Rorug01G0110900

Vinorine synthase-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
19788060 .. 19788614
555 bp
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UTR
Exon/CDS
Intron
Rorug01G0110900.1

Sequence Viewer

Length: 555 bp
ATGCATTTTGATATCAAACCCCAAAATGTTTTGCTAGACCACAATTTCACACCAAAGCTTTCTGACTTTGGTTTGGCCAAGCTGTGCTCCAAGGATCAGAGTATAGTGTCTATGACCACAGCTAGGGGGACAATGGGATACATTGCACCTGAAGTGTTCTCTAGGAACTTTGGCAATGTATCTTATAAGTCAGATGTCTATAGTTTTGGAATGCTACTACTTGAGATGGTAGGAGGGAGAAGCAGTATTGGTGCAACCACAATGAACGCCAACGAAGTTTACTACCTTGAAGCGATATATAATCTTGTAGAACGTGGAGAAGGCCTAACAATCCATATGGTAGAAGAAGGAGATGCTAAAATTCAAAGAAAACTTGCAATTATAGGGCTCTGGTGCATCCAGTGGCACCCAGTGGATCGTCCTCCCATGAAAGTCGTGGTTCAAATGTTGGATGGAGAAGAAAACTTGACCATTCCTCCAAATCCTTTTGGTTCTACAAGTGTTCCTGCAAGAACTTTAAACCGACAGTTGGAAACAATTGTCGAGTTAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

184

Amino Acids

20.51

Weight (kDa)

5.55

Isoelectric Point (pI)

28.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 1 - 148 4.7e-22 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 2 - 149 9.6e-17 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 186
AccB1I GGYRCC 1 cut(s) 405
AclWI GGATC 2 cut(s) 102, 423
AcoI YGGCCR 1 cut(s) 75
AcsI RAATTY 1 cut(s) 360
AcuI CTGAAG 1 cut(s) 171
AdeI CACNNNGTG 1 cut(s) 412
AfiI CCNNNNNNNGG 2 cut(s) 123, 529
AgsI TTSAA 3 cut(s) 290, 365, 443
AluBI AGCT 3 cut(s) 58, 82, 122
AluI AGCT 3 cut(s) 58, 82, 122
Alw21I GWGCWC 1 cut(s) 89
AlwI GGATC 2 cut(s) 102, 423
AoxI GGCC 2 cut(s) 75, 322
ApoI RAATTY 1 cut(s) 360
BalI TGGCCA 1 cut(s) 77
BanI GGYRCC 1 cut(s) 405
BanII GRGCYC 1 cut(s) 390
Bbv12I GWGCWC 1 cut(s) 89
BccI CCATC 2 cut(s) 220, 446
BciVI GTATCC 1 cut(s) 131
BfaI CTAG 3 cut(s) 35, 123, 162
BfmI CTRYAG 1 cut(s) 199
BfuI GTATCC 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 407
BmrI ACTGGG 1 cut(s) 404
BmsI GCATC 2 cut(s) 343, 405
BmuI ACTGGG 1 cut(s) 404
BpuEI CTTGAG 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 90
BsaXI ACNNNNNCTCC 4 cut(s) 229, 259, 460, 490
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 529
Bse1I ACTGG 2 cut(s) 400, 410
Bse3DI GCAATG 2 cut(s) 141, 181
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 2 cut(s) 396, 457
BseLI CCNNNNNNNGG 2 cut(s) 123, 529
BseMI GCAATG 2 cut(s) 141, 181
BseNI ACTGG 2 cut(s) 400, 410
BshFI GGCC 2 cut(s) 77, 324
BshNI GGYRCC 1 cut(s) 405
BsiHKAI GWGCWC 1 cut(s) 89
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 2 cut(s) 123, 529
BsmFI GGGAC 1 cut(s) 142
BsmI GAATGC 1 cut(s) 216
BsnI GGCC 2 cut(s) 77, 324
Bsp1286I GDGCHC 2 cut(s) 89, 390
Bsp143I GATC 2 cut(s) 94, 415
BspANI GGCC 2 cut(s) 77, 324
BspLI GGNNCC 1 cut(s) 407
BspPI GGATC 2 cut(s) 102, 423
BspT107I GGYRCC 1 cut(s) 405
BsrDI GCAATG 2 cut(s) 141, 181
BsrI ACTGG 2 cut(s) 400, 410
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 2 cut(s) 94, 415
BssT1I CCWWGG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 528
BstF5I GGATG 2 cut(s) 396, 457
BstKTI GATC 2 cut(s) 97, 418
BstMBI GATC 2 cut(s) 94, 415
BstSFI CTRYAG 1 cut(s) 199
BsuI GTATCC 1 cut(s) 131
BsuRI GGCC 2 cut(s) 77, 324
BtsCI GGATG 2 cut(s) 396, 457
BtsIMutI CAGTG 2 cut(s) 407, 417
CviAII CATG 1 cut(s) 427
CviJI RGCY 6 cut(s) 58, 77, 82, 122, 324, 388
CviKI_1 RGCY 6 cut(s) 58, 77, 82, 122, 324, 388
DpnI GATC 2 cut(s) 96, 417
DpnII GATC 2 cut(s) 94, 415
DraI TTTAAA 1 cut(s) 519
DraIII CACNNNGTG 1 cut(s) 412
EaeI YGGCCR 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 90
Eco147I AGGCCT 1 cut(s) 324
Eco24I GRGCYC 1 cut(s) 390
Eco32I GATATC 1 cut(s) 13
Eco57I CTGAAG 1 cut(s) 171
EcoRV GATATC 1 cut(s) 13
EcoT14I CCWWGG 1 cut(s) 90
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 1 cut(s) 430
FaqI GGGAC 1 cut(s) 142
FatI CATG 1 cut(s) 426
FauNDI CATATG 1 cut(s) 336
FokI GGATG 2 cut(s) 383, 464
FriOI GRGCYC 1 cut(s) 390
FspBI CTAG 3 cut(s) 35, 123, 162
HaeIII GGCC 2 cut(s) 77, 324
Hin1II CATG 1 cut(s) 430
HindIII AAGCTT 1 cut(s) 56
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 3 cut(s) 64, 99, 193
Hpy8I GTNNAC 1 cut(s) 280
HpyAV CCTTC 2 cut(s) 314, 341
HpyCH4III ACNGT 1 cut(s) 528
HpyCH4IV ACGT 1 cut(s) 313
HpyCH4V TGCA 6 cut(s) 4, 146, 254, 377, 396, 509
HpySE526I ACGT 1 cut(s) 313
Hsp92II CATG 1 cut(s) 430
Kzo9I GATC 2 cut(s) 94, 415
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 5 cut(s) 162, 376, 413, 423, 519
LweI GCATC 2 cut(s) 343, 405
MaeI CTAG 3 cut(s) 35, 123, 162
MaeII ACGT 1 cut(s) 313
MalI GATC 2 cut(s) 96, 417
MboI GATC 2 cut(s) 94, 415
MboII GAAGA 2 cut(s) 356, 470
MfeI CAATTG 1 cut(s) 537
MhlI GDGCHC 2 cut(s) 89, 390
MlsI TGGCCA 1 cut(s) 77
MluCI AATT 4 cut(s) 43, 360, 378, 537
MluNI TGGCCA 1 cut(s) 77
MmeI TCCRAC 2 cut(s) 429, 510
MnlI CCTC 3 cut(s) 227, 432, 486
Mox20I TGGCCA 1 cut(s) 77
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 77
MseI TTAA 1 cut(s) 518
Msp20I TGGCCA 1 cut(s) 77
MunI CAATTG 1 cut(s) 537
Mva1269I GAATGC 1 cut(s) 216
NdeI CATATG 1 cut(s) 336
NdeII GATC 2 cut(s) 94, 415
NlaIII CATG 1 cut(s) 430
NlaIV GGNNCC 1 cut(s) 407
NsiI ATGCAT 1 cut(s) 6
PceI AGGCCT 1 cut(s) 324
PctI GAATGC 1 cut(s) 216
PsiI TTATAA 1 cut(s) 186
PspN4I GGNNCC 1 cut(s) 407
SaqAI TTAA 1 cut(s) 518
Sau3AI GATC 2 cut(s) 94, 415
SduI GDGCHC 2 cut(s) 89, 390
SetI ASST 6 cut(s) 60, 84, 124, 151, 288, 316
SfaNI GCATC 2 cut(s) 343, 405
SfcI CTRYAG 1 cut(s) 199
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 4 cut(s) 43, 360, 378, 537
SseBI AGGCCT 1 cut(s) 324
SspMI CTAG 3 cut(s) 35, 123, 162
StuI AGGCCT 1 cut(s) 324
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 528
TaiI ACGT 1 cut(s) 316
TaqI TCGA 1 cut(s) 543
TasI AATT 4 cut(s) 43, 360, 378, 537
Tru1I TTAA 1 cut(s) 518
Tru9I TTAA 1 cut(s) 518
TscAI CASTG 2 cut(s) 407, 417
TspDTI ATGAA 2 cut(s) 278, 443
TspRI CASTG 2 cut(s) 407, 417
XapI RAATTY 1 cut(s) 360
XcmI CCANNNNNNNNNTGG 1 cut(s) 433
XspI CTAG 3 cut(s) 35, 123, 162
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.