Rh5AG177600

Vinorine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000852
Physical Location & Seq
Forward (+)
19853611 .. 19854954
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG177600.1

Sequence Viewer

Length: 1071 bp
ATGAAGGTTGAGGTTGAGGTTGTCTCCAGAGAGCTTATCAGACCATCTTCTCCAACCCCTGACCACCTCCACCGATACCAACTCTCCTTTCTTGACCAGATATCTCCCCCAGTCTTTATTCCTTTGGTTCTATTTTATTCATCATCCGAGGCTGATACAAATTTCGACATTACTGATATATCGAATCGGCTAAAGAAATCCCTCTCCGATGTCTTGGTCCAATTCTACCCACTCGCTGGACGAGCAAATGACGACGTGTTCATAGACTGCAACGACAAGGGCATACCCTTCTTGGAAACTCGAGTTAACTGCCAACTATCTGATGTTATCCAAAACTCAGTTCCCAGTGAACTCAACAAGTTGGTTCCATTTCAACTAGACGAAGTTGCTGATCTAGCCCTTGGTGTCCAACTAAATGTCTTTGACTGTGGTGGAGTTGCAATTGGTGCTTGCATTTCTCACAAGATTGCAGATGGTTTATCGTTTTTAATGTTCATCAAAACTTGGGCAGCCACTGCTAGAAAAGATCATTATCATCAGACAGATGATCATGCAGTTATGTCTCCAAAGTTTGTATCAGCCACACTGTTCCCACCAAGGAACATATCCGGGACAAGGTTTGATCCACCACTGCCAGAATGCTCTTTCGGAAATCTCTACCGAATTGCAGTTACGGTTCCACGCCTGGATACAGGGGAGGAGTGCTATGGTCTTGTGAAGCAGGTCAGAGAGCAAGTGAGTCATATTGACAAGGATTATGTGAAGAAATTGCAGGAGGGCAGTGAACACTTGAGTTTCATCAAACAAAGCTCTGAGAATTTCTACAAGGGAGAGATGGCTGCACTGAGCTTCACTAGTTTGTGCAGATTTCCTCTGCATGAAGCTAATTTTGGATGGGGAAAGCCTACTTGGGTCGGCTCTCCTGCCCTGCCTTTCAATAATTTGGTTGTTTTTATAGACACTAAATCTGGGGGTGGAATAGAAGCATACATTAACATGAAGGAAGGAGATTTGGCTAAAATTGAATCTGACAAAGAGTTCATTTCATTTGTTTCAAGTGAGTCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

356

Amino Acids

39.71

Weight (kDa)

5.25

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 4 - 177 8.8e-46 Transferase family
Transferase PF02458 206 - 347 4e-16 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 712
AccB7I CCANNNNNTGG 1 cut(s) 236
AclWI GGATC 1 cut(s) 617
AcsI RAATTY 2 cut(s) 160, 817
AfiI CCNNNNNNNGG 2 cut(s) 236, 615
AflIII ACRYGT 1 cut(s) 255
AgsI TTSAA 4 cut(s) 374, 937, 1025, 1056
AhlI ACTAGT 1 cut(s) 854
AjiI CACGTC 1 cut(s) 256
AjnI CCWGG 1 cut(s) 684
AjuI GAANNNNNNNTTGG 8 cut(s) 72, 104, 324, 356, 873, 892, 905, 924
AluBI AGCT 4 cut(s) 34, 810, 849, 884
AluI AGCT 4 cut(s) 34, 810, 849, 884
Alw26I GTCTC 2 cut(s) 28, 567
AlwI GGATC 1 cut(s) 617
AlwNI CAGNNNCTG 1 cut(s) 515
Ama87I CYCGRG 1 cut(s) 300
ApeKI GCWGC 2 cut(s) 509, 839
ApoI RAATTY 2 cut(s) 160, 817
AspS9I GGNCC 1 cut(s) 217
AsuC2I CCSGG 1 cut(s) 610
AvaI CYCGRG 1 cut(s) 300
AvaII GGWCC 1 cut(s) 217
BbvI GCAGC 2 cut(s) 521, 826
BccI CCATC 4 cut(s) 52, 467, 829, 888
BcgI CGANNNNNNTGC 2 cut(s) 291, 325
BciT130I CCWGG 1 cut(s) 686
BciVI GTATCC 1 cut(s) 682
BclI TGATCA 1 cut(s) 547
BcnI CCSGG 1 cut(s) 610
BcoDI GTCTC 2 cut(s) 28, 567
BcuI ACTAGT 1 cut(s) 854
BfaI CTAG 4 cut(s) 377, 395, 519, 855
BfuAI ACCTGC 1 cut(s) 712
BfuI GTATCC 1 cut(s) 682
BisI GCNGC 2 cut(s) 510, 840
BlsI GCNGC 2 cut(s) 511, 841
Bme1390I CCNGG 2 cut(s) 610, 686
Bme18I GGWCC 1 cut(s) 217
BmeT110I CYCGRG 1 cut(s) 300
BmgBI CACGTC 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 2 cut(s) 366, 678
BmrFI CCNGG 2 cut(s) 610, 686
BmrI ACTGGG 2 cut(s) 104, 339
BmuI ACTGGG 2 cut(s) 104, 339
BplI GAGNNNNNCTC 2 cut(s) 8, 40
BpmI CTGGAG 1 cut(s) 10
BpuEI CTTGAG 1 cut(s) 811
BpuMI CCSGG 1 cut(s) 610
BsaBI GATNNNNATC 1 cut(s) 531
BsaJI CCNNGG 3 cut(s) 147, 400, 596
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 615
Bse1I ACTGG 2 cut(s) 110, 345
Bse8I GATNNNNATC 1 cut(s) 531
BseBI CCWGG 1 cut(s) 686
BseDI CCNNGG 3 cut(s) 147, 400, 596
BseGI GGATG 2 cut(s) 143, 899
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 2 cut(s) 236, 615
BseMII CTCAG 3 cut(s) 351, 804, 836
BseNI ACTGG 2 cut(s) 110, 345
BseRI GAGGAG 1 cut(s) 713
BseXI GCAGC 2 cut(s) 521, 826
BsgI GTGCAG 2 cut(s) 825, 883
BsiHKCI CYCGRG 1 cut(s) 300
BsiSI CCGG 1 cut(s) 609
BslFI GGGAC 1 cut(s) 625
BslI CCNNNNNNNGG 2 cut(s) 236, 615
BsmAI GTCTC 2 cut(s) 28, 567
BsmFI GGGAC 1 cut(s) 625
BsmI GAATGC 1 cut(s) 644
BsoBI CYCGRG 1 cut(s) 300
Bsp143I GATC 4 cut(s) 391, 526, 547, 622
BspCNI CTCAG 3 cut(s) 350, 805, 837
BspLI GGNNCC 2 cut(s) 366, 678
BspMI ACCTGC 1 cut(s) 712
BspPI GGATC 1 cut(s) 617
BsrI ACTGG 2 cut(s) 110, 345
BssECI CCNNGG 3 cut(s) 147, 400, 596
BssMI GATC 4 cut(s) 391, 526, 547, 622
BssT1I CCWWGG 2 cut(s) 400, 596
Bst2UI CCWGG 1 cut(s) 686
Bst4CI ACNGT 3 cut(s) 428, 588, 676
BstAPI GCANNNNNTGC 2 cut(s) 446, 515
BstC8I GCNNGC 1 cut(s) 451
BstDEI CTNAG 3 cut(s) 337, 813, 845
BstF5I GGATG 2 cut(s) 143, 899
BstKTI GATC 4 cut(s) 394, 529, 550, 625
BstMAI GTCTC 2 cut(s) 28, 567
BstMBI GATC 4 cut(s) 391, 526, 547, 622
BstMWI GCNNNNNNNGC 4 cut(s) 242, 395, 446, 515
BstNI CCWGG 1 cut(s) 686
BstSCI CCNGG 2 cut(s) 608, 684
BstV1I GCAGC 2 cut(s) 521, 826
BsuI GTATCC 1 cut(s) 682
BtrI CACGTC 1 cut(s) 256
BtsCI GGATG 2 cut(s) 143, 899
BtsI GCAGTG 3 cut(s) 513, 629, 787
BtsIMutI CAGTG 6 cut(s) 352, 513, 584, 629, 787, 842
BveI ACCTGC 1 cut(s) 712
Cac8I GCNNGC 1 cut(s) 451
CaiI CAGNNNCTG 1 cut(s) 515
Cfr13I GGNCC 1 cut(s) 217
CviAII CATG 3 cut(s) 551, 878, 997
DdeI CTNAG 3 cut(s) 337, 813, 845
DpnI GATC 4 cut(s) 393, 528, 549, 624
DpnII GATC 4 cut(s) 391, 526, 547, 622
Eco130I CCWWGG 2 cut(s) 400, 596
Eco32I GATATC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 217
Eco88I CYCGRG 1 cut(s) 300
EcoRII CCWGG 1 cut(s) 684
EcoRV GATATC 1 cut(s) 102
EcoT14I CCWWGG 2 cut(s) 400, 596
ErhI CCWWGG 2 cut(s) 400, 596
FaeI CATG 3 cut(s) 554, 881, 1000
FaqI GGGAC 1 cut(s) 625
FatI CATG 3 cut(s) 550, 877, 996
FbaI TGATCA 1 cut(s) 547
Fnu4HI GCNGC 2 cut(s) 510, 840
FokI GGATG 2 cut(s) 130, 906
Fsp4HI GCNGC 2 cut(s) 510, 840
FspBI CTAG 4 cut(s) 377, 395, 519, 855
GluI GCNGC 2 cut(s) 510, 840
GsuI CTGGAG 1 cut(s) 10
HapII CCGG 1 cut(s) 609
Hin1II CATG 3 cut(s) 554, 881, 1000
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 4 cut(s) 184, 739, 1025, 1061
HpaI GTTAAC 1 cut(s) 307
HpaII CCGG 1 cut(s) 609
Hpy166II GTNNAC 3 cut(s) 307, 350, 785
Hpy188I TCNGA 9 cut(s) 41, 148, 208, 322, 540, 650, 728, 814, 1030
Hpy188III TCNNGA 2 cut(s) 27, 92
Hpy8I GTNNAC 3 cut(s) 307, 350, 785
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 3 cut(s) 298, 994, 998
HpyCH4III ACNGT 3 cut(s) 428, 588, 676
HpyCH4IV ACGT 1 cut(s) 255
HpyF10VI GCNNNNNNNGC 4 cut(s) 242, 395, 446, 515
HpyF3I CTNAG 3 cut(s) 337, 813, 845
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 3 cut(s) 554, 881, 1000
Ksp22I TGATCA 1 cut(s) 547
KspAI GTTAAC 1 cut(s) 307
Kzo9I GATC 4 cut(s) 391, 526, 547, 622
Lsp1109I GCAGC 2 cut(s) 521, 826
MaeI CTAG 4 cut(s) 377, 395, 519, 855
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 670
MalI GATC 4 cut(s) 393, 528, 549, 624
MboI GATC 4 cut(s) 391, 526, 547, 622
MboII GAAGA 2 cut(s) 39, 775
MfeI CAATTG 1 cut(s) 441
MluCI AATT 9 cut(s) 160, 221, 441, 663, 767, 817, 886, 940, 1020
MlyI GAGTC 2 cut(s) 748, 1070
MmeI TCCRAC 2 cut(s) 77, 433
MnlI CCTC 8 cut(s) 4, 10, 77, 142, 212, 691, 769, 882
MseI TTAA 3 cut(s) 306, 488, 993
MslI CAYNNNNRTG 1 cut(s) 995
MspI CCGG 1 cut(s) 609
MspR9I CCNGG 2 cut(s) 610, 686
MunI CAATTG 1 cut(s) 441
Mva1269I GAATGC 1 cut(s) 644
MvaI CCWGG 1 cut(s) 686
MwoI GCNNNNNNNGC 4 cut(s) 242, 395, 446, 515
NciI CCSGG 1 cut(s) 610
NdeII GATC 4 cut(s) 391, 526, 547, 622
NlaIII CATG 3 cut(s) 554, 881, 1000
NlaIV GGNNCC 2 cut(s) 366, 678
PaeR7I CTCGAG 1 cut(s) 300
PctI GAATGC 1 cut(s) 644
PfeI GAWTC 2 cut(s) 184, 1025
PflMI CCANNNNNTGG 1 cut(s) 236
PfoI TCCNGGA 1 cut(s) 608
PkrI GCNGC 2 cut(s) 511, 841
PleI GAGTC 2 cut(s) 747, 1069
PpsI GAGTC 2 cut(s) 747, 1069
Psp6I CCWGG 1 cut(s) 684
PspGI CCWGG 1 cut(s) 684
PspN4I GGNNCC 2 cut(s) 366, 678
PspPI GGNCC 1 cut(s) 217
PspXI VCTCGAGB 1 cut(s) 300
PstNI CAGNNNCTG 1 cut(s) 515
RseI CAYNNNNRTG 1 cut(s) 995
SaqAI TTAA 3 cut(s) 306, 488, 993
SatI GCNGC 2 cut(s) 510, 840
Sau3AI GATC 4 cut(s) 391, 526, 547, 622
Sau96I GGNCC 1 cut(s) 217
SchI GAGTC 2 cut(s) 748, 1070
ScrFI CCNGG 2 cut(s) 610, 686
Sfr274I CTCGAG 1 cut(s) 300
SinI GGWCC 1 cut(s) 217
SlaI CTCGAG 1 cut(s) 300
SmiMI CAYNNNNRTG 1 cut(s) 995
SmlI CTYRAG 2 cut(s) 300, 790
SmoI CTYRAG 2 cut(s) 300, 790
SpeI ACTAGT 1 cut(s) 854
Sse9I AATT 9 cut(s) 160, 221, 441, 663, 767, 817, 886, 940, 1020
SspMI CTAG 4 cut(s) 377, 395, 519, 855
StyD4I CCNGG 2 cut(s) 608, 684
StyI CCWWGG 2 cut(s) 400, 596
TaaI ACNGT 3 cut(s) 428, 588, 676
TaiI ACGT 1 cut(s) 258
TaqI TCGA 3 cut(s) 165, 182, 301
TasI AATT 9 cut(s) 160, 221, 441, 663, 767, 817, 886, 940, 1020
TfiI GAWTC 2 cut(s) 184, 1025
Tru1I TTAA 3 cut(s) 306, 488, 993
Tru9I TTAA 3 cut(s) 306, 488, 993
TscAI CASTG 6 cut(s) 352, 520, 591, 636, 787, 849
TseI GCWGC 2 cut(s) 509, 839
TspDTI ATGAA 9 cut(s) 17, 129, 250, 484, 787, 894, 1013, 1030, 1035
TspRI CASTG 6 cut(s) 352, 520, 591, 636, 787, 849
Van91I CCANNNNNTGG 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 217
XapI RAATTY 2 cut(s) 160, 817
XhoI CTCGAG 1 cut(s) 300
XspI CTAG 4 cut(s) 377, 395, 519, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.