Rh4BG316900

Vinorine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000852
Physical Location & Seq
Reverse (-)
48434471 .. 48436273
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG316900.1

Sequence Viewer

Length: 771 bp
ATGAAGTTTCAAGTGGAGGTTCTCTCAACAGAGACAATCACACCCTCATCTCCAACCCCTGACCACCTCCGCCACCACAAGCTCTCTTACCTCGACCAAATCCAGCCCCCAATCTTCATGCCCATGGTCCTCTTCTACCCGAAAGAACCCGACCACAACGACCTGGGCCTCATTTCCATCCACGAACAGCGATGCAGCAAAATCAAGAAGGCCTTATCCGACACCTTAGTCAAGTTCTACCCACTAGCCGGAAGAGTCCACGGAACCCAATACGTCGATTGCAACGACGAAGGAGCCTACTACGTCGAAGCCAAGACCGACTGCAAAATCTCTGACATCATCAACAACCCAAACCCCAAGGACTTCAACAAGTTCCTCCCTTTCGAGCTAGACGCTGCTCATGAGCTTCCCGTGTGCTTCCAGGTCACCTTCTTCGCTTGCGGCGGCATGAGTATCGCCATGGGGATGTCCCACAAGGTCGGGGACGCCCTCTCCTACTTCACGTTCCTCAATGGCCTGGCCGCTGAGTCTCGTGGGGAGGGCAACGATATTCACCCTCCCGAGTTCGTCTCAGACAAGTACTTCCCCCAAAAGGACTTGTCCGGATTCTACCAACACCGCAGCGGAATCATAAAGCAAAACATCTCAACAAAACGCTTCGTCTTCGACACTCCAATGGTTCAGGCCATCCGAGCCAAATGCATCGACATCATATCTGATATATACATGTTGACATTTTTGCACAACGGCCATTTGAAAGCTTTAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

256

Amino Acids

28.94

Weight (kDa)

6.29

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 3 - 207 5.2e-45 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AccIII TCCGGA 1 cut(s) 602
AciI CCGC 6 cut(s) 70, 441, 444, 522, 619, 624
AcoI YGGCCR 2 cut(s) 519, 748
AcyI GRCGYC 1 cut(s) 486
AfaI GTAC 1 cut(s) 581
AfiI CCNNNNNNNGG 2 cut(s) 248, 592
AflIII ACRYGT 1 cut(s) 726
AgsI TTSAA 3 cut(s) 11, 367, 757
AjnI CCWGG 3 cut(s) 162, 420, 516
AluBI AGCT 4 cut(s) 82, 388, 406, 761
AluI AGCT 4 cut(s) 82, 388, 406, 761
Alw26I GTCTC 3 cut(s) 26, 534, 574
Ama87I CYCGRG 1 cut(s) 560
Aor13HI TCCGGA 1 cut(s) 602
AoxI GGCC 6 cut(s) 166, 210, 514, 519, 684, 748
ApeKI GCWGC 3 cut(s) 195, 395, 621
AspS9I GGNCC 2 cut(s) 127, 166
AsuHPI GGTGA 2 cut(s) 418, 545
AvaI CYCGRG 1 cut(s) 560
AvaII GGWCC 1 cut(s) 127
BauI CACGAG 1 cut(s) 531
BbsI GAAGAC 1 cut(s) 655
BbvI GCAGC 3 cut(s) 207, 382, 633
BccI CCATC 2 cut(s) 185, 695
BceAI ACGGC 1 cut(s) 763
BcgI CGANNNNNNTGC 4 cut(s) 436, 470, 681, 715
BciT130I CCWGG 3 cut(s) 164, 422, 518
BcoDI GTCTC 3 cut(s) 26, 534, 574
BfaI CTAG 2 cut(s) 245, 389
BisI GCNGC 6 cut(s) 196, 396, 442, 445, 522, 622
BlsI GCNGC 6 cut(s) 197, 397, 443, 446, 523, 623
BmcAI AGTACT 1 cut(s) 581
Bme1390I CCNGG 3 cut(s) 164, 422, 518
Bme18I GGWCC 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 560
BmgT120I GGNCC 2 cut(s) 127, 166
BmiI GGNNCC 2 cut(s) 265, 295
BmrFI CCNGG 3 cut(s) 164, 422, 518
BmsI GCATC 2 cut(s) 182, 711
BpiI GAAGAC 1 cut(s) 655
BplI GAGNNNNNCTC 4 cut(s) 8, 40, 554, 586
BsaHI GRCGYC 1 cut(s) 486
BsaJI CCNNGG 5 cut(s) 123, 163, 259, 357, 459
BsaWI WCCGGW 1 cut(s) 602
BsaXI ACNNNNNCTCC 2 cut(s) 476, 506
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 592
BseAI TCCGGA 1 cut(s) 602
BseBI CCWGG 3 cut(s) 164, 422, 518
BseDI CCNNGG 5 cut(s) 123, 163, 259, 357, 459
BseGI GGATG 3 cut(s) 177, 471, 687
BseLI CCNNNNNNNGG 2 cut(s) 248, 592
BseMII CTCAG 2 cut(s) 516, 585
BseXI GCAGC 3 cut(s) 207, 382, 633
BshFI GGCC 6 cut(s) 168, 212, 516, 521, 686, 750
BsiHKCI CYCGRG 1 cut(s) 560
BsiSI CCGG 2 cut(s) 249, 603
BslFI GGGAC 2 cut(s) 454, 497
BslI CCNNNNNNNGG 2 cut(s) 248, 592
BsmAI GTCTC 3 cut(s) 26, 534, 574
BsmBI CGTCTC 1 cut(s) 574
BsmFI GGGAC 2 cut(s) 454, 497
BsnI GGCC 6 cut(s) 168, 212, 516, 521, 686, 750
BsoBI CYCGRG 1 cut(s) 560
Bsp13I TCCGGA 1 cut(s) 602
Bsp19I CCATGG 2 cut(s) 123, 459
BspACI CCGC 6 cut(s) 70, 441, 444, 522, 619, 624
BspANI GGCC 6 cut(s) 168, 212, 516, 521, 686, 750
BspCNI CTCAG 2 cut(s) 517, 584
BspEI TCCGGA 1 cut(s) 602
BspHI TCATGA 1 cut(s) 400
BspLI GGNNCC 2 cut(s) 265, 295
BssECI CCNNGG 5 cut(s) 123, 163, 259, 357, 459
BssNI GRCGYC 1 cut(s) 486
BssSI CACGAG 1 cut(s) 531
BssT1I CCWWGG 3 cut(s) 123, 357, 459
Bst2BI CACGAG 1 cut(s) 531
Bst2UI CCWGG 3 cut(s) 164, 422, 518
Bst6I CTCTTC 2 cut(s) 137, 247
BstACI GRCGYC 1 cut(s) 486
BstC8I GCNNGC 1 cut(s) 439
BstDEI CTNAG 3 cut(s) 226, 525, 571
BstDSI CCRYGG 3 cut(s) 123, 259, 459
BstEII GGTNACC 1 cut(s) 424
BstF5I GGATG 3 cut(s) 177, 471, 687
BstMAI GTCTC 3 cut(s) 26, 534, 574
BstMWI GCNNNNNNNGC 1 cut(s) 692
BstNI CCWGG 3 cut(s) 164, 422, 518
BstNSI RCATGY 1 cut(s) 730
BstPI GGTNACC 1 cut(s) 424
BstSCI CCNGG 3 cut(s) 162, 420, 516
BstV1I GCAGC 3 cut(s) 207, 382, 633
BstV2I GAAGAC 1 cut(s) 655
BsuRI GGCC 6 cut(s) 168, 212, 516, 521, 686, 750
BtgI CCRYGG 3 cut(s) 123, 259, 459
BtgZI GCGATG 1 cut(s) 205
BtsCI GGATG 3 cut(s) 177, 471, 687
Cac8I GCNNGC 1 cut(s) 439
CciI TCATGA 1 cut(s) 400
Cfr13I GGNCC 2 cut(s) 127, 166
CseI GACGC 2 cut(s) 401, 494
Csp6I GTAC 1 cut(s) 580
CviAII CATG 6 cut(s) 118, 124, 401, 448, 460, 727
CviQI GTAC 1 cut(s) 580
DdeI CTNAG 3 cut(s) 226, 525, 571
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
EaeI YGGCCR 2 cut(s) 519, 748
Eam1104I CTCTTC 2 cut(s) 137, 247
EarI CTCTTC 2 cut(s) 137, 247
EciI GGCGGA 1 cut(s) 59
Eco130I CCWWGG 3 cut(s) 123, 357, 459
Eco147I AGGCCT 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 127
Eco88I CYCGRG 1 cut(s) 560
Eco91I GGTNACC 1 cut(s) 424
EcoO65I GGTNACC 1 cut(s) 424
EcoRII CCWGG 3 cut(s) 162, 420, 516
EcoT14I CCWWGG 3 cut(s) 123, 357, 459
EcoT22I ATGCAT 1 cut(s) 704
ErhI CCWWGG 3 cut(s) 123, 357, 459
Esp3I CGTCTC 1 cut(s) 574
FaeI CATG 6 cut(s) 121, 127, 404, 451, 463, 730
FalI AAGNNNNNCTT 2 cut(s) 197, 229
FaqI GGGAC 2 cut(s) 454, 497
FatI CATG 6 cut(s) 117, 123, 400, 447, 459, 726
Fnu4HI GCNGC 6 cut(s) 196, 396, 442, 445, 522, 622
FokI GGATG 3 cut(s) 164, 478, 674
Fsp4HI GCNGC 6 cut(s) 196, 396, 442, 445, 522, 622
FspBI CTAG 2 cut(s) 245, 389
GluI GCNGC 6 cut(s) 196, 396, 442, 445, 522, 622
HaeIII GGCC 6 cut(s) 168, 212, 516, 521, 686, 750
HapII CCGG 2 cut(s) 249, 603
HgaI GACGC 2 cut(s) 401, 494
Hin1I GRCGYC 1 cut(s) 486
Hin1II CATG 6 cut(s) 121, 127, 404, 451, 463, 730
HincII GTYRAC 1 cut(s) 732
HindII GTYRAC 1 cut(s) 732
HindIII AAGCTT 1 cut(s) 759
HinfI GANTC 4 cut(s) 255, 527, 606, 627
HpaII CCGG 2 cut(s) 249, 603
HphI GGTGA 2 cut(s) 418, 545
Hpy166II GTNNAC 2 cut(s) 259, 732
Hpy188I TCNGA 5 cut(s) 220, 334, 574, 692, 718
Hpy188III TCNNGA 4 cut(s) 205, 401, 560, 603
Hpy8I GTNNAC 2 cut(s) 259, 732
Hpy99I CGWCG 3 cut(s) 278, 290, 308
HpyAV CCTTC 3 cut(s) 202, 284, 439
HpyCH4IV ACGT 3 cut(s) 273, 303, 503
HpyCH4V TGCA 5 cut(s) 195, 282, 324, 702, 742
HpyF10VI GCNNNNNNNGC 1 cut(s) 692
HpyF3I CTNAG 3 cut(s) 226, 525, 571
HpySE526I ACGT 3 cut(s) 273, 303, 503
Hsp92I GRCGYC 1 cut(s) 486
Hsp92II CATG 6 cut(s) 121, 127, 404, 451, 463, 730
Kpn2I TCCGGA 1 cut(s) 602
LmnI GCTCC 1 cut(s) 293
Lsp1109I GCAGC 3 cut(s) 207, 382, 633
LweI GCATC 2 cut(s) 182, 711
MaeI CTAG 2 cut(s) 245, 389
MaeII ACGT 3 cut(s) 273, 303, 503
MaeIII GTNAC 1 cut(s) 424
MboII GAAGA 5 cut(s) 106, 124, 264, 424, 655
MlyI GAGTC 2 cut(s) 264, 536
MmeI TCCRAC 2 cut(s) 77, 243
Mph1103I ATGCAT 1 cut(s) 704
MroI TCCGGA 1 cut(s) 602
MslI CAYNNNNRTG 3 cut(s) 122, 464, 674
MspA1I CMGCKG 2 cut(s) 524, 624
MspI CCGG 2 cut(s) 249, 603
MspR9I CCNGG 3 cut(s) 164, 422, 518
MvaI CCWGG 3 cut(s) 164, 422, 518
MwoI GCNNNNNNNGC 1 cut(s) 692
NcoI CCATGG 2 cut(s) 123, 459
NlaIII CATG 6 cut(s) 121, 127, 404, 451, 463, 730
NlaIV GGNNCC 2 cut(s) 265, 295
NmuCI GTSAC 1 cut(s) 424
NsiI ATGCAT 1 cut(s) 704
NspI RCATGY 1 cut(s) 730
PagI TCATGA 1 cut(s) 400
PceI AGGCCT 1 cut(s) 212
PciI ACATGT 1 cut(s) 726
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PfeI GAWTC 2 cut(s) 606, 627
PkrI GCNGC 6 cut(s) 197, 397, 443, 446, 523, 623
PleI GAGTC 2 cut(s) 263, 535
PpsI GAGTC 2 cut(s) 263, 535
PscI ACATGT 1 cut(s) 726
Psp6I CCWGG 3 cut(s) 162, 420, 516
PspEI GGTNACC 1 cut(s) 424
PspGI CCWGG 3 cut(s) 162, 420, 516
PspN4I GGNNCC 2 cut(s) 265, 295
PspPI GGNCC 2 cut(s) 127, 166
RsaI GTAC 1 cut(s) 581
RsaNI GTAC 1 cut(s) 580
RseI CAYNNNNRTG 3 cut(s) 122, 464, 674
SatI GCNGC 6 cut(s) 196, 396, 442, 445, 522, 622
Sau96I GGNCC 2 cut(s) 127, 166
ScaI AGTACT 1 cut(s) 581
SchI GAGTC 2 cut(s) 264, 536
ScrFI CCNGG 3 cut(s) 164, 422, 518
SfaNI GCATC 2 cut(s) 182, 711
SinI GGWCC 1 cut(s) 127
SmiMI CAYNNNNRTG 3 cut(s) 122, 464, 674
SseBI AGGCCT 1 cut(s) 212
SsiI CCGC 6 cut(s) 70, 441, 444, 522, 619, 624
SspMI CTAG 2 cut(s) 245, 389
StuI AGGCCT 1 cut(s) 212
StyD4I CCNGG 3 cut(s) 162, 420, 516
StyI CCWWGG 3 cut(s) 123, 357, 459
TaiI ACGT 3 cut(s) 276, 306, 506
TaqI TCGA 6 cut(s) 93, 276, 306, 384, 666, 705
TaqII GACCGA 1 cut(s) 332
TatI WGTACW 1 cut(s) 579
TauI GCSGC 3 cut(s) 444, 447, 524
TfiI GAWTC 2 cut(s) 606, 627
TseFI GTSAC 1 cut(s) 424
TseI GCWGC 3 cut(s) 195, 395, 621
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 2 cut(s) 17, 106
TspGWI ACGGA 1 cut(s) 276
VpaK11BI GGWCC 1 cut(s) 127
XceI RCATGY 1 cut(s) 730
XspI CTAG 2 cut(s) 245, 389
ZrmI AGTACT 1 cut(s) 581
Zsp2I ATGCAT 1 cut(s) 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.