Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001161

Physical Location & Seq

Genomic Coordinates Forward (+)

36322343 .. 36330909

Gene Structure 8567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG294800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGAGACTGATGACTCGAATTGGTTTCAGGGCACTCTGTCTTCCGCATTTGTTCTGGAGAATGGGCCTTGGAAGGGATCTCCATGGCGTGTGCTTCAGGTTACATGGGATGAACCTGAAGTTCTGCAGAATGCTAAGAGGGTGAGCCAGGGCAAGTTGACTTTGTTGCATCAACACCTTCCCCTCATACTGTACCTTTGCTTCATACTGTATATCCCTCCACAAAGAGACTCAGAGCTCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

81

Amino Acids

9.43

Weight (kDa)

5.42

Isoelectric Point (pI)

43.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARF_AD	PF06507	1 - 53	3.2e-13	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36390 AT1G36390
fragaria_vesca	FvH4_5g38490 FvH4_5g38490 FvH4_5g38550 FvH4_5g38590 FvH4_5g38670 FvH4_5g38670 FvH4_5g38670 FvH4_5g38670 FvH4_5g38670
malus_domestica	MD00G1103800.v1.1 MD15G1359500.v1.1
prunus_persica	Prupe.1G507100_v2.0.a1
pyrus_communis	pycom08g14880 pycom15g32190
rosa_chinensis	RchiOBHm_Chr7g0240521 RchiOBHm_Chr7g0240551 RchiOBHm_Chr7g0240561
rosa_laevigata	RLG00000000628 RLG00000000650 RLG00000000665 RLG00000007790
rosa_multiflora	Rmu_sc0001070.1_g000034 Rmu_sc0002551.1_g000025 Rmu_sc0002551.1_g000035 Rmu_sc0005071.1_g000018 Rmu_sc0008477.1_g000007 Rmu_sc0020449.1_g000001 Rmu_sc0024557.1_g000002
rosa_roxburghii	Rroxscaffold_3G00219680 Rroxscaffold_3G00219830 Rroxscaffold_3G00219840 Rroxscaffold_3G00219900
rosa_rugosa	Rorug07G0336900 Rorug07G0337300 Rorug07G0337400 Rorug07G0338300
rosa_samantha	Rh2AG294800 Rh7AG491400 Rh7AG491800 Rh7AG491900 Rh7AG492700 Rh7BG464000 Rh7BG464300 Rh7CG507400 Rh7CG507900 Rh7CG508100 Rh7CG509800 Rh7DG475200 Rh7DG475500 Rh7DG477400
rosa_wichuraiana	Rw0G013470 Rw7G041170 Rw7G041290 Rw7G041400 Rw7G041430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	45
AclWI	GGATC	1 cut(s)	85
AcuI	CTGAAG	2 cut(s)	80, 138
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	74
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	1 cut(s)	238
AluI	AGCT	1 cut(s)	238
Alw21I	GWGCWC	1 cut(s)	240
Alw26I	GTCTC	1 cut(s)	222
AlwI	GGATC	1 cut(s)	85
AoxI	GGCC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	154
BaeGI	GKGCMC	1 cut(s)	35
BanII	GRGCYC	1 cut(s)	240
BarI	GAAGNNNNNNTAC	2 cut(s)	185, 217
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	240
BciT130I	CCWGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	125
Bme1390I	CCNGG	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	65
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	77
BsaJI	CCNNGG	3 cut(s)	68, 83, 148
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	3 cut(s)	68, 83, 148
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	246
BseSI	GKGCMC	1 cut(s)	35
BshFI	GGCC	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	240
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	222
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	67
Bsp1286I	GDGCHC	2 cut(s)	35, 240
Bsp143I	GATC	1 cut(s)	77
Bsp19I	CCATGG	1 cut(s)	83
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	1 cut(s)	67
BspCNI	CTCAG	1 cut(s)	245
BspMAI	CTGCAG	1 cut(s)	129
BspPI	GGATC	1 cut(s)	85
BssECI	CCNNGG	3 cut(s)	68, 83, 148
BssMI	GATC	1 cut(s)	77
BssT1I	CCWWGG	2 cut(s)	68, 83
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	2 cut(s)	192, 210
BstDEI	CTNAG	2 cut(s)	135, 232
BstDSI	CCRYGG	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	1 cut(s)	80
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	147
BstSFI	CTRYAG	1 cut(s)	125
BstSLI	GKGCMC	1 cut(s)	35
BstV2I	GAAGAC	1 cut(s)	33
BstX2I	RGATCY	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	67
BtgI	CCRYGG	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	2 cut(s)	84, 105
CviJI	RGCY	3 cut(s)	67, 147, 238
CviKI_1	RGCY	3 cut(s)	67, 147, 238
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	2 cut(s)	135, 232
DpnI	GATC	1 cut(s)	79
DpnII	GATC	1 cut(s)	77
Ecl136II	GAGCTC	1 cut(s)	238
Eco130I	CCWWGG	2 cut(s)	68, 83
Eco24I	GRGCYC	1 cut(s)	240
Eco53kI	GAGCTC	1 cut(s)	238
Eco57I	CTGAAG	2 cut(s)	80, 138
EcoICRI	GAGCTC	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	2 cut(s)	68, 83
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	2 cut(s)	68, 83
FaeI	CATG	2 cut(s)	87, 108
FaiI	YATR	5 cut(s)	85, 106, 188, 206, 213
FatI	CATG	2 cut(s)	83, 104
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	1 cut(s)	240
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	67
Hin1II	CATG	2 cut(s)	87, 108
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HinfI	GANTC	2 cut(s)	14, 230
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	1 cut(s)	235
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	1 cut(s)	159
HpyAV	CCTTC	2 cut(s)	67, 188
HpyCH4III	ACNGT	2 cut(s)	192, 210
HpyCH4V	TGCA	2 cut(s)	127, 169
HpyF3I	CTNAG	2 cut(s)	135, 232
Hsp92II	CATG	2 cut(s)	87, 108
Kzo9I	GATC	1 cut(s)	77
LmnI	GCTCC	1 cut(s)	243
LpnPI	CCDG	6 cut(s)	14, 41, 83, 129, 134, 161
LweI	GCATC	1 cut(s)	178
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	1 cut(s)	79
MboI	GATC	1 cut(s)	77
MboII	GAAGA	1 cut(s)	33
MflI	RGATCY	1 cut(s)	77
MhlI	GDGCHC	2 cut(s)	35, 240
MluCI	AATT	1 cut(s)	19
MlyI	GAGTC	2 cut(s)	8, 224
MnlI	CCTC	3 cut(s)	132, 194, 228
MspR9I	CCNGG	1 cut(s)	149
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	149
NcoI	CCATGG	1 cut(s)	83
NdeII	GATC	1 cut(s)	77
NlaIII	CATG	2 cut(s)	87, 108
PctI	GAATGC	1 cut(s)	136
PleI	GAGTC	2 cut(s)	8, 224
PpsI	GAGTC	2 cut(s)	8, 224
Psp124BI	GAGCTC	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspPI	GGNCC	1 cut(s)	65
PstI	CTGCAG	1 cut(s)	129
PsuI	RGATCY	1 cut(s)	77
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
SacI	GAGCTC	1 cut(s)	240
Sau3AI	GATC	1 cut(s)	77
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	2 cut(s)	8, 224
ScrFI	CCNGG	1 cut(s)	149
SduI	GDGCHC	2 cut(s)	35, 240
SetI	ASST	5 cut(s)	102, 118, 180, 198, 240
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	1 cut(s)	125
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	1 cut(s)	45
SstI	GAGCTC	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	147
StyI	CCWWGG	2 cut(s)	68, 83
TaaI	ACNGT	2 cut(s)	192, 210
TaqI	TCGA	1 cut(s)	17
TasI	AATT	1 cut(s)	19
TspDTI	ATGAA	2 cut(s)	126, 193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.