FvH4_5g38550

Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001161
Physical Location & Seq
Reverse (-)
28495220 .. 28496414
1195 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g38550.t1

Sequence Viewer

Length: 258 bp
ATGGCGAATTCGTTGTTTATTCCAAACAACTACTTGGTCATACCTCCTCCTCGACTTTCTGCTTCTTTCTCCTCAAAACCTCAACCTCTTCTTGAGTTTTCAGGGGCCAACTATTCCCCTATGGTCCTACGTAGCAGCAGCAGGAGCAGGCGTGCCTTGTCTTTCAAATCTCATCTCGCTGCTGCTCGAGGCTATGTTCCCCCAGTGAATGCCAAAGAGGATAACGTAAGTTTAGGTACTACATTGACAGCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GrpE

Protein Analysis

86

Amino Acids

9.18

Weight (kDa)

10.59

Isoelectric Point (pI)

56.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 7
AfaI GTAC 1 cut(s) 238
AgsI TTSAA 1 cut(s) 166
AluBI AGCT 1 cut(s) 251
AluI AGCT 1 cut(s) 251
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 4 cut(s) 135, 138, 179, 182
ApoI RAATTY 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 105, 124
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 124
BbvI GCAGC 4 cut(s) 147, 150, 166, 169
BisI GCNGC 4 cut(s) 136, 139, 180, 183
BlsI GCNGC 4 cut(s) 137, 140, 181, 184
Bme18I GGWCC 1 cut(s) 124
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 2 cut(s) 105, 124
BmiI GGNNCC 1 cut(s) 106
BmrI ACTGGG 1 cut(s) 197
BmuI ACTGGG 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 113
BsaAI YACGTR 1 cut(s) 131
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bse1I ACTGG 1 cut(s) 203
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 3 cut(s) 36, 39, 61
BseXI GCAGC 4 cut(s) 147, 150, 166, 169
BshFI GGCC 1 cut(s) 107
BsiHKCI CYCGRG 1 cut(s) 186
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 186
BspANI GGCC 1 cut(s) 107
BspLI GGNNCC 1 cut(s) 106
BsrI ACTGG 1 cut(s) 203
Bst6I CTCTTC 1 cut(s) 93
BstBAI YACGTR 1 cut(s) 131
BstC8I GCNNGC 2 cut(s) 149, 153
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstSNI TACGTA 1 cut(s) 131
BstV1I GCAGC 4 cut(s) 147, 150, 166, 169
BsuRI GGCC 1 cut(s) 107
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 2 cut(s) 149, 153
Cfr13I GGNCC 2 cut(s) 105, 124
Csp6I GTAC 1 cut(s) 237
CviJI RGCY 3 cut(s) 107, 192, 251
CviKI_1 RGCY 3 cut(s) 107, 192, 251
CviQI GTAC 1 cut(s) 237
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Eco105I TACGTA 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 124
Eco88I CYCGRG 1 cut(s) 186
EcoRI GAATTC 1 cut(s) 7
FaiI YATR 3 cut(s) 41, 122, 195
Fnu4HI GCNGC 4 cut(s) 136, 139, 180, 183
Fsp4HI GCNGC 4 cut(s) 136, 139, 180, 183
GluI GCNGC 4 cut(s) 136, 139, 180, 183
HaeIII GGCC 1 cut(s) 107
Hpy188III TCNNGA 1 cut(s) 92
HpyCH4IV ACGT 2 cut(s) 130, 225
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpySE526I ACGT 2 cut(s) 130, 225
LmnI GCTCC 1 cut(s) 144
LpnPI CCDG 4 cut(s) 87, 127, 133, 216
Lsp1109I GCAGC 4 cut(s) 147, 150, 166, 169
MaeII ACGT 2 cut(s) 130, 225
MboII GAAGA 1 cut(s) 80
MluCI AATT 1 cut(s) 7
MnlI CCTC 8 cut(s) 54, 57, 60, 82, 90, 96, 182, 211
Mva1269I GAATGC 1 cut(s) 214
MwoI GCNNNNNNNGC 1 cut(s) 144
NlaIV GGNNCC 1 cut(s) 106
PaeR7I CTCGAG 1 cut(s) 186
PctI GAATGC 1 cut(s) 214
PkrI GCNGC 4 cut(s) 137, 140, 181, 184
Ppu21I YACGTR 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 106
PspPI GGNCC 2 cut(s) 105, 124
PspXI VCTCGAGB 1 cut(s) 186
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SatI GCNGC 4 cut(s) 136, 139, 180, 183
Sau96I GGNCC 2 cut(s) 105, 124
SetI ASST 7 cut(s) 46, 82, 88, 133, 228, 238, 253
Sfr274I CTCGAG 1 cut(s) 186
SinI GGWCC 1 cut(s) 124
SlaI CTCGAG 1 cut(s) 186
SmlI CTYRAG 2 cut(s) 92, 186
SmoI CTYRAG 2 cut(s) 92, 186
SnaBI TACGTA 1 cut(s) 131
Sse9I AATT 1 cut(s) 7
TaiI ACGT 2 cut(s) 133, 228
TaqI TCGA 2 cut(s) 52, 187
TasI AATT 1 cut(s) 7
TscAI CASTG 1 cut(s) 210
TseI GCWGC 4 cut(s) 135, 138, 179, 182
TspRI CASTG 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 124
XapI RAATTY 1 cut(s) 7
XhoI CTCGAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.