Rh7BG464000

Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001161
Physical Location & Seq
Reverse (-)
54959724 .. 54963324
3601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG464000.1

Sequence Viewer

Length: 870 bp
ATGGCGAACTCGTTGTTTATCCCAAACAACTACTTCATCATACCTCCTCCTCGCGTTTCTGCTTCCTTCTCCTCAAAACCCATTGCTCCTCCTCCTCTACCTCTTCTAGGCTTTTCAGTCACCAACTCTTCCCCCATAGTTTTACATAGCCGCAGCAGTAGCAGGCGTGCCTCGTTTTTCAAATCTCATCTTTCTGCCCGAGGCTCTGTTCCCCCAGTGAATGCCAAAGAGGATAATGTAGATTCTAGTGGAGCAGATCAACAACATTTGCCCAGTTTGAGGACCCTCCTTAAAGTTTACAAGGATGCTATTTTCAATGAAGATGAAAAGACTGTATCCGAAATTGAGGCAAGGATAGAAGTAATAGAAAATAAGCAGAATGAATTAGTCCAGAAAGTATCATCTATATCTGCAGAGGTAACATCAGGGAAGGAAAAGCTTATCCGCTTGCAAGCAGATTTTGATAATTGTAGAAAAAGATTTGAGAAAGAGAGACTAACTGTGAGGACTGATGCTCAAGGAGAAGTAATTGAGAGCCTTTTGCCCATGGTTGACAATTTTGAGAGAGCAAAACAACAGATTAGACCTGAAACTGAAAAGGAGAAGAAGATTGATACAAGTTACCAAGGTATATACAAGCAATTTGTTGAGATTATGAGGAACTTGCGTGTGGCCTCTGTGCCAACTAAGGGAAAGCCCTTTGATCCTTCGGTAAGTGACAGCTTTTGGTTCAACTTATATTCTAGATATTTAATTATGCTGCATTGCTTACTTCTTTGCTTGCTTATTCATTGTGGTGAACCAGTTGATGAACACAAAGAAATCTTAAAAACAAATCCTGATTATGTTTACTTTTTGGCGATTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GrpE

Protein Analysis

289

Amino Acids

32.86

Weight (kDa)

8.54

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GrpE PF01025 122 - 238 7.7e-21 GrpE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 54
AciI CCGC 2 cut(s) 151, 445
AclWI GGATC 1 cut(s) 698
AfiI CCNNNNNNNGG 3 cut(s) 107, 279, 689
AgsI TTSAA 3 cut(s) 181, 316, 733
AluBI AGCT 2 cut(s) 439, 723
AluI AGCT 2 cut(s) 439, 723
Alw26I GTCTC 1 cut(s) 487
AlwI GGATC 1 cut(s) 698
Ama87I CYCGRG 1 cut(s) 198
AoxI GGCC 1 cut(s) 672
ApeKI GCWGC 2 cut(s) 153, 760
AspS9I GGNCC 1 cut(s) 282
AsuHPI GGTGA 2 cut(s) 112, 809
AvaI CYCGRG 1 cut(s) 198
AvaII GGWCC 1 cut(s) 282
BbvI GCAGC 2 cut(s) 165, 747
BciVI GTATCC 1 cut(s) 346
BcoDI GTCTC 1 cut(s) 487
BfaI CTAG 3 cut(s) 107, 246, 744
BfmI CTRYAG 1 cut(s) 411
BfuI GTATCC 1 cut(s) 346
BisI GCNGC 3 cut(s) 151, 154, 761
BlsI GCNGC 3 cut(s) 152, 155, 762
Bme18I GGWCC 1 cut(s) 282
BmeT110I CYCGRG 1 cut(s) 198
BmgT120I GGNCC 1 cut(s) 282
BmiI GGNNCC 1 cut(s) 284
BmrI ACTGGG 2 cut(s) 209, 267
BmsI GCATC 2 cut(s) 295, 502
BmuI ACTGGG 2 cut(s) 209, 267
BpuEI CTTGAG 1 cut(s) 501
BsaJI CCNNGG 3 cut(s) 199, 546, 625
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 279, 689
Bse1I ACTGG 3 cut(s) 215, 273, 803
Bse3DI GCAATG 2 cut(s) 81, 763
BseDI CCNNGG 3 cut(s) 199, 546, 625
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 3 cut(s) 107, 279, 689
BseMI GCAATG 2 cut(s) 81, 763
BseNI ACTGG 3 cut(s) 215, 273, 803
BseRI GAGGAG 6 cut(s) 36, 39, 61, 78, 81, 84
BseXI GCAGC 2 cut(s) 165, 747
Bsh1236I CGCG 1 cut(s) 54
BshFI GGCC 1 cut(s) 674
BsiHKCI CYCGRG 1 cut(s) 198
BslI CCNNNNNNNGG 3 cut(s) 107, 279, 689
BsmAI GTCTC 1 cut(s) 487
BsmI GAATGC 1 cut(s) 226
BsnI GGCC 1 cut(s) 674
BsoBI CYCGRG 1 cut(s) 198
Bsp143I GATC 2 cut(s) 256, 703
Bsp19I CCATGG 1 cut(s) 546
BspACI CCGC 2 cut(s) 151, 445
BspANI GGCC 1 cut(s) 674
BspFNI CGCG 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 284
BspMAI CTGCAG 1 cut(s) 415
BspPI GGATC 1 cut(s) 698
BsrDI GCAATG 2 cut(s) 81, 763
BsrI ACTGG 3 cut(s) 215, 273, 803
BssECI CCNNGG 3 cut(s) 199, 546, 625
BssMI GATC 2 cut(s) 256, 703
BssT1I CCWWGG 2 cut(s) 546, 625
Bst4CI ACNGT 2 cut(s) 334, 502
Bst6I CTCTTC 2 cut(s) 108, 133
BstC8I GCNNGC 5 cut(s) 164, 168, 449, 453, 782
BstDEI CTNAG 1 cut(s) 687
BstDSI CCRYGG 1 cut(s) 546
BstENI CCTNNNNNAGG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 310
BstFNI CGCG 1 cut(s) 54
BstKTI GATC 2 cut(s) 259, 706
BstMAI GTCTC 1 cut(s) 487
BstMBI GATC 2 cut(s) 256, 703
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstSFI CTRYAG 1 cut(s) 411
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 165, 747
BsuI GTATCC 1 cut(s) 346
BsuRI GGCC 1 cut(s) 674
BtgI CCRYGG 1 cut(s) 546
BtsCI GGATG 1 cut(s) 310
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 5 cut(s) 164, 168, 449, 453, 782
Cfr13I GGNCC 1 cut(s) 282
CviAII CATG 1 cut(s) 547
CviJI RGCY 8 cut(s) 111, 150, 204, 439, 537, 674, 697, 723
CviKI_1 RGCY 8 cut(s) 111, 150, 204, 439, 537, 674, 697, 723
DdeI CTNAG 1 cut(s) 687
DpnI GATC 2 cut(s) 258, 705
DpnII GATC 2 cut(s) 256, 703
Eam1104I CTCTTC 2 cut(s) 108, 133
EarI CTCTTC 2 cut(s) 108, 133
Eco130I CCWWGG 2 cut(s) 546, 625
Eco47I GGWCC 1 cut(s) 282
Eco88I CYCGRG 1 cut(s) 198
EcoNI CCTNNNNNAGG 1 cut(s) 105
EcoO109I RGGNCCY 1 cut(s) 282
EcoT14I CCWWGG 2 cut(s) 546, 625
ErhI CCWWGG 2 cut(s) 546, 625
FaeI CATG 1 cut(s) 550
FatI CATG 1 cut(s) 546
Fnu4HI GCNGC 3 cut(s) 151, 154, 761
FokI GGATG 1 cut(s) 317
Fsp4HI GCNGC 3 cut(s) 151, 154, 761
FspBI CTAG 3 cut(s) 107, 246, 744
GluI GCNGC 3 cut(s) 151, 154, 761
HaeIII GGCC 1 cut(s) 674
Hin1II CATG 1 cut(s) 550
HincII GTYRAC 1 cut(s) 553
HindII GTYRAC 1 cut(s) 553
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 1 cut(s) 242
HphI GGTGA 2 cut(s) 112, 809
Hpy166II GTNNAC 4 cut(s) 298, 553, 800, 850
Hpy188I TCNGA 1 cut(s) 340
Hpy188III TCNNGA 3 cut(s) 391, 744, 839
Hpy8I GTNNAC 4 cut(s) 298, 553, 800, 850
HpyAV CCTTC 3 cut(s) 76, 424, 717
HpyCH4III ACNGT 2 cut(s) 334, 502
HpyCH4V TGCA 3 cut(s) 413, 451, 763
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 1 cut(s) 687
Hsp92II CATG 1 cut(s) 550
Kzo9I GATC 2 cut(s) 256, 703
LmnI GCTCC 2 cut(s) 91, 251
LpnPI CCDG 8 cut(s) 148, 228, 286, 404, 411, 600, 816, 852
Lsp1109I GCAGC 2 cut(s) 165, 747
LweI GCATC 2 cut(s) 295, 502
MaeI CTAG 3 cut(s) 107, 246, 744
MaeIII GTNAC 4 cut(s) 118, 418, 620, 716
MalI GATC 2 cut(s) 258, 705
MboI GATC 2 cut(s) 256, 703
MboII GAAGA 5 cut(s) 95, 120, 332, 616, 619
MluCI AATT 7 cut(s) 342, 383, 466, 528, 556, 641, 753
MseI TTAA 4 cut(s) 291, 752, 827, 864
MslI CAYNNNNRTG 1 cut(s) 795
Mva1269I GAATGC 1 cut(s) 226
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 159
NcoI CCATGG 1 cut(s) 546
NdeII GATC 2 cut(s) 256, 703
NlaIII CATG 1 cut(s) 550
NlaIV GGNNCC 1 cut(s) 284
NmuCI GTSAC 2 cut(s) 118, 716
PctI GAATGC 1 cut(s) 226
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 3 cut(s) 152, 155, 762
PpuMI RGGWCCY 1 cut(s) 282
Psp5II RGGWCCY 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 284
PspPI GGNCC 1 cut(s) 282
PspPPI RGGWCCY 1 cut(s) 282
PstI CTGCAG 1 cut(s) 415
RseI CAYNNNNRTG 1 cut(s) 795
SaqAI TTAA 4 cut(s) 291, 752, 827, 864
SatI GCNGC 3 cut(s) 151, 154, 761
Sau3AI GATC 2 cut(s) 256, 703
Sau96I GGNCC 1 cut(s) 282
SetI ASST 7 cut(s) 46, 103, 420, 441, 589, 631, 725
SfaNI GCATC 2 cut(s) 295, 502
SfcI CTRYAG 1 cut(s) 411
SinI GGWCC 1 cut(s) 282
SmiMI CAYNNNNRTG 1 cut(s) 795
SmlI CTYRAG 1 cut(s) 516
SmoI CTYRAG 1 cut(s) 516
Sse9I AATT 7 cut(s) 342, 383, 466, 528, 556, 641, 753
SsiI CCGC 2 cut(s) 151, 445
SspMI CTAG 3 cut(s) 107, 246, 744
StyI CCWWGG 2 cut(s) 546, 625
TaaI ACNGT 2 cut(s) 334, 502
TasI AATT 7 cut(s) 342, 383, 466, 528, 556, 641, 753
TauI GCSGC 1 cut(s) 153
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 4 cut(s) 291, 752, 827, 864
Tru9I TTAA 4 cut(s) 291, 752, 827, 864
TscAI CASTG 1 cut(s) 222
TseFI GTSAC 2 cut(s) 118, 716
TseI GCWGC 2 cut(s) 153, 760
Tsp45I GTSAC 2 cut(s) 118, 716
TspDTI ATGAA 6 cut(s) 25, 333, 339, 396, 779, 825
TspRI CASTG 1 cut(s) 222
VpaK11BI GGWCC 1 cut(s) 282
XagI CCTNNNNNAGG 1 cut(s) 105
XbaI TCTAGA 1 cut(s) 743
XspI CTAG 3 cut(s) 107, 246, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.