AT1G24430

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000852
Physical Location & Seq
Reverse (-)
8658003 .. 8659514
1512 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G24430.1

Sequence Viewer

Length: 1308 bp
ATGGGGCTTGAGATCACGGTAACTTCTCAGGAACTCGTCAAGCCCTCTCCTCGAAACCTTAATCATCCTCCATGCCATCATCATCTCTCTTTCCTTGATCAGCTTGCTCCTCCCATTTTCATGCCTTTCCTTTTCTTTTACCATAACAAGACTAATCTATCAGACAAAGAACGAAGTGATCACATCAAGAGTTCTTTGTCTGAAATATTGAATCTCTATTACCCCTTGGCAGGACGCATCAAGAACTCGGGTGATGTTGTTGTGTGCAACGATGTGGGTGTGTCTTTCGTCGAAGCCAAAGCCGATTGCAACATGTCACAGATTCTAGAAAACCCAAATCCTAACGAACTTAACAAGCTTCATCCATTCGAATTCCATGAAGTGAGTGACGTGCCTCTCACGGTACAGCTCACTTTCTTTGAATGTGGCGGCTTAGCACTCGGAATAGGCCTTTCTCATAAACTCTGTGATGCACTGTCTGGTCTCATCTTCGTCAACAGTTGGGCAGCTTTTGCTCGTGGCCAGACTGATGAAATCATTACTCCTTCTTTTGATCTCGCCAAGATGTTTCCTCCGTGCGACATAGAAAACTTAAACATGGCTACAGGTATCACGAAGGAGAACATAGTAACCAGACGCTTCGTGTTCTTGAGATCTTCTGTTGAGTCTTTAAGAGAAAGATTCAGCGGAAACAAGAAGATCCGCGCGACACGTGTTGAGGTCTTATCGGTATTCATATGGAGCCGTTTCATGGCTTCAACAAACCATGATGATAAAACCGGAAAGATCTATACACTGATTCATCCAGTGAACTTGCGTAGACAAGCAGATCCAGATATACCAGACAACATGTTCGGGAACATCATGAGGTTCTCTGTTACTGTCCCTATGATGATAATCAATGAAAATGATGAAGAAAAGGCTTCTCTTGTGGATCAGATGAGAGAGGAGATTAGAAAGATAGACGCAGTTTACGTGAAGAAACTTCAAGAAGATAACAGAGGACACCTAGAGTTTCTAAACAAACAAGCTTCAGGTTTTGTCAATGGAGAGATTGTATCGTTTAGCTTCACGAGCCTCTGCAAATTTCCGGTGTATGAAGCAGATTTCGGATGGGGGAAACCTTTGTGGGTTGCCTCTGCAAGAATGAGCTACAAAAATCTTGTAGCTTTCATTGATACTAAGGAAGGTGATGGAATTGAAGCTTGGATCAACCTTGACCAGAACGATATGTCTAGATTCGAAGCCGATGAGGAGTTGCTTCGCTATGTCTCTTCAAACCCAAGTGTGATGGTCTCTGTATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

435

Amino Acids

49.29

Weight (kDa)

5.53

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 4 - 420 5.6e-80 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 820
AccII CGCG 2 cut(s) 705, 707
AciI CCGC 3 cut(s) 429, 687, 703
AclWI GGATC 4 cut(s) 694, 824, 942, 1217
AcoI YGGCCR 1 cut(s) 520
AcsI RAATTY 2 cut(s) 371, 1085
AcuI CTGAAG 1 cut(s) 1017
AcvI CACGTG 1 cut(s) 713
AfaI GTAC 1 cut(s) 405
AfiI CCNNNNNNNGG 2 cut(s) 230, 751
AflIII ACRYGT 4 cut(s) 312, 710, 712, 849
AgsI TTSAA 6 cut(s) 211, 422, 759, 989, 1202, 1278
AjiI CACGTC 1 cut(s) 391
AjuI GAANNNNNNNTTGG 2 cut(s) 1189, 1221
AluBI AGCT 9 cut(s) 103, 358, 409, 509, 1031, 1068, 1152, 1169, 1205
AluI AGCT 9 cut(s) 103, 358, 409, 509, 1031, 1068, 1152, 1169, 1205
Alw26I GTCTC 3 cut(s) 488, 1276, 1300
AlwI GGATC 4 cut(s) 694, 824, 942, 1217
Ama87I CYCGRG 1 cut(s) 247
AoxI GGCC 2 cut(s) 448, 520
ApeKI GCWGC 1 cut(s) 506
ApoI RAATTY 2 cut(s) 371, 1085
ArsI GACNNNNNNTTYG 2 cut(s) 836, 868
AspLEI GCGC 1 cut(s) 707
AsuHPI GGTGA 2 cut(s) 263, 1202
AsuII TTCGAA 2 cut(s) 369, 1242
AvaI CYCGRG 1 cut(s) 247
BalI TGGCCA 1 cut(s) 522
BauI CACGAG 2 cut(s) 516, 1072
BbrPI CACGTG 1 cut(s) 713
BbvI GCAGC 1 cut(s) 518
BccI CCATC 4 cut(s) 84, 1107, 1187, 1285
BceAI ACGGC 1 cut(s) 729
BclI TGATCA 2 cut(s) 97, 178
BcoDI GTCTC 3 cut(s) 488, 1276, 1300
BfaI CTAG 3 cut(s) 326, 1010, 1236
BfmI CTRYAG 1 cut(s) 603
BglII AGATCT 2 cut(s) 653, 786
BisI GCNGC 2 cut(s) 430, 507
BlpI GCTNAGC 1 cut(s) 433
BlsI GCNGC 2 cut(s) 431, 508
BmeT110I CYCGRG 1 cut(s) 247
BmgBI CACGTC 1 cut(s) 391
BmiI GGNNCC 1 cut(s) 743
BmsI GCATC 2 cut(s) 246, 460
Bpu1102I GCTNAGC 1 cut(s) 433
Bpu14I TTCGAA 2 cut(s) 369, 1242
BpuEI CTTGAG 2 cut(s) 29, 670
BsaAI YACGTR 2 cut(s) 713, 976
BsaBI GATNNNNATC 1 cut(s) 896
BsaI GGTCTC 2 cut(s) 488, 1300
BsaJI CCNNGG 1 cut(s) 225
BsaWI WCCGGW 2 cut(s) 779, 1090
BsaXI ACNNNNNCTCC 2 cut(s) 1041, 1071
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 751
Bse1I ACTGG 1 cut(s) 806
Bse8I GATNNNNATC 1 cut(s) 896
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 4 cut(s) 64, 361, 802, 1118
BseJI GATNNNNATC 1 cut(s) 896
BseLI CCNNNNNNNGG 2 cut(s) 230, 751
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 1 cut(s) 806
BseRI GAGGAG 4 cut(s) 39, 99, 962, 1268
BseXI GCAGC 1 cut(s) 518
Bsh1236I CGCG 2 cut(s) 705, 707
BshFI GGCC 2 cut(s) 450, 522
BsiHKCI CYCGRG 1 cut(s) 247
BsiSI CCGG 2 cut(s) 780, 1091
BslFI GGGAC 1 cut(s) 869
BslI CCNNNNNNNGG 2 cut(s) 230, 751
BsmAI GTCTC 3 cut(s) 488, 1276, 1300
BsmFI GGGAC 1 cut(s) 869
BsnI GGCC 2 cut(s) 450, 522
Bso31I GGTCTC 2 cut(s) 488, 1300
BsoBI CYCGRG 1 cut(s) 247
Bsp119I TTCGAA 2 cut(s) 369, 1242
Bsp1720I GCTNAGC 1 cut(s) 433
BspACI CCGC 3 cut(s) 429, 687, 703
BspANI GGCC 2 cut(s) 450, 522
BspCNI CTCAG 1 cut(s) 40
BspFNI CGCG 2 cut(s) 705, 707
BspHI TCATGA 1 cut(s) 864
BspLI GGNNCC 1 cut(s) 743
BspPI GGATC 4 cut(s) 694, 824, 942, 1217
BspT104I TTCGAA 2 cut(s) 369, 1242
BspTNI GGTCTC 2 cut(s) 488, 1300
BsrI ACTGG 1 cut(s) 806
BssECI CCNNGG 1 cut(s) 225
BssSI CACGAG 2 cut(s) 516, 1072
BssT1I CCWWGG 1 cut(s) 225
Bst2BI CACGAG 2 cut(s) 516, 1072
Bst4CI ACNGT 5 cut(s) 19, 403, 477, 500, 883
Bst6I CTCTTC 1 cut(s) 1279
BstAPI GCANNNNNTGC 1 cut(s) 512
BstBAI YACGTR 2 cut(s) 713, 976
BstBI TTCGAA 2 cut(s) 369, 1242
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 3 cut(s) 27, 433, 1182
BstF5I GGATG 4 cut(s) 64, 361, 802, 1118
BstFNI CGCG 2 cut(s) 705, 707
BstHHI GCGC 1 cut(s) 707
BstMAI GTCTC 3 cut(s) 488, 1276, 1300
BstMWI GCNNNNNNNGC 2 cut(s) 512, 1074
BstNSI RCATGY 2 cut(s) 316, 853
BstSFI CTRYAG 1 cut(s) 603
BstUI CGCG 2 cut(s) 705, 707
BstV1I GCAGC 1 cut(s) 518
BstX2I RGATCY 4 cut(s) 653, 699, 786, 829
BstYI RGATCY 4 cut(s) 653, 699, 786, 829
BsuRI GGCC 2 cut(s) 450, 522
BtrI CACGTC 1 cut(s) 391
BtsCI GGATG 4 cut(s) 64, 361, 802, 1118
BtsIMutI CAGTG 3 cut(s) 473, 794, 813
Cac8I GCNNGC 1 cut(s) 105
CciI TCATGA 1 cut(s) 864
CfoI GCGC 1 cut(s) 707
CseI GACGC 3 cut(s) 243, 645, 974
Csp6I GTAC 1 cut(s) 404
CviAII CATG 9 cut(s) 72, 121, 313, 377, 598, 751, 767, 850, 865
CviQI GTAC 1 cut(s) 404
DdeI CTNAG 3 cut(s) 27, 433, 1182
EaeI YGGCCR 1 cut(s) 520
Eam1104I CTCTTC 1 cut(s) 1279
EarI CTCTTC 1 cut(s) 1279
Eco130I CCWWGG 1 cut(s) 225
Eco147I AGGCCT 1 cut(s) 450
Eco31I GGTCTC 2 cut(s) 488, 1300
Eco57I CTGAAG 1 cut(s) 1017
Eco72I CACGTG 1 cut(s) 713
Eco88I CYCGRG 1 cut(s) 247
EcoRI GAATTC 1 cut(s) 371
EcoT14I CCWWGG 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 9 cut(s) 75, 124, 316, 380, 601, 754, 770, 853, 868
FaqI GGGAC 1 cut(s) 869
FatI CATG 9 cut(s) 71, 120, 312, 376, 597, 750, 766, 849, 864
FauNDI CATATG 1 cut(s) 737
FbaI TGATCA 2 cut(s) 97, 178
FblI GTMKAC 1 cut(s) 820
Fnu4HI GCNGC 2 cut(s) 430, 507
FokI GGATG 4 cut(s) 51, 348, 789, 1125
Fsp4HI GCNGC 2 cut(s) 430, 507
FspBI CTAG 3 cut(s) 326, 1010, 1236
GlaI GCGC 1 cut(s) 706
GluI GCNGC 2 cut(s) 430, 507
HaeIII GGCC 2 cut(s) 450, 522
HapII CCGG 2 cut(s) 780, 1091
HgaI GACGC 3 cut(s) 243, 645, 974
HhaI GCGC 1 cut(s) 707
Hin1II CATG 9 cut(s) 75, 124, 316, 380, 601, 754, 770, 853, 868
Hin6I GCGC 1 cut(s) 705
HinP1I GCGC 1 cut(s) 705
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HindIII AAGCTT 3 cut(s) 356, 1029, 1203
HinfI GANTC 6 cut(s) 211, 322, 665, 681, 799, 1239
HpaII CCGG 2 cut(s) 780, 1091
HphI GGTGA 2 cut(s) 263, 1202
Hpy166II GTNNAC 4 cut(s) 496, 811, 821, 973
Hpy188I TCNGA 5 cut(s) 163, 202, 443, 939, 1112
Hpy8I GTNNAC 4 cut(s) 496, 811, 821, 973
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 3 cut(s) 555, 610, 1181
HpyCH4III ACNGT 5 cut(s) 19, 403, 477, 500, 883
HpyCH4IV ACGT 3 cut(s) 390, 712, 975
HpyCH4V TGCA 5 cut(s) 267, 309, 473, 1083, 1142
HpyF10VI GCNNNNNNNGC 2 cut(s) 512, 1074
HpyF3I CTNAG 3 cut(s) 27, 433, 1182
HpySE526I ACGT 3 cut(s) 390, 712, 975
Hsp92II CATG 9 cut(s) 75, 124, 316, 380, 601, 754, 770, 853, 868
HspAI GCGC 1 cut(s) 705
Ksp22I TGATCA 2 cut(s) 97, 178
LmnI GCTCC 2 cut(s) 112, 741
Lsp1109I GCAGC 1 cut(s) 518
LweI GCATC 2 cut(s) 246, 460
MaeI CTAG 3 cut(s) 326, 1010, 1236
MaeII ACGT 3 cut(s) 390, 712, 975
MaeIII GTNAC 5 cut(s) 19, 315, 386, 628, 877
MboII GAAGA 7 cut(s) 481, 648, 709, 926, 991, 1004, 1266
MflI RGATCY 4 cut(s) 653, 699, 786, 829
MlsI TGGCCA 1 cut(s) 522
MluCI AATT 3 cut(s) 371, 1085, 1197
MluNI TGGCCA 1 cut(s) 522
MlyI GAGTC 1 cut(s) 674
Mox20I TGGCCA 1 cut(s) 522
MscI TGGCCA 1 cut(s) 522
MseI TTAA 4 cut(s) 60, 351, 593, 671
MslI CAYNNNNRTG 1 cut(s) 119
Msp20I TGGCCA 1 cut(s) 522
MspA1I CMGCKG 1 cut(s) 687
MspI CCGG 2 cut(s) 780, 1091
MvnI CGCG 2 cut(s) 705, 707
MwoI GCNNNNNNNGC 2 cut(s) 512, 1074
NdeI CATATG 1 cut(s) 737
NlaIII CATG 9 cut(s) 75, 124, 316, 380, 601, 754, 770, 853, 868
NlaIV GGNNCC 1 cut(s) 743
NmuCI GTSAC 2 cut(s) 315, 386
NspI RCATGY 2 cut(s) 316, 853
NspV TTCGAA 2 cut(s) 369, 1242
PagI TCATGA 1 cut(s) 864
PceI AGGCCT 1 cut(s) 450
PciI ACATGT 2 cut(s) 312, 849
PcsI WCGNNNNNNNCGW 1 cut(s) 972
PfeI GAWTC 5 cut(s) 211, 322, 681, 799, 1239
PkrI GCNGC 2 cut(s) 431, 508
PleI GAGTC 1 cut(s) 673
PmaCI CACGTG 1 cut(s) 713
PmlI CACGTG 1 cut(s) 713
PpsI GAGTC 1 cut(s) 673
Ppu21I YACGTR 2 cut(s) 713, 976
PscI ACATGT 2 cut(s) 312, 849
PspCI CACGTG 1 cut(s) 713
PspN4I GGNNCC 1 cut(s) 743
PsuI RGATCY 4 cut(s) 653, 699, 786, 829
RsaI GTAC 1 cut(s) 405
RsaNI GTAC 1 cut(s) 404
RseI CAYNNNNRTG 1 cut(s) 119
SaqAI TTAA 4 cut(s) 60, 351, 593, 671
SatI GCNGC 2 cut(s) 430, 507
SchI GAGTC 1 cut(s) 674
SfaNI GCATC 2 cut(s) 246, 460
SfcI CTRYAG 1 cut(s) 603
SfuI TTCGAA 2 cut(s) 369, 1242
SmiMI CAYNNNNRTG 1 cut(s) 119
SmlI CTYRAG 2 cut(s) 8, 649
SmoI CTYRAG 2 cut(s) 8, 649
Sse9I AATT 3 cut(s) 371, 1085, 1197
SseBI AGGCCT 1 cut(s) 450
SsiI CCGC 3 cut(s) 429, 687, 703
SspI AATATT 1 cut(s) 207
SspMI CTAG 3 cut(s) 326, 1010, 1236
StuI AGGCCT 1 cut(s) 450
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 5 cut(s) 19, 403, 477, 500, 883
TaiI ACGT 3 cut(s) 393, 715, 978
TaqI TCGA 4 cut(s) 52, 291, 369, 1242
TasI AATT 3 cut(s) 371, 1085, 1197
TauI GCSGC 1 cut(s) 432
TfiI GAWTC 5 cut(s) 211, 322, 681, 799, 1239
Tru1I TTAA 4 cut(s) 60, 351, 593, 671
Tru9I TTAA 4 cut(s) 60, 351, 593, 671
TscAI CASTG 3 cut(s) 480, 801, 813
TseFI GTSAC 2 cut(s) 315, 386
TseI GCWGC 1 cut(s) 506
Tsp45I GTSAC 2 cut(s) 315, 386
TspGWI ACGGA 1 cut(s) 564
TspRI CASTG 3 cut(s) 480, 801, 813
XapI RAATTY 2 cut(s) 371, 1085
XbaI TCTAGA 2 cut(s) 325, 1235
XceI RCATGY 2 cut(s) 316, 853
XmiI GTMKAC 1 cut(s) 820
XspI CTAG 3 cut(s) 326, 1010, 1236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.