Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002551.1

Orthogroup ID

OG0001161

Physical Location & Seq

Genomic Coordinates Reverse (-)

158048 .. 159470

Gene Structure 1423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002551.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atggttgacaattttgagagagcaaaacaacaaattagacctgaaactgcaaaggagaagaagattgatacaagttaccaaggtatatacaagaagtttattgagattatgaggagcttgcgtgcggcctctgtgccaactaagggaaaaccatttgatccttcggtgcatgaagctattgcacgagaagagtctcaagaattcccagaggggattgtcattcaagaaattcgccgtggctttttacttggtagtcgacttctaagacgagcaatggttaaagtctctatagggcctggcagtaagaaaacccctgtagccactgagaaatcatcagggtcacctgcaacagctgcttcggtagagaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GrpE

Protein Analysis

123

Amino Acids

13.63

Weight (kDa)

9.87

Isoelectric Point (pI)

57.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36390 AT1G36390
fragaria_vesca	FvH4_5g38490 FvH4_5g38490 FvH4_5g38550 FvH4_5g38590 FvH4_5g38670 FvH4_5g38670 FvH4_5g38670 FvH4_5g38670 FvH4_5g38670
malus_domestica	MD00G1103800.v1.1 MD15G1359500.v1.1
prunus_persica	Prupe.1G507100_v2.0.a1
pyrus_communis	pycom08g14880 pycom15g32190
rosa_chinensis	RchiOBHm_Chr7g0240521 RchiOBHm_Chr7g0240551 RchiOBHm_Chr7g0240561
rosa_laevigata	RLG00000000628 RLG00000000650 RLG00000000665 RLG00000007790
rosa_multiflora	Rmu_sc0001070.1_g000034 Rmu_sc0002551.1_g000025 Rmu_sc0002551.1_g000035 Rmu_sc0005071.1_g000018 Rmu_sc0008477.1_g000007 Rmu_sc0020449.1_g000001 Rmu_sc0024557.1_g000002
rosa_roxburghii	Rroxscaffold_3G00219680 Rroxscaffold_3G00219830 Rroxscaffold_3G00219840 Rroxscaffold_3G00219900
rosa_rugosa	Rorug07G0336900 Rorug07G0337300 Rorug07G0337400 Rorug07G0338300
rosa_samantha	Rh2AG294800 Rh7AG491400 Rh7AG491800 Rh7AG491900 Rh7AG492700 Rh7BG464000 Rh7BG464300 Rh7CG507400 Rh7CG507900 Rh7CG508100 Rh7CG509800 Rh7DG475200 Rh7DG475500 Rh7DG477400
rosa_wichuraiana	Rw0G013470 Rw7G041170 Rw7G041290 Rw7G041400 Rw7G041430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	352
Acc36I	ACCTGC	1 cut(s)	352
AccI	GTMKAC	1 cut(s)	256
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	1 cut(s)	152
AcsI	RAATTY	2 cut(s)	200, 228
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	3 cut(s)	117, 176, 353
AluI	AGCT	3 cut(s)	117, 176, 353
Alw26I	GTCTC	2 cut(s)	198, 289
AlwI	GGATC	1 cut(s)	152
AoxI	GGCC	2 cut(s)	126, 293
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	2 cut(s)	200, 228
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	333
BauI	CACGAG	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	340
BceAI	ACGGC	1 cut(s)	219
BciT130I	CCWGG	1 cut(s)	297
BcoDI	GTCTC	2 cut(s)	198, 289
BfmI	CTRYAG	2 cut(s)	288, 315
BfuAI	ACCTGC	1 cut(s)	352
BisI	GCNGC	2 cut(s)	126, 354
BlsI	GCNGC	2 cut(s)	127, 355
Bme1390I	CCNGG	1 cut(s)	297
BmgT120I	GGNCC	1 cut(s)	293
BmrFI	CCNGG	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	79, 235
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse3DI	GCAATG	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	79, 235
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	315
BseRI	GAGGAG	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	340
BshFI	GGCC	2 cut(s)	128, 295
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmAI	GTCTC	2 cut(s)	198, 289
BsnI	GGCC	2 cut(s)	128, 295
Bsp143I	GATC	1 cut(s)	157
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	2 cut(s)	128, 295
BspCNI	CTCAG	1 cut(s)	316
BspMI	ACCTGC	1 cut(s)	352
BspPI	GGATC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	279
BssECI	CCNNGG	2 cut(s)	79, 235
BssMI	GATC	1 cut(s)	157
BssSI	CACGAG	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	79
Bst2BI	CACGAG	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	297
Bst6I	CTCTTC	1 cut(s)	183
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstC8I	GCNNGC	2 cut(s)	119, 123
BstDEI	CTNAG	3 cut(s)	141, 263, 324
BstDSI	CCRYGG	1 cut(s)	235
BstEII	GGTNACC	1 cut(s)	339
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	2 cut(s)	198, 289
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNI	CCWGG	1 cut(s)	297
BstPI	GGTNACC	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	295
BstSFI	CTRYAG	2 cut(s)	288, 315
BstV1I	GCAGC	1 cut(s)	340
BsuRI	GGCC	2 cut(s)	128, 295
BtgI	CCRYGG	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	321
BveI	ACCTGC	1 cut(s)	352
Cac8I	GCNNGC	2 cut(s)	119, 123
Cfr13I	GGNCC	1 cut(s)	293
CviAII	CATG	1 cut(s)	170
CviJI	RGCY	7 cut(s)	117, 128, 176, 240, 295, 320, 353
CviKI_1	RGCY	7 cut(s)	117, 128, 176, 240, 295, 320, 353
DdeI	CTNAG	3 cut(s)	141, 263, 324
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	79
Eco91I	GGTNACC	1 cut(s)	339
EcoO109I	RGGNCCY	1 cut(s)	293
EcoO65I	GGTNACC	1 cut(s)	339
EcoRI	GAATTC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	1 cut(s)	173
FaiI	YATR	5 cut(s)	86, 88, 110, 171, 290
FatI	CATG	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	126, 354
Fsp4HI	GCNGC	2 cut(s)	126, 354
GluI	GCNGC	2 cut(s)	126, 354
HaeIII	GGCC	2 cut(s)	128, 295
Hin1II	CATG	1 cut(s)	173
HincII	GTYRAC	2 cut(s)	7, 257
HindII	GTYRAC	2 cut(s)	7, 257
HinfI	GANTC	1 cut(s)	191
HphI	GGTGA	1 cut(s)	333
Hpy166II	GTNNAC	2 cut(s)	7, 257
Hpy188III	TCNNGA	2 cut(s)	197, 224
Hpy8I	GTNNAC	2 cut(s)	7, 257
HpyAV	CCTTC	1 cut(s)	171
HpyCH4V	TGCA	4 cut(s)	50, 169, 182, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	3 cut(s)	141, 263, 324
Hsp92II	CATG	1 cut(s)	173
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	1 cut(s)	114
LpnPI	CCDG	7 cut(s)	54, 219, 282, 309, 321, 327, 357
Lsp1109I	GCAGC	1 cut(s)	340
MaeIII	GTNAC	2 cut(s)	74, 339
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	3 cut(s)	70, 73, 200
MluCI	AATT	5 cut(s)	10, 33, 200, 228, 367
MlyI	GAGTC	1 cut(s)	200
MnlI	CCTC	3 cut(s)	105, 139, 202
MseI	TTAA	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	353
MspR9I	CCNGG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	1 cut(s)	353
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	1 cut(s)	173
NmuCI	GTSAC	1 cut(s)	339
PaqCI	CACCTGC	1 cut(s)	352
PkrI	GCNGC	2 cut(s)	127, 355
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	295
PspEI	GGTNACC	1 cut(s)	339
PspGI	CCWGG	1 cut(s)	295
PspPI	GGNCC	1 cut(s)	293
PvuII	CAGCTG	1 cut(s)	353
SalI	GTCGAC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	2 cut(s)	126, 354
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	1 cut(s)	293
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	297
SetI	ASST	6 cut(s)	43, 85, 119, 178, 346, 355
SfcI	CTRYAG	2 cut(s)	288, 315
SmlI	CTYRAG	1 cut(s)	195
SmoI	CTYRAG	1 cut(s)	195
Sse9I	AATT	5 cut(s)	10, 33, 200, 228, 367
SsiI	CCGC	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	295
StyI	CCWWGG	1 cut(s)	79
TaqI	TCGA	1 cut(s)	256
TasI	AATT	5 cut(s)	10, 33, 200, 228, 367
TauI	GCSGC	1 cut(s)	128
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	1 cut(s)	339
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	339
TspDTI	ATGAA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	328
XapI	RAATTY	2 cut(s)	200, 228
XmiI	GTMKAC	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.