Rh4DG311900

Vinorine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000852
Physical Location & Seq
Reverse (-)
53478382 .. 53479999
1618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG311900.1

Sequence Viewer

Length: 228 bp
ATGGGGATGTCCCACAAGGTCGGGGACGCCCTCTCCTACTTCACGTTCCTCAATGGCCTGGCCGCTGAGTCTCGTGGGGAGGGCAACGATATTCACCCTCCCGAGTTCGTCTCAGACAAGTACTTCCCCCAAAAGGACTTGTCCGGATTCTACCAACACCGCAGCGGAATCATAAAGCAAAACATCTCAACAAAACGCTTCGTCTTCGACGCTCCAATGCATATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

75

Amino Acids

8.48

Weight (kDa)

6.9

Isoelectric Point (pI)

66.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 143
AciI CCGC 3 cut(s) 63, 160, 165
AcoI YGGCCR 1 cut(s) 60
AcyI GRCGYC 1 cut(s) 27
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 133
AjnI CCWGG 1 cut(s) 57
Alw26I GTCTC 2 cut(s) 75, 115
Ama87I CYCGRG 1 cut(s) 101
Aor13HI TCCGGA 1 cut(s) 143
AoxI GGCC 2 cut(s) 55, 60
ApeKI GCWGC 1 cut(s) 162
AsuHPI GGTGA 1 cut(s) 86
AvaI CYCGRG 1 cut(s) 101
BauI CACGAG 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 196
BbvI GCAGC 1 cut(s) 174
BciT130I CCWGG 1 cut(s) 59
BcoDI GTCTC 2 cut(s) 75, 115
BisI GCNGC 2 cut(s) 63, 163
BlsI GCNGC 2 cut(s) 64, 164
BmcAI AGTACT 1 cut(s) 122
Bme1390I CCNGG 1 cut(s) 59
BmeT110I CYCGRG 1 cut(s) 101
BmrFI CCNGG 1 cut(s) 59
BpiI GAAGAC 1 cut(s) 196
BplI GAGNNNNNCTC 2 cut(s) 95, 127
BsaHI GRCGYC 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 143
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 1 cut(s) 133
BseAI TCCGGA 1 cut(s) 143
BseBI CCWGG 1 cut(s) 59
BseGI GGATG 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMII CTCAG 2 cut(s) 57, 126
BseXI GCAGC 1 cut(s) 174
BshFI GGCC 2 cut(s) 57, 62
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 1 cut(s) 144
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 2 cut(s) 75, 115
BsmBI CGTCTC 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 2 cut(s) 57, 62
BsoBI CYCGRG 1 cut(s) 101
Bsp13I TCCGGA 1 cut(s) 143
BspACI CCGC 3 cut(s) 63, 160, 165
BspANI GGCC 2 cut(s) 57, 62
BspCNI CTCAG 2 cut(s) 58, 125
BspEI TCCGGA 1 cut(s) 143
BssNI GRCGYC 1 cut(s) 27
BssSI CACGAG 1 cut(s) 72
Bst2BI CACGAG 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 59
BstACI GRCGYC 1 cut(s) 27
BstDEI CTNAG 2 cut(s) 66, 112
BstF5I GGATG 1 cut(s) 12
BstMAI GTCTC 2 cut(s) 75, 115
BstNI CCWGG 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 174
BstV2I GAAGAC 1 cut(s) 196
BsuRI GGCC 2 cut(s) 57, 62
BtsCI GGATG 1 cut(s) 12
CseI GACGC 2 cut(s) 35, 218
Csp6I GTAC 1 cut(s) 121
CviJI RGCY 2 cut(s) 57, 62
CviKI_1 RGCY 2 cut(s) 57, 62
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 2 cut(s) 66, 112
EaeI YGGCCR 1 cut(s) 60
Eco88I CYCGRG 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 57
EcoT22I ATGCAT 1 cut(s) 222
Esp3I CGTCTC 1 cut(s) 115
FaiI YATR 2 cut(s) 173, 222
FaqI GGGAC 1 cut(s) 38
Fnu4HI GCNGC 2 cut(s) 63, 163
FokI GGATG 1 cut(s) 19
Fsp4HI GCNGC 2 cut(s) 63, 163
GluI GCNGC 2 cut(s) 63, 163
HaeIII GGCC 2 cut(s) 57, 62
HapII CCGG 1 cut(s) 144
HgaI GACGC 2 cut(s) 35, 218
Hin1I GRCGYC 1 cut(s) 27
HinfI GANTC 3 cut(s) 68, 147, 168
HpaII CCGG 1 cut(s) 144
HphI GGTGA 1 cut(s) 86
Hpy188I TCNGA 2 cut(s) 115, 227
Hpy188III TCNNGA 2 cut(s) 101, 144
Hpy99I CGWCG 1 cut(s) 212
HpyCH4IV ACGT 1 cut(s) 44
HpyCH4V TGCA 1 cut(s) 220
HpyF3I CTNAG 2 cut(s) 66, 112
HpySE526I ACGT 1 cut(s) 44
Hsp92I GRCGYC 1 cut(s) 27
Kpn2I TCCGGA 1 cut(s) 143
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 3 cut(s) 44, 71, 157
Lsp1109I GCAGC 1 cut(s) 174
MaeII ACGT 1 cut(s) 44
MboII GAAGA 1 cut(s) 196
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 4 cut(s) 41, 59, 73, 108
Mph1103I ATGCAT 1 cut(s) 222
MroI TCCGGA 1 cut(s) 143
MspA1I CMGCKG 2 cut(s) 65, 165
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 59
MvaI CCWGG 1 cut(s) 59
NsiI ATGCAT 1 cut(s) 222
PfeI GAWTC 2 cut(s) 147, 168
PkrI GCNGC 2 cut(s) 64, 164
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SatI GCNGC 2 cut(s) 63, 163
ScaI AGTACT 1 cut(s) 122
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 59
SetI ASST 2 cut(s) 21, 47
SsiI CCGC 3 cut(s) 63, 160, 165
StyD4I CCNGG 1 cut(s) 57
TaiI ACGT 1 cut(s) 47
TaqI TCGA 1 cut(s) 207
TatI WGTACW 1 cut(s) 120
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 2 cut(s) 147, 168
TseI GCWGC 1 cut(s) 162
ZrmI AGTACT 1 cut(s) 122
Zsp2I ATGCAT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.