Rh5DG197400

Vinorine synthase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
21994248 .. 21996412
2165 bp
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UTR
Exon/CDS
Intron
Rh5DG197400.1

Sequence Viewer

Length: 162 bp
ATGAGCATCGCCATGGGGATGTCCCACAAGGTCGGGGATGCCCTCTCCTACTTCACGTTTCTCAATGGCCTGGCCGCTGAGGCTCGTGGGGAGGGCAACGATATTCACCCTCCCGATTTCATCTCAGACAAGTTGACATTTGGACAATTAAAGGCAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

53

Amino Acids

5.69

Weight (kDa)

5.0

Isoelectric Point (pI)

21.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 75
AcoI YGGCCR 1 cut(s) 72
AjnI CCWGG 1 cut(s) 69
AoxI GGCC 2 cut(s) 67, 72
AsuHPI GGTGA 1 cut(s) 98
BauI CACGAG 1 cut(s) 84
BbvCI CCTCAGC 1 cut(s) 78
BciT130I CCWGG 1 cut(s) 71
BglI GCCNNNNNGGC 1 cut(s) 80
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 71
BmrFI CCNGG 1 cut(s) 71
BmsI GCATC 2 cut(s) 15, 28
Bpu10I CCTNAGC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 12
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 2 cut(s) 24, 43
BseMII CTCAG 2 cut(s) 69, 138
BshFI GGCC 2 cut(s) 69, 74
BslFI GGGAC 1 cut(s) 7
BsmFI GGGAC 1 cut(s) 7
BsnI GGCC 2 cut(s) 69, 74
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 1 cut(s) 75
BspANI GGCC 2 cut(s) 69, 74
BspCNI CTCAG 2 cut(s) 70, 137
BssECI CCNNGG 1 cut(s) 12
BssSI CACGAG 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 12
Bst2BI CACGAG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 71
BstDEI CTNAG 2 cut(s) 78, 124
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 2 cut(s) 24, 43
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 69
BsuRI GGCC 2 cut(s) 69, 74
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 2 cut(s) 24, 43
CviAII CATG 1 cut(s) 13
CviJI RGCY 3 cut(s) 69, 74, 83
CviKI_1 RGCY 3 cut(s) 69, 74, 83
DdeI CTNAG 2 cut(s) 78, 124
EaeI YGGCCR 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 1 cut(s) 16
FaiI YATR 1 cut(s) 14
FaqI GGGAC 1 cut(s) 7
FatI CATG 1 cut(s) 12
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 2 cut(s) 31, 50
Fsp4HI GCNGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 75
HaeIII GGCC 2 cut(s) 69, 74
Hin1II CATG 1 cut(s) 16
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 1 cut(s) 113
Hpy8I GTNNAC 1 cut(s) 135
HpyCH4IV ACGT 1 cut(s) 56
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 2 cut(s) 78, 124
HpySE526I ACGT 1 cut(s) 56
Hsp92II CATG 1 cut(s) 16
LpnPI CCDG 2 cut(s) 56, 83
LweI GCATC 2 cut(s) 15, 28
MaeII ACGT 1 cut(s) 56
MluCI AATT 1 cut(s) 146
MnlI CCTC 4 cut(s) 53, 73, 85, 120
MseI TTAA 1 cut(s) 149
MslI CAYNNNNRTG 2 cut(s) 11, 17
MspA1I CMGCKG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 71
MvaI CCWGG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 80
NcoI CCATGG 1 cut(s) 12
NlaIII CATG 1 cut(s) 16
PkrI GCNGC 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
RseI CAYNNNNRTG 2 cut(s) 11, 17
SaqAI TTAA 1 cut(s) 149
SatI GCNGC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 71
SetI ASST 2 cut(s) 33, 59
SfaNI GCATC 2 cut(s) 15, 28
SmiMI CAYNNNNRTG 2 cut(s) 11, 17
Sse9I AATT 1 cut(s) 146
SsiI CCGC 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 69
StyI CCWWGG 1 cut(s) 12
TaiI ACGT 1 cut(s) 59
TasI AATT 1 cut(s) 146
TauI GCSGC 1 cut(s) 77
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.