Rw1G011150

Vinorine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000852
Physical Location & Seq
Forward (+)
25250550 .. 25251857
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G011150.1

Sequence Viewer

Length: 1101 bp
ATGAAGGGTGAGGTGATTGAGAGGGATTGCATCAAGCCTTCTTCTCCAACCCCAAACCACCTTCGCAAACATGAGCTTTCATTTCTCGATCAAGTCGCCCCTCCCATTTTCATGCCCATATGCTCCTATTCTACCCTGCTACTAATTATGGTCACGGTAATTACAGTCGACAAAGGCGTTGTACTCCTTTCGTACGAGTCAACTGCCTACTTTCAGATGACAACATCCCAACCGGACCCAAACCAACTCAACAAGCTACTCCCATGTGAGTTGGAATGTGTTGTCGACTTTGTTCTTGCAGTCCAAGCCAACATCTTTGACTGTGGCGGCATGACTATTGGAGTGTGCATCTCGCACAAAATCGCCGACGCCTTGTCACTAGTCATGTTTCTAAACCCTTGGGCTTCCGTTTCCCGACGAGATAATTGTAATTACACAGCTCCAGCTTTTGACTTGGCTACGTTCTTCCCGCCGAGATCCATATCTGGGTTCAAACCAGGGACTGGAATCGCAAGAGACAAAATCGTTACTAAACGATTCGTTTTCAGCACCTCTACCGTTGCTTCTCTCCGAACAAAATACACGACATCTGCAACTGACAGACGCCCTACTCGTATCGAGGCTCTGTCAGCATTTGTATGGAGCCGTTTCTTGGCTTCCATGCAAGGAAAGCCCAACTCGGACATGGTTTACAAAGTTCTCCACGCATGCAAGCATCATTTCGGAAACATGAGCCGGTTCGCGAAGGCGACGACGTCGTTTGAGGAGGGCGAGGAGGAGTGTTATCGGTTTGTGGGACAAATGAGAGATGCCATTAAGACCGTCGACCGGGAGTACATGAGGAAGATTATAGAAGGCACCGGCCACTTTCTGAAAGGTGAAGTGGTGTCATTTAGCTTCACTATTCTCTGTAGGTTTCCATTGTATGAGACTGACTTCGGGTGGGGGAAGTCGATAATCGATCTGGTTTGTTTCACGGATTCTGGGTCCAGTGGTGGGATCCAAGCGTGGGTTAATTTGAAGGAAGAAGACATGGCTAAGTTCCAAGAGGATGAGCAGTTACGCGCACTCACTTATCCAGCTAGAGATGCTAAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

366

Amino Acids

41.09

Weight (kDa)

7.52

Isoelectric Point (pI)

34.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 79 - 353 6.1e-33 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 758
AccB1I GGYRCC 1 cut(s) 857
AccB7I CCANNNNNTGG 1 cut(s) 503
AccI GTMKAC 3 cut(s) 168, 285, 825
AccII CGCG 2 cut(s) 743, 1065
AciI CCGC 2 cut(s) 327, 470
AclWI GGATC 3 cut(s) 471, 994, 1007
AcoI YGGCCR 1 cut(s) 862
AcyI GRCGYC 3 cut(s) 369, 604, 755
AfaI GTAC 3 cut(s) 183, 194, 836
AfiI CCNNNNNNNGG 6 cut(s) 486, 503, 652, 828, 996, 1009
AgsI TTSAA 2 cut(s) 493, 1021
AhdI GACNNNNNGTC 1 cut(s) 373
AhlI ACTAGT 1 cut(s) 379
AjnI CCWGG 1 cut(s) 496
AluBI AGCT 6 cut(s) 76, 256, 440, 446, 897, 1082
AluI AGCT 6 cut(s) 76, 256, 440, 446, 897, 1082
Alw26I GTCTC 2 cut(s) 510, 923
AlwI GGATC 3 cut(s) 471, 994, 1007
AlwNI CAGNNNCTG 1 cut(s) 503
AoxI GGCC 1 cut(s) 862
AspLEI GCGC 1 cut(s) 1067
AspS9I GGNCC 2 cut(s) 235, 987
AsuC2I CCSGG 1 cut(s) 830
AsuHPI GGTGA 3 cut(s) 20, 25, 890
AvaII GGWCC 2 cut(s) 235, 987
BamHI GGATCC 1 cut(s) 999
BanI GGYRCC 1 cut(s) 857
BbsI GAAGAC 1 cut(s) 1035
BceAI ACGGC 1 cut(s) 630
BcgI CGANNNNNNTGC 2 cut(s) 185, 219
BciT130I CCWGG 1 cut(s) 498
BcnI CCSGG 1 cut(s) 830
BcoDI GTCTC 2 cut(s) 510, 923
BcuI ACTAGT 1 cut(s) 379
BfaI CTAG 2 cut(s) 380, 1083
BfmI CTRYAG 1 cut(s) 910
BisI GCNGC 1 cut(s) 328
BlsI GCNGC 1 cut(s) 329
Bme1390I CCNGG 2 cut(s) 498, 830
Bme18I GGWCC 2 cut(s) 235, 987
BmeRI GACNNNNNGTC 1 cut(s) 373
BmgT120I GGNCC 2 cut(s) 235, 987
BmiI GGNNCC 5 cut(s) 237, 644, 859, 988, 1001
BmrFI CCNGG 2 cut(s) 498, 830
BmsI GCATC 5 cut(s) 39, 357, 724, 799, 1078
BpiI GAAGAC 1 cut(s) 1035
BpmI CTGGAG 1 cut(s) 426
BpuMI CCSGG 1 cut(s) 830
Bsa29I ATCGAT 1 cut(s) 960
BsaBI GATNNNNATC 1 cut(s) 481
BsaHI GRCGYC 3 cut(s) 369, 604, 755
BsaJI CCNNGG 2 cut(s) 398, 497
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 6 cut(s) 486, 503, 652, 828, 996, 1009
Bse118I RCCGGY 2 cut(s) 735, 860
Bse1I ACTGG 2 cut(s) 508, 990
Bse8I GATNNNNATC 1 cut(s) 481
BseBI CCWGG 1 cut(s) 498
BseCI ATCGAT 1 cut(s) 960
BseDI CCNNGG 2 cut(s) 398, 497
BseGI GGATG 2 cut(s) 224, 1057
BseJI GATNNNNATC 1 cut(s) 481
BseLI CCNNNNNNNGG 6 cut(s) 486, 503, 652, 828, 996, 1009
BseNI ACTGG 2 cut(s) 508, 990
BseRI GAGGAG 3 cut(s) 779, 788, 791
Bsh1236I CGCG 2 cut(s) 743, 1065
Bsh1285I CGRYCG 1 cut(s) 829
BshFI GGCC 1 cut(s) 864
BshNI GGYRCC 1 cut(s) 857
BshVI ATCGAT 1 cut(s) 960
BsiEI CGRYCG 1 cut(s) 829
BsiSI CCGG 4 cut(s) 233, 736, 829, 861
BsiWI CGTACG 1 cut(s) 192
BslFI GGGAC 2 cut(s) 514, 810
BslI CCNNNNNNNGG 6 cut(s) 486, 503, 652, 828, 996, 1009
BsmAI GTCTC 2 cut(s) 510, 923
BsmFI GGGAC 2 cut(s) 514, 810
BsnI GGCC 1 cut(s) 864
Bsp143I GATC 4 cut(s) 88, 476, 961, 999
Bsp68I TCGCGA 1 cut(s) 743
BspACI CCGC 2 cut(s) 327, 470
BspANI GGCC 1 cut(s) 864
BspDI ATCGAT 1 cut(s) 960
BspFNI CGCG 2 cut(s) 743, 1065
BspLI GGNNCC 5 cut(s) 237, 644, 859, 988, 1001
BspPI GGATC 3 cut(s) 471, 994, 1007
BspT107I GGYRCC 1 cut(s) 857
BsrFI RCCGGY 2 cut(s) 735, 860
BsrI ACTGG 2 cut(s) 508, 990
BssAI RCCGGY 2 cut(s) 735, 860
BssECI CCNNGG 2 cut(s) 398, 497
BssMI GATC 4 cut(s) 88, 476, 961, 999
BssNI GRCGYC 3 cut(s) 369, 604, 755
BssT1I CCWWGG 1 cut(s) 398
Bst2UI CCWGG 1 cut(s) 498
Bst4CI ACNGT 5 cut(s) 157, 166, 323, 559, 823
BstACI GRCGYC 3 cut(s) 369, 604, 755
BstC8I GCNNGC 2 cut(s) 709, 713
BstDEI CTNAG 1 cut(s) 1038
BstF5I GGATG 2 cut(s) 224, 1057
BstFNI CGCG 2 cut(s) 743, 1065
BstHHI GCGC 1 cut(s) 1067
BstKTI GATC 4 cut(s) 91, 479, 964, 1002
BstMAI GTCTC 2 cut(s) 510, 923
BstMBI GATC 4 cut(s) 88, 476, 961, 999
BstMCI CGRYCG 1 cut(s) 829
BstMWI GCNNNNNNNGC 4 cut(s) 305, 629, 670, 1088
BstNI CCWGG 1 cut(s) 498
BstNSI RCATGY 1 cut(s) 711
BstSCI CCNGG 2 cut(s) 496, 828
BstSFI CTRYAG 1 cut(s) 910
BstUI CGCG 2 cut(s) 743, 1065
BstV2I GAAGAC 1 cut(s) 1035
BstX2I RGATCY 2 cut(s) 476, 999
BstYI RGATCY 2 cut(s) 476, 999
Bsu15I ATCGAT 1 cut(s) 960
BsuRI GGCC 1 cut(s) 864
BsuTUI ATCGAT 1 cut(s) 960
BtsCI GGATG 2 cut(s) 224, 1057
BtsIMutI CAGTG 1 cut(s) 997
BtuMI TCGCGA 1 cut(s) 743
Cac8I GCNNGC 2 cut(s) 709, 713
CaiI CAGNNNCTG 1 cut(s) 503
CfoI GCGC 1 cut(s) 1067
Cfr10I RCCGGY 2 cut(s) 735, 860
Cfr13I GGNCC 2 cut(s) 235, 987
ClaI ATCGAT 1 cut(s) 960
CseI GACGC 2 cut(s) 377, 612
Csp6I GTAC 3 cut(s) 182, 193, 835
CviQI GTAC 3 cut(s) 182, 193, 835
DdeI CTNAG 1 cut(s) 1038
DpnI GATC 4 cut(s) 90, 478, 963, 1001
DpnII GATC 4 cut(s) 88, 476, 961, 999
DriI GACNNNNNGTC 1 cut(s) 373
EaeI YGGCCR 1 cut(s) 862
Eam1105I GACNNNNNGTC 1 cut(s) 373
Eco130I CCWWGG 1 cut(s) 398
Eco47I GGWCC 2 cut(s) 235, 987
EcoRII CCWGG 1 cut(s) 496
EcoT14I CCWWGG 1 cut(s) 398
ErhI CCWWGG 1 cut(s) 398
FaqI GGGAC 2 cut(s) 514, 810
FauI CCCGC 1 cut(s) 477
FauNDI CATATG 1 cut(s) 119
FblI GTMKAC 3 cut(s) 168, 285, 825
Fnu4HI GCNGC 1 cut(s) 328
FokI GGATG 2 cut(s) 211, 1064
Fsp4HI GCNGC 1 cut(s) 328
FspBI CTAG 2 cut(s) 380, 1083
GlaI GCGC 1 cut(s) 1066
GluI GCNGC 1 cut(s) 328
GsuI CTGGAG 1 cut(s) 426
HaeIII GGCC 1 cut(s) 864
HapII CCGG 4 cut(s) 233, 736, 829, 861
HgaI GACGC 2 cut(s) 377, 612
HhaI GCGC 1 cut(s) 1067
Hin1I GRCGYC 3 cut(s) 369, 604, 755
Hin6I GCGC 1 cut(s) 1065
HinP1I GCGC 1 cut(s) 1065
HincII GTYRAC 4 cut(s) 169, 201, 286, 826
HindII GTYRAC 4 cut(s) 169, 201, 286, 826
HinfI GANTC 4 cut(s) 197, 507, 537, 980
HpaII CCGG 4 cut(s) 233, 736, 829, 861
HphI GGTGA 3 cut(s) 20, 25, 890
Hpy166II GTNNAC 5 cut(s) 169, 201, 286, 691, 826
Hpy188I TCNGA 5 cut(s) 216, 572, 682, 725, 873
Hpy188III TCNNGA 3 cut(s) 86, 414, 742
Hpy8I GTNNAC 5 cut(s) 169, 201, 286, 691, 826
Hpy99I CGWCG 6 cut(s) 371, 420, 754, 757, 760, 827
HpyAV CCTTC 5 cut(s) 48, 71, 739, 848, 1015
HpyCH4III ACNGT 5 cut(s) 157, 166, 323, 559, 823
HpyCH4IV ACGT 2 cut(s) 461, 755
HpyCH4V TGCA 6 cut(s) 30, 299, 348, 593, 664, 711
HpyF10VI GCNNNNNNNGC 4 cut(s) 305, 629, 670, 1088
HpyF3I CTNAG 1 cut(s) 1038
HpySE526I ACGT 2 cut(s) 461, 755
Hsp92I GRCGYC 3 cut(s) 369, 604, 755
HspAI GCGC 1 cut(s) 1065
Kzo9I GATC 4 cut(s) 88, 476, 961, 999
LmnI GCTCC 3 cut(s) 128, 445, 642
LweI GCATC 5 cut(s) 39, 357, 724, 799, 1078
MaeI CTAG 2 cut(s) 380, 1083
MaeII ACGT 2 cut(s) 461, 755
MaeIII GTNAC 4 cut(s) 151, 375, 526, 1059
MalI GATC 4 cut(s) 90, 478, 963, 1001
MboI GATC 4 cut(s) 88, 476, 961, 999
MboII GAAGA 5 cut(s) 33, 457, 856, 1037, 1040
MflI RGATCY 2 cut(s) 476, 999
MluCI AATT 5 cut(s) 144, 159, 424, 430, 1015
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 2 cut(s) 71, 252
MseI TTAA 2 cut(s) 816, 1014
MslI CAYNNNNRTG 2 cut(s) 110, 637
MspI CCGG 4 cut(s) 233, 736, 829, 861
MspR9I CCNGG 2 cut(s) 498, 830
MvaI CCWGG 1 cut(s) 498
MvnI CGCG 2 cut(s) 743, 1065
MwoI GCNNNNNNNGC 4 cut(s) 305, 629, 670, 1088
NciI CCSGG 1 cut(s) 830
NdeI CATATG 1 cut(s) 119
NdeII GATC 4 cut(s) 88, 476, 961, 999
NlaIV GGNNCC 5 cut(s) 237, 644, 859, 988, 1001
NmeAIII GCCGAG 1 cut(s) 498
NmuCI GTSAC 2 cut(s) 151, 375
NruI TCGCGA 1 cut(s) 743
NspI RCATGY 1 cut(s) 711
PaeI GCATGC 1 cut(s) 711
PcsI WCGNNNNNNNCGW 2 cut(s) 174, 610
PfeI GAWTC 3 cut(s) 507, 537, 980
Pfl23II CGTACG 1 cut(s) 192
PflFI GACNNNGTC 1 cut(s) 754
PflMI CCANNNNNTGG 1 cut(s) 503
PkrI GCNGC 1 cut(s) 329
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
Psp6I CCWGG 1 cut(s) 496
PspGI CCWGG 1 cut(s) 496
PspLI CGTACG 1 cut(s) 192
PspN4I GGNNCC 5 cut(s) 237, 644, 859, 988, 1001
PspPI GGNCC 2 cut(s) 235, 987
PstNI CAGNNNCTG 1 cut(s) 503
PsuI RGATCY 2 cut(s) 476, 999
PsyI GACNNNGTC 1 cut(s) 754
RruI TCGCGA 1 cut(s) 743
RsaI GTAC 3 cut(s) 183, 194, 836
RsaNI GTAC 3 cut(s) 182, 193, 835
RseI CAYNNNNRTG 2 cut(s) 110, 637
SalI GTCGAC 3 cut(s) 167, 284, 824
SaqAI TTAA 2 cut(s) 816, 1014
SatI GCNGC 1 cut(s) 328
Sau3AI GATC 4 cut(s) 88, 476, 961, 999
Sau96I GGNCC 2 cut(s) 235, 987
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 2 cut(s) 498, 830
SfaNI GCATC 5 cut(s) 39, 357, 724, 799, 1078
SfcI CTRYAG 1 cut(s) 910
SinI GGWCC 2 cut(s) 235, 987
SmiMI CAYNNNNRTG 2 cut(s) 110, 637
SpeI ACTAGT 1 cut(s) 379
SphI GCATGC 1 cut(s) 711
Sse9I AATT 5 cut(s) 144, 159, 424, 430, 1015
SsiI CCGC 2 cut(s) 327, 470
SspMI CTAG 2 cut(s) 380, 1083
StyD4I CCNGG 2 cut(s) 496, 828
StyI CCWWGG 1 cut(s) 398
TaaI ACNGT 5 cut(s) 157, 166, 323, 559, 823
TaiI ACGT 2 cut(s) 464, 758
TaqI TCGA 7 cut(s) 87, 168, 285, 618, 825, 953, 960
TasI AATT 5 cut(s) 144, 159, 424, 430, 1015
TatI WGTACW 2 cut(s) 181, 834
TauI GCSGC 1 cut(s) 330
TfiI GAWTC 3 cut(s) 507, 537, 980
Tru1I TTAA 2 cut(s) 816, 1014
Tru9I TTAA 2 cut(s) 816, 1014
TscAI CASTG 1 cut(s) 997
TseFI GTSAC 2 cut(s) 151, 375
Tsp45I GTSAC 2 cut(s) 151, 375
TspDTI ATGAA 3 cut(s) 17, 69, 100
TspGWI ACGGA 2 cut(s) 397, 992
TspRI CASTG 1 cut(s) 997
Tth111I GACNNNGTC 1 cut(s) 754
Van91I CCANNNNNTGG 1 cut(s) 503
VpaK11BI GGWCC 2 cut(s) 235, 987
XceI RCATGY 1 cut(s) 711
XcmI CCANNNNNNNNNTGG 1 cut(s) 682
XmiI GTMKAC 3 cut(s) 168, 285, 825
XspI CTAG 2 cut(s) 380, 1083
ZraI GACGTC 1 cut(s) 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.