Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001161

Physical Location & Seq

Genomic Coordinates Reverse (-)

54973174 .. 54974375

Gene Structure 1202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG464300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGGAGACTGATGACTCGTCCAGGATGACTTGGATTCAGGGCACTCTGTCTTCAGCCTTTGTTCCGGAGAATGGGTCTTGGAAGGGATCCCCATGGCGTATGCTTCAGGTTACATGGGATGAACCTGAAGTTCTGCAGAATGCCAAGAGGGTGAGCCCATGGCAAGTTGACTTTGTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

60

Amino Acids

6.91

Weight (kDa)

4.51

Isoelectric Point (pI)

46.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARF_AD	PF06507	1 - 59	3.3e-19	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36390 AT1G36390
fragaria_vesca	FvH4_5g38490 FvH4_5g38490 FvH4_5g38550 FvH4_5g38590 FvH4_5g38670 FvH4_5g38670 FvH4_5g38670 FvH4_5g38670 FvH4_5g38670
malus_domestica	MD00G1103800.v1.1 MD15G1359500.v1.1
prunus_persica	Prupe.1G507100_v2.0.a1
pyrus_communis	pycom08g14880 pycom15g32190
rosa_chinensis	RchiOBHm_Chr7g0240521 RchiOBHm_Chr7g0240551 RchiOBHm_Chr7g0240561
rosa_laevigata	RLG00000000628 RLG00000000650 RLG00000000665 RLG00000007790
rosa_multiflora	Rmu_sc0001070.1_g000034 Rmu_sc0002551.1_g000025 Rmu_sc0002551.1_g000035 Rmu_sc0005071.1_g000018 Rmu_sc0008477.1_g000007 Rmu_sc0020449.1_g000001 Rmu_sc0024557.1_g000002
rosa_roxburghii	Rroxscaffold_3G00219680 Rroxscaffold_3G00219830 Rroxscaffold_3G00219840 Rroxscaffold_3G00219900
rosa_rugosa	Rorug07G0336900 Rorug07G0337300 Rorug07G0337400 Rorug07G0338300
rosa_samantha	Rh2AG294800 Rh7AG491400 Rh7AG491800 Rh7AG491900 Rh7AG492700 Rh7BG464000 Rh7BG464300 Rh7CG507400 Rh7CG507900 Rh7CG508100 Rh7CG509800 Rh7DG475200 Rh7DG475500 Rh7DG477400
rosa_wichuraiana	Rw0G013470 Rw7G041170 Rw7G041290 Rw7G041400 Rw7G041430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	64
AclWI	GGATC	2 cut(s)	81, 94
AcuI	CTGAAG	3 cut(s)	36, 89, 147
AfiI	CCNNNNNNNGG	1 cut(s)	71
AjnI	CCWGG	1 cut(s)	20
AlwI	GGATC	2 cut(s)	81, 94
Aor13HI	TCCGGA	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	163
BaeGI	GKGCMC	1 cut(s)	44
BamHI	GGATCC	1 cut(s)	86
BanII	GRGCYC	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	42
BciT130I	CCWGG	1 cut(s)	22
BfmI	CTRYAG	1 cut(s)	134
Bme1390I	CCNGG	1 cut(s)	22
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	22
BpiI	GAAGAC	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	92, 158
BsaWI	WCCGGW	1 cut(s)	64
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
BseAI	TCCGGA	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	2 cut(s)	92, 158
BseGI	GGATG	2 cut(s)	30, 124
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseSI	GKGCMC	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	44, 158
Bsp13I	TCCGGA	1 cut(s)	64
Bsp143I	GATC	1 cut(s)	86
Bsp19I	CCATGG	2 cut(s)	92, 158
BspEI	TCCGGA	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	88
BspMAI	CTGCAG	1 cut(s)	138
BspPI	GGATC	2 cut(s)	81, 94
BssECI	CCNNGG	2 cut(s)	92, 158
BssMI	GATC	1 cut(s)	86
BssT1I	CCWWGG	2 cut(s)	92, 158
Bst2UI	CCWGG	1 cut(s)	22
BstDSI	CCRYGG	2 cut(s)	92, 158
BstF5I	GGATG	2 cut(s)	30, 124
BstKTI	GATC	1 cut(s)	89
BstMBI	GATC	1 cut(s)	86
BstNI	CCWGG	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	20
BstSFI	CTRYAG	1 cut(s)	134
BstSLI	GKGCMC	1 cut(s)	44
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BtgI	CCRYGG	2 cut(s)	92, 158
BtsCI	GGATG	2 cut(s)	30, 124
CviAII	CATG	3 cut(s)	93, 114, 159
CviJI	RGCY	2 cut(s)	56, 156
CviKI_1	RGCY	2 cut(s)	56, 156
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
Eco130I	CCWWGG	2 cut(s)	92, 158
Eco24I	GRGCYC	1 cut(s)	158
Eco57I	CTGAAG	3 cut(s)	36, 89, 147
EcoRII	CCWGG	1 cut(s)	20
EcoT14I	CCWWGG	2 cut(s)	92, 158
EcoT38I	GRGCYC	1 cut(s)	158
ErhI	CCWWGG	2 cut(s)	92, 158
FaeI	CATG	3 cut(s)	96, 117, 162
FaiI	YATR	5 cut(s)	94, 101, 115, 160, 181
FatI	CATG	3 cut(s)	92, 113, 158
FokI	GGATG	2 cut(s)	37, 131
FriOI	GRGCYC	1 cut(s)	158
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	3 cut(s)	96, 117, 162
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	2 cut(s)	14, 34
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	76
HpyCH4V	TGCA	2 cut(s)	136, 179
Hsp92II	CATG	3 cut(s)	96, 117, 162
Kpn2I	TCCGGA	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	86
LpnPI	CCDG	6 cut(s)	7, 23, 34, 78, 92, 138
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MboII	GAAGA	1 cut(s)	42
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	2 cut(s)	44, 158
MlyI	GAGTC	1 cut(s)	8
MnlI	CCTC	1 cut(s)	141
MroI	TCCGGA	1 cut(s)	64
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	22
Mva1269I	GAATGC	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	22
NcoI	CCATGG	2 cut(s)	92, 158
NdeII	GATC	1 cut(s)	86
NlaIII	CATG	3 cut(s)	96, 117, 162
NlaIV	GGNNCC	1 cut(s)	88
PctI	GAATGC	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	34
PfoI	TCCNGGA	1 cut(s)	20
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	88
PstI	CTGCAG	1 cut(s)	138
PsuI	RGATCY	1 cut(s)	86
Sau3AI	GATC	1 cut(s)	86
SchI	GAGTC	1 cut(s)	8
ScrFI	CCNGG	1 cut(s)	22
SduI	GDGCHC	2 cut(s)	44, 158
SetI	ASST	2 cut(s)	111, 127
SfcI	CTRYAG	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	20
StyI	CCWWGG	2 cut(s)	92, 158
TfiI	GAWTC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.