AT1G36390

Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001161
Physical Location & Seq
Reverse (-)
13701401 .. 13703573
2173 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G36390.1

Sequence Viewer

Length: 840 bp
ATGGCGATTTCTTTCGCAATCGATCCTTCCATATCTCCTTGCTTCTCCTTCTCCTCTCCATCTTCTTCATCAAAAACCTTACCTTTACGAAACAACCTCCATTTCCATGGCAGACCTTCACCAATATCTCCACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTGCTCACCAAACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACCCTAATTAGGTCATATAAACAAGCTCTTCTCAACGGAGACGAAACCTCAGTTACAGAAATCGAAACGATGTTTTGCAAAATCGAGAAGGAGAAGAATAAAATGGATCAAAAGGTTTTATCTTTATCAATGAAGATAGCTTCAGAGAAAGAGATGAAAATTCGATTACAAGCTGATTTTGATAATACAAGGAAGAAGCTTGATAAAGATAGGCTTAGTACAGAGTCTAATGCAAAAGTTCAGATTCTTAAGTCTCTTTTACCTATTATTGATAGTTTTGAGAAAGCTAAGTTACAGGTTAGAGTTGATACTGATAAGGAGAAGAAGATTGATACGAGTTATCAAGGGATTTATAGGCAATTTGTTGAGGTTTTGAGATATCTTCGTGTTTCGGTTATTGCAACTGTTGGCAAGCCTTTTGATCCTTTGTTGCACGAGGCTATTTCACGGGAAGAATCTGAGGCGGTTAAAGCAGGGATAATAACCGAGGAGCTGAACAAGGGATTTGTTCTAGGAGATCGTGTTCTGAGACCAGCAAAGGTTAAAGTTTCTTTAGGACCCGTCAACAAGAAGACTCCTTCAGCTGCTGAGGAAATAACACCTTCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GrpE

Protein Analysis

279

Amino Acids

31.22

Weight (kDa)

9.44

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GrpE PF01025 105 - 260 7.2e-33 GrpE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 692
AclWI GGATC 3 cut(s) 17, 342, 644
AcsI RAATTY 3 cut(s) 155, 202, 387
AcuI CTGAAG 2 cut(s) 354, 792
AfaI GTAC 1 cut(s) 448
AfiI CCNNNNNNNGG 1 cut(s) 237
AflII CTTAAG 1 cut(s) 476
AgsI TTSAA 2 cut(s) 141, 207
AloI GAACNNNNNNTCC 2 cut(s) 735, 767
AluBI AGCT 7 cut(s) 254, 368, 401, 427, 515, 721, 812
AluI AGCT 7 cut(s) 254, 368, 401, 427, 515, 721, 812
Alw26I GTCTC 3 cut(s) 261, 486, 751
AlwI GGATC 3 cut(s) 17, 342, 644
AlwNI CAGNNNCTG 1 cut(s) 815
ApeKI GCWGC 2 cut(s) 211, 812
ApoI RAATTY 3 cut(s) 155, 202, 387
AspS9I GGNCC 1 cut(s) 785
AsuHPI GGTGA 2 cut(s) 111, 167
AvaII GGWCC 1 cut(s) 785
BauI CACGAG 1 cut(s) 662
BbsI GAAGAC 1 cut(s) 806
BbvCI CCTCAGC 1 cut(s) 816
BbvI GCAGC 2 cut(s) 223, 799
BccI CCATC 1 cut(s) 67
BcoDI GTCTC 3 cut(s) 261, 486, 751
BfaI CTAG 1 cut(s) 740
BfrI CTTAAG 1 cut(s) 476
BisI GCNGC 2 cut(s) 212, 813
BlsI GCNGC 2 cut(s) 213, 814
Bme18I GGWCC 1 cut(s) 785
BmgT120I GGNCC 1 cut(s) 785
BmiI GGNNCC 1 cut(s) 787
BmrI ACTGGG 1 cut(s) 141
BmuI ACTGGG 1 cut(s) 141
BpiI GAAGAC 1 cut(s) 806
Bpu10I CCTNAGC 1 cut(s) 816
Bsa29I ATCGAT 1 cut(s) 21
BsaI GGTCTC 1 cut(s) 751
BsaJI CCNNGG 2 cut(s) 106, 714
BsaXI ACNNNNNCTCC 2 cut(s) 735, 765
Bsc4I CCNNNNNNNGG 1 cut(s) 237
Bse1I ACTGG 1 cut(s) 147
BseCI ATCGAT 1 cut(s) 21
BseDI CCNNGG 2 cut(s) 106, 714
BseLI CCNNNNNNNGG 1 cut(s) 237
BseMII CTCAG 4 cut(s) 291, 678, 746, 807
BseNI ACTGG 1 cut(s) 147
BseRI GAGGAG 2 cut(s) 43, 731
BseXI GCAGC 2 cut(s) 223, 799
BshVI ATCGAT 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 237
BsmAI GTCTC 3 cut(s) 261, 486, 751
BsmBI CGTCTC 1 cut(s) 261
Bso31I GGTCTC 1 cut(s) 751
Bsp143I GATC 4 cut(s) 22, 334, 649, 745
Bsp19I CCATGG 1 cut(s) 106
BspACI CCGC 1 cut(s) 692
BspCNI CTCAG 4 cut(s) 290, 679, 747, 808
BspDI ATCGAT 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 787
BspPI GGATC 3 cut(s) 17, 342, 644
BspQI GCTCTTC 1 cut(s) 261
BspTI CTTAAG 1 cut(s) 476
BspTNI GGTCTC 1 cut(s) 751
BsrI ACTGG 1 cut(s) 147
BssECI CCNNGG 2 cut(s) 106, 714
BssMI GATC 4 cut(s) 22, 334, 649, 745
BssSI CACGAG 1 cut(s) 662
BssT1I CCWWGG 1 cut(s) 106
Bst2BI CACGAG 1 cut(s) 662
Bst4CI ACNGT 2 cut(s) 191, 634
Bst6I CTCTTC 1 cut(s) 261
BstAFI CTTAAG 1 cut(s) 476
BstC8I GCNNGC 2 cut(s) 216, 641
BstDEI CTNAG 6 cut(s) 277, 443, 516, 687, 755, 816
BstDSI CCRYGG 1 cut(s) 106
BstKTI GATC 4 cut(s) 25, 337, 652, 748
BstMAI GTCTC 3 cut(s) 261, 486, 751
BstMBI GATC 4 cut(s) 22, 334, 649, 745
BstMWI GCNNNNNNNGC 1 cut(s) 698
BstV1I GCAGC 2 cut(s) 223, 799
BstV2I GAAGAC 1 cut(s) 806
BstXI CCANNNNNNTGG 1 cut(s) 107
Bsu15I ATCGAT 1 cut(s) 21
BsuTUI ATCGAT 1 cut(s) 21
BtgI CCRYGG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 196
Cac8I GCNNGC 2 cut(s) 216, 641
CaiI CAGNNNCTG 1 cut(s) 815
Cfr13I GGNCC 1 cut(s) 785
ClaI ATCGAT 1 cut(s) 21
Csp6I GTAC 1 cut(s) 447
CviAII CATG 1 cut(s) 107
CviQI GTAC 1 cut(s) 447
DdeI CTNAG 6 cut(s) 277, 443, 516, 687, 755, 816
DpnI GATC 4 cut(s) 24, 336, 651, 747
DpnII GATC 4 cut(s) 22, 334, 649, 745
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 106
Eco31I GGTCTC 1 cut(s) 751
Eco32I GATATC 1 cut(s) 608
Eco47I GGWCC 1 cut(s) 785
Eco57I CTGAAG 2 cut(s) 354, 792
EcoO109I RGGNCCY 1 cut(s) 785
EcoRI GAATTC 1 cut(s) 202
EcoRV GATATC 1 cut(s) 608
EcoT14I CCWWGG 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 106
Esp3I CGTCTC 1 cut(s) 261
FaeI CATG 1 cut(s) 110
FaiI YATR 5 cut(s) 32, 108, 244, 246, 582
FalI AAGNNNNNCTT 2 cut(s) 426, 458
FatI CATG 1 cut(s) 106
Fnu4HI GCNGC 2 cut(s) 212, 813
Fsp4HI GCNGC 2 cut(s) 212, 813
FspBI CTAG 1 cut(s) 740
GluI GCNGC 2 cut(s) 212, 813
Hin1II CATG 1 cut(s) 110
HincII GTYRAC 1 cut(s) 793
HindII GTYRAC 1 cut(s) 793
HindIII AAGCTT 1 cut(s) 425
HinfI GANTC 4 cut(s) 452, 472, 683, 802
HphI GGTGA 2 cut(s) 111, 167
Hpy166II GTNNAC 1 cut(s) 793
Hpy188I TCNGA 4 cut(s) 373, 471, 688, 756
Hpy188III TCNNGA 1 cut(s) 313
Hpy8I GTNNAC 1 cut(s) 793
HpyAV CCTTC 6 cut(s) 36, 58, 126, 310, 816, 840
HpyCH4III ACNGT 2 cut(s) 191, 634
HpyCH4V TGCA 4 cut(s) 306, 461, 629, 661
HpyF10VI GCNNNNNNNGC 1 cut(s) 698
HpyF3I CTNAG 6 cut(s) 277, 443, 516, 687, 755, 816
Hsp92II CATG 1 cut(s) 110
Kzo9I GATC 4 cut(s) 22, 334, 649, 745
LguI GCTCTTC 1 cut(s) 261
LmnI GCTCC 1 cut(s) 718
LpnPI CCDG 4 cut(s) 160, 509, 687, 774
Lsp1109I GCAGC 2 cut(s) 223, 799
MaeI CTAG 1 cut(s) 740
MaeIII GTNAC 2 cut(s) 280, 519
MalI GATC 4 cut(s) 24, 336, 651, 747
MboI GATC 4 cut(s) 22, 334, 649, 745
MluCI AATT 5 cut(s) 155, 202, 234, 387, 587
MlyI GAGTC 2 cut(s) 461, 796
MnlI CCTC 8 cut(s) 64, 107, 286, 589, 658, 682, 709, 811
MseI TTAA 3 cut(s) 477, 696, 771
MslI CAYNNNNRTG 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 812
MspCI CTTAAG 1 cut(s) 476
MwoI GCNNNNNNNGC 1 cut(s) 698
NcoI CCATGG 1 cut(s) 106
NdeII GATC 4 cut(s) 22, 334, 649, 745
NlaIII CATG 1 cut(s) 110
NlaIV GGNNCC 1 cut(s) 787
PciSI GCTCTTC 1 cut(s) 261
PfeI GAWTC 2 cut(s) 472, 683
PkrI GCNGC 2 cut(s) 213, 814
PleI GAGTC 2 cut(s) 460, 796
PpsI GAGTC 2 cut(s) 460, 796
PpuMI RGGWCCY 1 cut(s) 785
Psp5II RGGWCCY 1 cut(s) 785
PspN4I GGNNCC 1 cut(s) 787
PspPI GGNCC 1 cut(s) 785
PspPPI RGGWCCY 1 cut(s) 785
PstNI CAGNNNCTG 1 cut(s) 815
PvuII CAGCTG 1 cut(s) 812
RsaI GTAC 1 cut(s) 448
RsaNI GTAC 1 cut(s) 447
RseI CAYNNNNRTG 1 cut(s) 105
SapI GCTCTTC 1 cut(s) 261
SaqAI TTAA 3 cut(s) 477, 696, 771
SatI GCNGC 2 cut(s) 212, 813
Sau3AI GATC 4 cut(s) 22, 334, 649, 745
Sau96I GGNCC 1 cut(s) 785
SchI GAGTC 2 cut(s) 461, 796
SinI GGWCC 1 cut(s) 785
SmiMI CAYNNNNRTG 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
Sse9I AATT 5 cut(s) 155, 202, 234, 387, 587
SsiI CCGC 1 cut(s) 692
SspMI CTAG 1 cut(s) 740
StyI CCWWGG 1 cut(s) 106
TaaI ACNGT 2 cut(s) 191, 634
TaqI TCGA 5 cut(s) 21, 151, 291, 312, 391
TasI AATT 5 cut(s) 155, 202, 234, 387, 587
TatI WGTACW 1 cut(s) 446
TfiI GAWTC 2 cut(s) 472, 683
Tru1I TTAA 3 cut(s) 477, 696, 771
Tru9I TTAA 3 cut(s) 477, 696, 771
TscAI CASTG 1 cut(s) 196
TseI GCWGC 2 cut(s) 211, 812
TspDTI ATGAA 3 cut(s) 57, 374, 398
TspGWI ACGGA 1 cut(s) 279
TspRI CASTG 1 cut(s) 196
Vha464I CTTAAG 1 cut(s) 476
VpaK11BI GGWCC 1 cut(s) 785
XapI RAATTY 3 cut(s) 155, 202, 387
XspI CTAG 1 cut(s) 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.