1344, 1485
FspBI CTAG 6 cut(s) 347, 566, 842, 1112, 1208, 1377
GluI GCNGC 7 cut(s) 340, 384, 414, 590, 1047, 1344, 1485
GsaI CCCAGC 1 cut(s) 413
GsuI CTGGAG 1 cut(s) 1265
HaeIII GGCC 2 cut(s) 892, 1217
HapII CCGG 1 cut(s) 129
Hin1II CATG 7 cut(s) 117, 346, 451, 580, 1009, 1102, 1222
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HindIII AAGCTT 1 cut(s) 1034
HinfI GANTC 6 cut(s) 85, 244, 614, 665, 1408, 1478
HpaI GTTAAC 1 cut(s) 31
HpaII CCGG 1 cut(s) 129
HphI GGTGA 3 cut(s) 760, 1254, 1318
Hpy166II GTNNAC 5 cut(s) 31, 49, 751, 789, 1224
Hpy188I TCNGA 5 cut(s) 216, 420, 655, 1274, 1413
Hpy188III TCNNGA 5 cut(s) 462, 544, 577, 662, 1006
Hpy8I GTNNAC 5 cut(s) 31, 49, 751, 789, 1224
HpyAV CCTTC 5 cut(s) 796, 814, 1093, 1266, 1448
HpyCH4III ACNGT 5 cut(s) 53, 427, 979, 1184, 1228
HpyCH4IV ACGT 2 cut(s) 119, 1052
HpyF10VI GCNNNNNNNGC 6 cut(s) 123, 230, 413, 589, 1112, 1121
HpyF3I CTNAG 4 cut(s) 417, 652, 894, 1152
HpySE526I ACGT 2 cut(s) 119, 1052
Hsp92II CATG 7 cut(s) 117, 346, 451, 580, 1009, 1102, 1222
KpnI GGTACC 1 cut(s) 978
KspAI GTTAAC 1 cut(s) 31
Kzo9I GATC 1 cut(s) 772
LmnI GCTCC 2 cut(s) 56, 391
Lsp1109I GCAGC 5 cut(s) 395, 400, 601, 1058, 1471
LweI GCATC 4 cut(s) 161, 537, 916, 1299
MaeI CTAG 6 cut(s) 347, 566, 842, 1112, 1208, 1377
MaeII ACGT 2 cut(s) 119, 1052
MaeIII GTNAC 3 cut(s) 6, 845, 1306
MalI GATC 1 cut(s) 774
MboI GATC 1 cut(s) 772
MboII GAAGA 3 cut(s) 176, 1409, 1474
MfeI CAATTG 4 cut(s) 60, 511, 954, 1297
MlsI TGGCCA 1 cut(s) 1217
MluNI TGGCCA 1 cut(s) 1217
MlyI GAGTC 1 cut(s) 94
MmeI TCCRAC 2 cut(s) 175, 1252
Mox20I TGGCCA 1 cut(s) 1217
MscI TGGCCA 1 cut(s) 1217
MseI TTAA 5 cut(s) 30, 594, 834, 1188, 1392
Msp20I TGGCCA 1 cut(s) 1217
MspA1I CMGCKG 3 cut(s) 413, 1343, 1484
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 1283
MunI CAATTG 4 cut(s) 60, 511, 954, 1297
Mva1269I GAATGC 1 cut(s) 524
MvaI CCWGG 1 cut(s) 1283
MwoI GCNNNNNNNGC 6 cut(s) 123, 230, 413, 589, 1112, 1121
NdeI CATATG 1 cut(s) 918
NdeII GATC 1 cut(s) 772
NlaIII CATG 7 cut(s) 117, 346, 451, 580, 1009, 1102, 1222
NlaIV GGNNCC 4 cut(s) 127, 891, 976, 1158
NmuCI GTSAC 1 cut(s) 1306
NspI RCATGY 4 cut(s) 117, 346, 451, 1102
NspV TTCGAA 1 cut(s) 677
PaeI GCATGC 1 cut(s) 346
PagI TCATGA 2 cut(s) 576, 1005
PciI ACATGT 2 cut(s) 447, 1098
PctI GAATGC 1 cut(s) 524
PfeI GAWTC 5 cut(s) 244, 614, 665, 1408, 1478
PflMI CCANNNNNTGG 1 cut(s) 1346
PfoI TCCNGGA 1 cut(s) 1281
PkrI GCNGC 7 cut(s) 341, 385, 415, 591, 1048, 1345, 1486
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
PpuMI RGGWCCY 1 cut(s) 1157
PscI ACATGT 2 cut(s) 447, 1098
PshAI GACNNNNGTC 1 cut(s) 647
PsiI TTATAA 1 cut(s) 906
Psp5II RGGWCCY 1 cut(s) 1157
Psp6I CCWGG 1 cut(s) 1281
PspFI CCCAGC 1 cut(s) 409
PspGI CCWGG 1 cut(s) 1281
PspN4I GGNNCC 4 cut(s) 127, 891, 976, 1158
PspPI GGNCC 3 cut(s) 49, 890, 1157
PspPPI RGGWCCY 1 cut(s) 1157
PstNI CAGNNNCTG 1 cut(s) 1346
PvuII CAGCTG 1 cut(s) 413
RsaI GTAC 3 cut(s) 112, 857, 976
RsaNI GTAC 3 cut(s) 111, 856, 975
SaqAI TTAA 5 cut(s) 30, 594, 834, 1188, 1392
SatI GCNGC 7 cut(s) 340, 384, 414, 590, 1047, 1344, 1485
Sau3AI GATC 1 cut(s) 772
Sau96I GGNCC 3 cut(s) 49, 890, 1157
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 1283
SfaNI GCATC 4 cut(s) 161, 537, 916, 1299
SfcI CTRYAG 1 cut(s) 291
SfuI TTCGAA 1 cut(s) 677
SinI GGWCC 2 cut(s) 49, 1157
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
SphI GCATGC 1 cut(s) 346
SsiI CCGC 3 cut(s) 340, 1343, 1482
SspI AATATT 4 cut(s) 441, 722, 969, 1068
SspMI CTAG 6 cut(s) 347, 566, 842, 1112, 1208, 1377
StyD4I CCNGG 1 cut(s) 1281
TaaI ACNGT 5 cut(s) 53, 427, 979, 1184, 1228
TaiI ACGT 2 cut(s) 122, 1055
TaqI TCGA 2 cut(s) 617, 677
TauI GCSGC 2 cut(s) 342, 1346
TfiI GAWTC 5 cut(s) 244, 614, 665, 1408, 1478
Tru1I TTAA 5 cut(s) 30, 594, 834, 1188, 1392
Tru9I TTAA 5 cut(s) 30, 594, 834, 1188, 1392
TscAI CASTG 3 cut(s) 708, 1084, 1187
TseFI GTSAC 1 cut(s) 1306
TseI GCWGC 5 cut(s) 383, 413, 589, 1046, 1484
Tsp45I GTSAC 1 cut(s) 1306
TspGWI ACGGA 3 cut(s) 237, 378, 543
TspRI CASTG 3 cut(s) 708, 1084, 1187
Van91I CCANNNNNTGG 1 cut(s) 1346
VpaK11BI GGWCC 2 cut(s) 49, 1157
XapI RAATTY 2 cut(s) 777, 1365
XceI RCATGY 4 cut(s) 117, 346, 451, 1102
XmiI GTMKAC 1 cut(s) 1223
XspI CTAG 6 cut(s) 347, 566, 842, 1112, 1208, 1377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.