Rh5BG195700

Vinorine synthase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
21692282 .. 21695579
3298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG195700.1

Sequence Viewer

Length: 306 bp
ATGGAGCCACCACTTCCGGAGAACACATTCGGAAACGTGACCCGAACCGCCATTGCTGTGCCTCCTTTACCCGTTGACCCGAAAGACGGGACGCTTCATGGAGTGGTTAATCACGTTAGGGAGGCCATCAAGCAAGTAGACAAAGAGTACATAAAGAAACTGCAAGAGGGTGACGGACACTTGAGCTTCTTGAGGAGCCGAAATAGAGCTTTGTTTGGACTCTACTTCACAAGGATGAATTATTGTTGCTTGATGAGTGTTTCTCTTATAGGGACTGAGGTCAACTCAGTCTTAAGTTTGGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

101

Amino Acids

11.23

Weight (kDa)

7.82

Isoelectric Point (pI)

38.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 138
AccIII TCCGGA 1 cut(s) 16
AciI CCGC 1 cut(s) 48
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 86
AflII CTTAAG 1 cut(s) 292
AluBI AGCT 2 cut(s) 186, 209
AluI AGCT 2 cut(s) 186, 209
Aor13HI TCCGGA 1 cut(s) 16
AoxI GGCC 1 cut(s) 123
Asp700I GAANNNNTTC 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 182
BccI CCATC 1 cut(s) 134
BfrI CTTAAG 1 cut(s) 292
BmiI GGNNCC 2 cut(s) 6, 197
BoxI GACNNNNGTC 1 cut(s) 278
BplI GAGNNNNNCTC 4 cut(s) 247, 279, 269, 301
BpuEI CTTGAG 2 cut(s) 202, 211
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse3DI GCAATG 1 cut(s) 51
BseAI TCCGGA 1 cut(s) 16
BseGI GGATG 1 cut(s) 240
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMI GCAATG 1 cut(s) 51
BseMII CTCAG 2 cut(s) 267, 300
BseRI GAGGAG 1 cut(s) 208
BshFI GGCC 1 cut(s) 125
BsiSI CCGG 1 cut(s) 17
BslFI GGGAC 2 cut(s) 103, 286
BslI CCNNNNNNNGG 1 cut(s) 86
BsmFI GGGAC 2 cut(s) 103, 286
BsnI GGCC 1 cut(s) 125
Bsp13I TCCGGA 1 cut(s) 16
BspACI CCGC 1 cut(s) 48
BspANI GGCC 1 cut(s) 125
BspCNI CTCAG 2 cut(s) 268, 299
BspEI TCCGGA 1 cut(s) 16
BspLI GGNNCC 2 cut(s) 6, 197
BspTI CTTAAG 1 cut(s) 292
BsrDI GCAATG 1 cut(s) 51
BstAFI CTTAAG 1 cut(s) 292
BstDEI CTNAG 2 cut(s) 276, 286
BstF5I GGATG 1 cut(s) 240
BstPAI GACNNNNGTC 1 cut(s) 278
BsuRI GGCC 1 cut(s) 125
BtsCI GGATG 1 cut(s) 240
CseI GACGC 1 cut(s) 100
Csp6I GTAC 1 cut(s) 148
CviAII CATG 1 cut(s) 98
CviJI RGCY 5 cut(s) 7, 125, 186, 198, 209
CviKI_1 RGCY 5 cut(s) 7, 125, 186, 198, 209
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 2 cut(s) 276, 286
FaeI CATG 1 cut(s) 101
FaiI YATR 3 cut(s) 99, 152, 269
FaqI GGGAC 2 cut(s) 103, 286
FatI CATG 1 cut(s) 97
FblI GTMKAC 1 cut(s) 138
FokI GGATG 1 cut(s) 247
HaeIII GGCC 1 cut(s) 125
HapII CCGG 1 cut(s) 17
HgaI GACGC 1 cut(s) 100
Hin1II CATG 1 cut(s) 101
HincII GTYRAC 2 cut(s) 76, 283
HindII GTYRAC 2 cut(s) 76, 283
HinfI GANTC 1 cut(s) 219
HpaII CCGG 1 cut(s) 17
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 3 cut(s) 76, 139, 283
Hpy188I TCNGA 1 cut(s) 32
Hpy188III TCNNGA 2 cut(s) 17, 190
Hpy8I GTNNAC 3 cut(s) 76, 139, 283
HpyCH4IV ACGT 2 cut(s) 36, 114
HpyCH4V TGCA 1 cut(s) 163
HpyF3I CTNAG 2 cut(s) 276, 286
HpySE526I ACGT 2 cut(s) 36, 114
Hsp92II CATG 1 cut(s) 101
Kpn2I TCCGGA 1 cut(s) 16
LmnI GCTCC 2 cut(s) 4, 195
LpnPI CCDG 1 cut(s) 30
MaeII ACGT 2 cut(s) 36, 114
MaeIII GTNAC 2 cut(s) 37, 170
MluCI AATT 1 cut(s) 238
MlyI GAGTC 1 cut(s) 213
MnlI CCTC 5 cut(s) 72, 115, 160, 186, 271
MroI TCCGGA 1 cut(s) 16
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 2 cut(s) 108, 293
MslI CAYNNNNRTG 2 cut(s) 56, 233
MspCI CTTAAG 1 cut(s) 292
MspI CCGG 1 cut(s) 17
NlaIII CATG 1 cut(s) 101
NlaIV GGNNCC 2 cut(s) 6, 197
NmuCI GTSAC 2 cut(s) 37, 170
PdmI GAANNNNTTC 1 cut(s) 26
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
PshAI GACNNNNGTC 1 cut(s) 278
PspN4I GGNNCC 2 cut(s) 6, 197
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
RseI CAYNNNNRTG 2 cut(s) 56, 233
SaqAI TTAA 2 cut(s) 108, 293
SchI GAGTC 1 cut(s) 213
SetI ASST 5 cut(s) 39, 117, 188, 211, 282
SmiMI CAYNNNNRTG 2 cut(s) 56, 233
SmlI CTYRAG 3 cut(s) 181, 190, 292
SmoI CTYRAG 3 cut(s) 181, 190, 292
Sse9I AATT 1 cut(s) 238
SsiI CCGC 1 cut(s) 48
TaiI ACGT 2 cut(s) 39, 117
TasI AATT 1 cut(s) 238
TatI WGTACW 1 cut(s) 147
Tru1I TTAA 2 cut(s) 108, 293
Tru9I TTAA 2 cut(s) 108, 293
TseFI GTSAC 2 cut(s) 37, 170
Tsp45I GTSAC 2 cut(s) 37, 170
TspDTI ATGAA 2 cut(s) 86, 251
TspGWI ACGGA 1 cut(s) 189
Vha464I CTTAAG 1 cut(s) 292
XmiI GTMKAC 1 cut(s) 138
XmnI GAANNNNTTC 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.