Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001070.1

Orthogroup ID

OG0001161

Physical Location & Seq

Genomic Coordinates Reverse (-)

155001 .. 156319

Gene Structure 1319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001070.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

atgaagagtttgcatgtggcgtctgtatcaactatgggaaaaccctttcatccttcggtgaatgaagcgactgcacgagaagagtctcaagaattcccagaggggattgtcattcaagaaattcgccgtggctttttacttggtggtcgacttctaagaccagcaatggttaatgtctctatagggcctggcagtaagaaaacccctatggccactgaaaaatcatcagggtcacctgcaacagctgcttcggtagagaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GrpE

Protein Analysis

87

Amino Acids

9.19

Weight (kDa)

9.39

Isoelectric Point (pI)

55.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36390 AT1G36390
fragaria_vesca	FvH4_5g38490 FvH4_5g38490 FvH4_5g38550 FvH4_5g38590 FvH4_5g38670 FvH4_5g38670 FvH4_5g38670 FvH4_5g38670 FvH4_5g38670
malus_domestica	MD00G1103800.v1.1 MD15G1359500.v1.1
prunus_persica	Prupe.1G507100_v2.0.a1
pyrus_communis	pycom08g14880 pycom15g32190
rosa_chinensis	RchiOBHm_Chr7g0240521 RchiOBHm_Chr7g0240551 RchiOBHm_Chr7g0240561
rosa_laevigata	RLG00000000628 RLG00000000650 RLG00000000665 RLG00000007790
rosa_multiflora	Rmu_sc0001070.1_g000034 Rmu_sc0002551.1_g000025 Rmu_sc0002551.1_g000035 Rmu_sc0005071.1_g000018 Rmu_sc0008477.1_g000007 Rmu_sc0020449.1_g000001 Rmu_sc0024557.1_g000002
rosa_roxburghii	Rroxscaffold_3G00219680 Rroxscaffold_3G00219830 Rroxscaffold_3G00219840 Rroxscaffold_3G00219900
rosa_rugosa	Rorug07G0336900 Rorug07G0337300 Rorug07G0337400 Rorug07G0338300
rosa_samantha	Rh2AG294800 Rh7AG491400 Rh7AG491800 Rh7AG491900 Rh7AG492700 Rh7BG464000 Rh7BG464300 Rh7CG507400 Rh7CG507900 Rh7CG508100 Rh7CG509800 Rh7DG475200 Rh7DG475500 Rh7DG477400
rosa_wichuraiana	Rw0G013470 Rw7G041170 Rw7G041290 Rw7G041400 Rw7G041430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	244
Acc36I	ACCTGC	1 cut(s)	244
AccI	GTMKAC	1 cut(s)	148
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	2 cut(s)	92, 120
AcyI	GRCGYC	1 cut(s)	20
AgsI	TTSAA	1 cut(s)	116
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	1 cut(s)	245
AluI	AGCT	1 cut(s)	245
Alw26I	GTCTC	2 cut(s)	90, 181
AoxI	GGCC	2 cut(s)	185, 210
ApeKI	GCWGC	1 cut(s)	245
ApoI	RAATTY	2 cut(s)	92, 120
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	70, 225
BalI	TGGCCA	1 cut(s)	212
BauI	CACGAG	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	232
BceAI	ACGGC	1 cut(s)	111
BciT130I	CCWGG	1 cut(s)	189
BcoDI	GTCTC	2 cut(s)	90, 181
BfmI	CTRYAG	1 cut(s)	180
BfuAI	ACCTGC	1 cut(s)	244
BisI	GCNGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	72
BsaHI	GRCGYC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	49
BseMI	GCAATG	1 cut(s)	171
BseXI	GCAGC	1 cut(s)	232
BsgI	GTGCAG	1 cut(s)	57
BshFI	GGCC	2 cut(s)	187, 212
BsmAI	GTCTC	2 cut(s)	90, 181
BsnI	GGCC	2 cut(s)	187, 212
BspANI	GGCC	2 cut(s)	187, 212
BspMI	ACCTGC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	127
BssNI	GRCGYC	1 cut(s)	20
BssSI	CACGAG	1 cut(s)	75
Bst2BI	CACGAG	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	189
Bst6I	CTCTTC	1 cut(s)	75
BstACI	GRCGYC	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstDEI	CTNAG	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	127
BstEII	GGTNACC	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	49
BstMAI	GTCTC	2 cut(s)	90, 181
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	1 cut(s)	17
BstPI	GGTNACC	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	232
BsuRI	GGCC	2 cut(s)	187, 212
BtgI	CCRYGG	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	213
BveI	ACCTGC	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	185
CseI	GACGC	1 cut(s)	9
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	4 cut(s)	132, 187, 212, 245
CviKI_1	RGCY	4 cut(s)	132, 187, 212, 245
DdeI	CTNAG	1 cut(s)	155
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco91I	GGTNACC	1 cut(s)	231
EcoO109I	RGGNCCY	1 cut(s)	185
EcoO65I	GGTNACC	1 cut(s)	231
EcoRI	GAATTC	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	187
FaeI	CATG	1 cut(s)	17
FaiI	YATR	4 cut(s)	15, 35, 182, 209
FatI	CATG	1 cut(s)	13
FblI	GTMKAC	1 cut(s)	148
Fnu4HI	GCNGC	1 cut(s)	246
FokI	GGATG	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	246
GluI	GCNGC	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	187, 212
HgaI	GACGC	1 cut(s)	9
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	1 cut(s)	17
HincII	GTYRAC	1 cut(s)	149
HindII	GTYRAC	1 cut(s)	149
HinfI	GANTC	1 cut(s)	83
HphI	GGTGA	2 cut(s)	70, 225
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188III	TCNNGA	2 cut(s)	89, 116
Hpy8I	GTNNAC	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	63
HpyCH4V	TGCA	3 cut(s)	13, 74, 239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	1 cut(s)	155
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	1 cut(s)	17
LpnPI	CCDG	6 cut(s)	111, 174, 174, 201, 213, 249
Lsp1109I	GCAGC	1 cut(s)	232
MaeIII	GTNAC	1 cut(s)	231
MboII	GAAGA	2 cut(s)	16, 92
MlsI	TGGCCA	1 cut(s)	212
MluCI	AATT	3 cut(s)	92, 120, 259
MluNI	TGGCCA	1 cut(s)	212
MlyI	GAGTC	1 cut(s)	92
MnlI	CCTC	1 cut(s)	94
Mox20I	TGGCCA	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	212
MseI	TTAA	1 cut(s)	171
Msp20I	TGGCCA	1 cut(s)	212
MspA1I	CMGCKG	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	245
NlaIII	CATG	1 cut(s)	17
NmuCI	GTSAC	1 cut(s)	231
NspI	RCATGY	1 cut(s)	17
PaqCI	CACCTGC	1 cut(s)	244
PkrI	GCNGC	1 cut(s)	247
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	187
PspEI	GGTNACC	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	245
SalI	GTCGAC	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	1 cut(s)	246
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	189
SetI	ASST	2 cut(s)	238, 247
SfcI	CTRYAG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
Sse9I	AATT	3 cut(s)	92, 120, 259
StyD4I	CCNGG	1 cut(s)	187
TaqI	TCGA	1 cut(s)	148
TasI	AATT	3 cut(s)	92, 120, 259
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	231
TseI	GCWGC	1 cut(s)	245
Tsp45I	GTSAC	1 cut(s)	231
TspDTI	ATGAA	3 cut(s)	17, 38, 78
TspRI	CASTG	1 cut(s)	220
XapI	RAATTY	2 cut(s)	92, 120
XceI	RCATGY	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.