Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001161

Physical Location & Seq

Genomic Coordinates Forward (+)

2020148 .. 2023324

Gene Structure 3177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00219830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCGAATTCGTTGTTTATCCCAAACAACTACTTCCTCATACCTCCTCCTCGTGTTTCTGCTTCCTTCTCCTCAAAACCCATTGCTCCTCCTCCTCCTCAACCTCTTCTAGGCTCTTCGCCGCCAACTCTTCCCCCGTCGTTTTACATAGCCGGACCCCTAGCAGACGTGTCTCTGAACGCAAAAGAGGATAATGTAGATTCTAGTGGAGCAGATCAACAACATTTTCCCAGTTTGAGGACCCTCCTTAAAGTTTACAAGGATGCTATTTTCAATGAAGATGAAAAGACTGTATCCGAAATTGAGGCAAGGATAGAAGTAATAGAAAATAAGCAGAATGAATTAGTCCAGAAAGTATCATCTATATCTGCAGAGGAGCCGAGGACCGGTGGATCACTTTTTGTTATTAACCTTACCGAACTTTTAGATTTTCGTCCAAATAGATCTATCTTAAGGCGGAACATTGATGAAGTTGCGACTTTCAACGCTTTCGTTTGGACAGCAGATTGTAGATCCGATCGGAGTTGTGCAGTGATTGGAACCAATCTGGGAGCTGCTTCGGTGGATCCGGAACCGGCGATTGTAACGGTTGATGTTCCCGAGAAACGGGAAGGATTTTTTGCAAGACATGCTAGTCGGAGAATACGGCACTCACCTTTGGATAACACTCTTGGAAAATCTAGTGAAAAATGGTTCAAGCTTTCGGAAATATACATCCTTCTCATACCACAAAAATGCCTTCATCTATTGCATGGTAAAGCTCGTATGACCATCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0006139 GO:0006396 GO:0006464 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0019538 GO:0030532 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0080008 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

259

Amino Acids

28.67

Weight (kDa)

6.54

Isoelectric Point (pI)

60.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36390 AT1G36390
fragaria_vesca	FvH4_5g38490 FvH4_5g38490 FvH4_5g38550 FvH4_5g38590 FvH4_5g38670 FvH4_5g38670 FvH4_5g38670 FvH4_5g38670 FvH4_5g38670
malus_domestica	MD00G1103800.v1.1 MD15G1359500.v1.1
prunus_persica	Prupe.1G507100_v2.0.a1
pyrus_communis	pycom08g14880 pycom15g32190
rosa_chinensis	RchiOBHm_Chr7g0240521 RchiOBHm_Chr7g0240551 RchiOBHm_Chr7g0240561
rosa_laevigata	RLG00000000628 RLG00000000650 RLG00000000665 RLG00000007790
rosa_multiflora	Rmu_sc0001070.1_g000034 Rmu_sc0002551.1_g000025 Rmu_sc0002551.1_g000035 Rmu_sc0005071.1_g000018 Rmu_sc0008477.1_g000007 Rmu_sc0020449.1_g000001 Rmu_sc0024557.1_g000002
rosa_roxburghii	Rroxscaffold_3G00219680 Rroxscaffold_3G00219830 Rroxscaffold_3G00219840 Rroxscaffold_3G00219900
rosa_rugosa	Rorug07G0336900 Rorug07G0337300 Rorug07G0337400 Rorug07G0338300
rosa_samantha	Rh2AG294800 Rh7AG491400 Rh7AG491800 Rh7AG491900 Rh7AG492700 Rh7BG464000 Rh7BG464300 Rh7CG507400 Rh7CG507900 Rh7CG508100 Rh7CG509800 Rh7DG475200 Rh7DG475500 Rh7DG477400
rosa_wichuraiana	Rw0G013470 Rw7G041170 Rw7G041290 Rw7G041400 Rw7G041430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	633
AccIII	TCCGGA	1 cut(s)	568
AciI	CCGC	2 cut(s)	122, 457
AclWI	GGATC	4 cut(s)	400, 507, 560, 573
AcsI	RAATTY	1 cut(s)	7
AfiI	CCNNNNNNNGG	4 cut(s)	110, 237, 386, 606
AflII	CTTAAG	1 cut(s)	451
AflIII	ACRYGT	1 cut(s)	168
AgeI	ACCGGT	1 cut(s)	386
AgsI	TTSAA	3 cut(s)	274, 484, 697
AjiI	CACGTC	1 cut(s)	169
AluBI	AGCT	3 cut(s)	554, 700, 761
AluI	AGCT	3 cut(s)	554, 700, 761
Alw26I	GTCTC	1 cut(s)	177
AlwI	GGATC	4 cut(s)	400, 507, 560, 573
Ama87I	CYCGRG	1 cut(s)	599
Aor13HI	TCCGGA	1 cut(s)	568
ApeKI	GCWGC	1 cut(s)	554
ApoI	RAATTY	1 cut(s)	7
AsiGI	ACCGGT	1 cut(s)	386
AspS9I	GGNCC	3 cut(s)	155, 240, 384
AsuHPI	GGTGA	1 cut(s)	645
AvaI	CYCGRG	1 cut(s)	599
AvaII	GGWCC	3 cut(s)	155, 240, 384
BamHI	GGATCC	1 cut(s)	565
BauI	CACGAG	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	1 cut(s)	779
BceAI	ACGGC	1 cut(s)	662
BciVI	GTATCC	1 cut(s)	304
BcoDI	GTCTC	1 cut(s)	177
BfaI	CTAG	5 cut(s)	110, 161, 204, 633, 681
BfmI	CTRYAG	1 cut(s)	369
BfrI	CTTAAG	1 cut(s)	451
BfuI	GTATCC	1 cut(s)	304
BglII	AGATCT	1 cut(s)	443
BisI	GCNGC	2 cut(s)	122, 555
BlsI	GCNGC	2 cut(s)	123, 556
Bme18I	GGWCC	3 cut(s)	155, 240, 384
BmeT110I	CYCGRG	1 cut(s)	599
BmgBI	CACGTC	1 cut(s)	169
BmgT120I	GGNCC	3 cut(s)	155, 240, 384
BmiI	GGNNCC	6 cut(s)	157, 242, 378, 541, 567, 573
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	1 cut(s)	253
BmuI	ACTGGG	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	380
BsaWI	WCCGGW	2 cut(s)	386, 568
Bsc4I	CCNNNNNNNGG	4 cut(s)	110, 237, 386, 606
Bse118I	RCCGGY	2 cut(s)	386, 574
Bse1I	ACTGG	1 cut(s)	231
Bse3DI	GCAATG	1 cut(s)	81
BseAI	TCCGGA	1 cut(s)	568
BseDI	CCNNGG	1 cut(s)	380
BseGI	GGATG	2 cut(s)	268, 714
BseLI	CCNNNNNNNGG	4 cut(s)	110, 237, 386, 606
BseMI	GCAATG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	231
BseRI	GAGGAG	8 cut(s)	36, 39, 61, 78, 81, 84, 87, 389
BseXI	GCAGC	1 cut(s)	541
BsgI	GTGCAG	1 cut(s)	549
Bsh1285I	CGRYCG	1 cut(s)	520
BshTI	ACCGGT	1 cut(s)	386
BsiEI	CGRYCG	1 cut(s)	520
BsiHKCI	CYCGRG	1 cut(s)	599
BsiSI	CCGG	4 cut(s)	153, 387, 569, 575
BslI	CCNNNNNNNGG	4 cut(s)	110, 237, 386, 606
BsmAI	GTCTC	1 cut(s)	177
BsoBI	CYCGRG	1 cut(s)	599
Bsp13I	TCCGGA	1 cut(s)	568
Bsp143I	GATC	6 cut(s)	214, 392, 443, 512, 517, 565
BspACI	CCGC	2 cut(s)	122, 457
BspEI	TCCGGA	1 cut(s)	568
BspLI	GGNNCC	6 cut(s)	157, 242, 378, 541, 567, 573
BspMAI	CTGCAG	1 cut(s)	373
BspPI	GGATC	4 cut(s)	400, 507, 560, 573
BspQI	GCTCTTC	1 cut(s)	121
BspTI	CTTAAG	1 cut(s)	451
BsrDI	GCAATG	1 cut(s)	81
BsrFI	RCCGGY	2 cut(s)	386, 574
BsrI	ACTGG	1 cut(s)	231
BssAI	RCCGGY	2 cut(s)	386, 574
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	6 cut(s)	214, 392, 443, 512, 517, 565
BssSI	CACGAG	1 cut(s)	51
Bst2BI	CACGAG	1 cut(s)	51
Bst4CI	ACNGT	2 cut(s)	292, 589
Bst6I	CTCTTC	3 cut(s)	111, 121, 135
BstAFI	CTTAAG	1 cut(s)	451
BstAPI	GCANNNNNTGC	1 cut(s)	629
BstENI	CCTNNNNNAGG	1 cut(s)	108
BstF5I	GGATG	2 cut(s)	268, 714
BstKTI	GATC	6 cut(s)	217, 395, 446, 515, 520, 568
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	6 cut(s)	214, 392, 443, 512, 517, 565
BstMCI	CGRYCG	1 cut(s)	520
BstMWI	GCNNNNNNNGC	1 cut(s)	629
BstNSI	RCATGY	1 cut(s)	632
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	541
BstX2I	RGATCY	3 cut(s)	443, 512, 565
BstYI	RGATCY	3 cut(s)	443, 512, 565
BsuI	GTATCC	1 cut(s)	304
BtgZI	GCGATG	1 cut(s)	757
BtrI	CACGTC	1 cut(s)	169
BtsCI	GGATG	2 cut(s)	268, 714
BtsI	GCAGTG	1 cut(s)	537
BtsIMutI	CAGTG	1 cut(s)	537
Cfr10I	RCCGGY	2 cut(s)	386, 574
Cfr13I	GGNCC	3 cut(s)	155, 240, 384
CspAI	ACCGGT	1 cut(s)	386
CviAII	CATG	2 cut(s)	629, 752
CviJI	RGCY	6 cut(s)	114, 152, 379, 554, 700, 761
CviKI_1	RGCY	6 cut(s)	114, 152, 379, 554, 700, 761
DpnI	GATC	6 cut(s)	216, 394, 445, 514, 519, 567
DpnII	GATC	6 cut(s)	214, 392, 443, 512, 517, 565
DrdI	GACNNNNNNGTC	1 cut(s)	633
DseDI	GACNNNNNNGTC	1 cut(s)	633
Eam1104I	CTCTTC	3 cut(s)	111, 121, 135
EarI	CTCTTC	3 cut(s)	111, 121, 135
EciI	GGCGGA	1 cut(s)	472
Eco47I	GGWCC	3 cut(s)	155, 240, 384
Eco88I	CYCGRG	1 cut(s)	599
EcoNI	CCTNNNNNAGG	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	240
EcoRI	GAATTC	1 cut(s)	7
FaeI	CATG	2 cut(s)	632, 755
FaiI	YATR	9 cut(s)	41, 149, 365, 630, 712, 725, 753, 767, 778
FatI	CATG	2 cut(s)	628, 751
Fnu4HI	GCNGC	2 cut(s)	122, 555
FokI	GGATG	2 cut(s)	275, 701
Fsp4HI	GCNGC	2 cut(s)	122, 555
FspBI	CTAG	5 cut(s)	110, 161, 204, 633, 681
GluI	GCNGC	2 cut(s)	122, 555
HapII	CCGG	4 cut(s)	153, 387, 569, 575
Hin1II	CATG	2 cut(s)	632, 755
HindIII	AAGCTT	1 cut(s)	698
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	4 cut(s)	153, 387, 569, 575
HphI	GGTGA	1 cut(s)	645
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	6 cut(s)	177, 298, 517, 522, 639, 706
Hpy188III	TCNNGA	3 cut(s)	349, 569, 599
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	4 cut(s)	76, 605, 728, 749
HpyCH4III	ACNGT	2 cut(s)	292, 589
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	4 cut(s)	371, 530, 623, 751
HpyF10VI	GCNNNNNNNGC	1 cut(s)	629
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	632, 755
Kpn2I	TCCGGA	1 cut(s)	568
Kzo9I	GATC	6 cut(s)	214, 392, 443, 512, 517, 565
LguI	GCTCTTC	1 cut(s)	121
LmnI	GCTCC	4 cut(s)	91, 209, 376, 551
LpnPI	CCDG	7 cut(s)	166, 244, 362, 400, 533, 582, 588
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	5 cut(s)	110, 161, 204, 633, 681
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	583
MalI	GATC	6 cut(s)	216, 394, 445, 514, 519, 567
MboI	GATC	6 cut(s)	214, 392, 443, 512, 517, 565
MboII	GAAGA	4 cut(s)	98, 108, 122, 290
MflI	RGATCY	3 cut(s)	443, 512, 565
MluCI	AATT	3 cut(s)	7, 300, 341
MmeI	TCCRAC	1 cut(s)	617
MroI	TCCGGA	1 cut(s)	568
MseI	TTAA	3 cut(s)	249, 408, 452
MslI	CAYNNNNRTG	1 cut(s)	733
MspCI	CTTAAG	1 cut(s)	451
MspI	CCGG	4 cut(s)	153, 387, 569, 575
MwoI	GCNNNNNNNGC	1 cut(s)	629
NdeII	GATC	6 cut(s)	214, 392, 443, 512, 517, 565
NlaIII	CATG	2 cut(s)	632, 755
NlaIV	GGNNCC	6 cut(s)	157, 242, 378, 541, 567, 573
NmeAIII	GCCGAG	1 cut(s)	405
NspI	RCATGY	1 cut(s)	632
PciSI	GCTCTTC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	200
PinAI	ACCGGT	1 cut(s)	386
PkrI	GCNGC	2 cut(s)	123, 556
Ple19I	CGATCG	1 cut(s)	520
PpuMI	RGGWCCY	1 cut(s)	240
Psp5II	RGGWCCY	1 cut(s)	240
PspN4I	GGNNCC	6 cut(s)	157, 242, 378, 541, 567, 573
PspPI	GGNCC	3 cut(s)	155, 240, 384
PspPPI	RGGWCCY	1 cut(s)	240
PstI	CTGCAG	1 cut(s)	373
PsuI	RGATCY	3 cut(s)	443, 512, 565
PvuI	CGATCG	1 cut(s)	520
RseI	CAYNNNNRTG	1 cut(s)	733
SapI	GCTCTTC	1 cut(s)	121
SaqAI	TTAA	3 cut(s)	249, 408, 452
SatI	GCNGC	2 cut(s)	122, 555
Sau3AI	GATC	6 cut(s)	214, 392, 443, 512, 517, 565
Sau96I	GGNCC	3 cut(s)	155, 240, 384
SetI	ASST	8 cut(s)	46, 106, 171, 414, 556, 658, 702, 763
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	369
SinI	GGWCC	3 cut(s)	155, 240, 384
SmiMI	CAYNNNNRTG	1 cut(s)	733
SmlI	CTYRAG	1 cut(s)	451
SmoI	CTYRAG	1 cut(s)	451
Sse9I	AATT	3 cut(s)	7, 300, 341
SsiI	CCGC	2 cut(s)	122, 457
SspMI	CTAG	5 cut(s)	110, 161, 204, 633, 681
TaaI	ACNGT	2 cut(s)	292, 589
TaiI	ACGT	1 cut(s)	171
TasI	AATT	3 cut(s)	7, 300, 341
TauI	GCSGC	1 cut(s)	124
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	3 cut(s)	249, 408, 452
Tru9I	TTAA	3 cut(s)	249, 408, 452
TscAI	CASTG	1 cut(s)	537
TseI	GCWGC	1 cut(s)	554
TspDTI	ATGAA	5 cut(s)	291, 297, 354, 483, 731
TspRI	CASTG	1 cut(s)	537
Vha464I	CTTAAG	1 cut(s)	451
VpaK11BI	GGWCC	3 cut(s)	155, 240, 384
XagI	CCTNNNNNAGG	1 cut(s)	108
XapI	RAATTY	1 cut(s)	7
XceI	RCATGY	1 cut(s)	632
XspI	CTAG	5 cut(s)	110, 161, 204, 633, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.