RchiOBHm_Chr7g0240521

Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001161
Physical Location & Seq
Reverse (-)
66493437 .. 66496968
3532 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21556

Sequence Viewer

Length: 915 bp
ATGACGAACTTGTTGTTTATCCCAAACAACTACTTGGTCATACCTCCTCCTCGCGTTTCTGCTTCTTCCTTCTCCTCAAAACCCATTGCTCCTCAACCTCTTCTAGGCTTTTCAGTAGCCAACTCTTCCCCCATAGTTTTACATAGCCGCAGCAGTAGCAGGCGCGCCTTGTTTTTCAAATATCATCTTTCTGCTCGAGGCTCTGTTCCCCCAGTGAATGCAAAAGAGGATAATGTAGATTCTAGTGGAGCAGATCAACAACATTTGCCTAGTTTGAGGACCCTCCTTAAAGTTTACAAGGATGCTATTTTCAATGGAGATGAAAAGACTGTATCCGAAATTGAGGCAAGGATGGAAATAATAGAAAATAAGCAGAATGAATTAGTCCAAAAAGTATCATCTATATCTGCAGAGGTAACATCAGGGAAGGAAAAGCTTATCCGCTTGCAAGCAGATTTTGATAATTGTAGAAAAAGATTTGAGAAAGAAAGACTTACCGTGAGGACTGATGCTCAAGGAGAAGTAATTGAGAGCCTTTTGCCCATGGTTGACAATTTTGAGAGAGCAAAACAACAAATTAGACCTGAAACTGAAAAGGAGAAGAAGATTGATACAAGTTACCAAGGTATATACAAGCAATTTGTTGAGATTATGAGGAGCTTGCGTGTGGCCTCTGTGCCAACTAAGGGAAAACCCTTTGATCCTTCGGTGCATGAAGCTATTGCAAGAGAAGAGTCTCAAGAATTTCCTGAGGGAATTGTCATTCAAGAGATTCGCCGTGGCTTTTTACTTGGAGGTAGACTTCTAAGACCAGCAATGGTTAAAGTCTCTATAGGGCCGGGCAGAAAGAAATCCCCTGTGGCCACTGAGAAATCATCAGGGTCACCTGCAACAGCCGCTTCGGTAGAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GrpE

Protein Analysis

304

Amino Acids

33.8

Weight (kDa)

9.45

Isoelectric Point (pI)

53.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GrpE PF01025 121 - 277 5.8e-40 GrpE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 895
Acc36I ACCTGC 1 cut(s) 895
AccI GTMKAC 1 cut(s) 799
AccII CGCG 2 cut(s) 54, 165
AciI CCGC 3 cut(s) 148, 442, 897
AclWI GGATC 1 cut(s) 695
AcoI YGGCCR 1 cut(s) 861
AcsI RAATTY 1 cut(s) 743
AfiI CCNNNNNNNGG 2 cut(s) 104, 686
AgsI TTSAA 3 cut(s) 178, 313, 767
AluBI AGCT 3 cut(s) 436, 660, 719
AluI AGCT 3 cut(s) 436, 660, 719
Alw26I GTCTC 2 cut(s) 741, 832
AlwI GGATC 1 cut(s) 695
Ama87I CYCGRG 1 cut(s) 195
AoxI GGCC 3 cut(s) 669, 836, 861
ApeKI GCWGC 1 cut(s) 150
ApoI RAATTY 1 cut(s) 743
AscI GGCGCGCC 1 cut(s) 163
AspLEI GCGC 2 cut(s) 165, 167
AspS9I GGNCC 2 cut(s) 279, 836
AsuC2I CCSGG 1 cut(s) 840
AsuHPI GGTGA 1 cut(s) 876
AvaI CYCGRG 1 cut(s) 195
AvaII GGWCC 1 cut(s) 279
AxyI CCTNAGG 1 cut(s) 750
BalI TGGCCA 1 cut(s) 863
BbvI GCAGC 1 cut(s) 162
BccI CCATC 1 cut(s) 346
BceAI ACGGC 1 cut(s) 762
BciVI GTATCC 1 cut(s) 343
BcnI CCSGG 1 cut(s) 840
BcoDI GTCTC 2 cut(s) 741, 832
BfaI CTAG 3 cut(s) 104, 243, 270
BfmI CTRYAG 2 cut(s) 408, 831
BfuAI ACCTGC 1 cut(s) 895
BfuI GTATCC 1 cut(s) 343
BisI GCNGC 3 cut(s) 148, 151, 897
BlsI GCNGC 3 cut(s) 149, 152, 898
Bme1390I CCNGG 1 cut(s) 840
Bme18I GGWCC 1 cut(s) 279
BmeT110I CYCGRG 1 cut(s) 195
BmgT120I GGNCC 2 cut(s) 279, 836
BmiI GGNNCC 1 cut(s) 281
BmrFI CCNGG 1 cut(s) 840
BmrI ACTGGG 1 cut(s) 206
BmsI GCATC 2 cut(s) 292, 499
BmuI ACTGGG 1 cut(s) 206
BpuEI CTTGAG 2 cut(s) 498, 723
BpuMI CCSGG 1 cut(s) 840
BsaJI CCNNGG 3 cut(s) 543, 622, 778
BsaXI ACNNNNNCTCC 2 cut(s) 649, 679
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 686
Bse1I ACTGG 1 cut(s) 212
Bse21I CCTNAGG 1 cut(s) 750
Bse3DI GCAATG 2 cut(s) 84, 822
BseDI CCNNGG 3 cut(s) 543, 622, 778
BseGI GGATG 2 cut(s) 307, 357
BseLI CCNNNNNNNGG 2 cut(s) 104, 686
BseMI GCAATG 2 cut(s) 84, 822
BseMII CTCAG 2 cut(s) 741, 858
BseNI ACTGG 1 cut(s) 212
BsePI GCGCGC 1 cut(s) 163
BseRI GAGGAG 5 cut(s) 36, 39, 64, 81, 670
BseXI GCAGC 1 cut(s) 162
Bsh1236I CGCG 2 cut(s) 54, 165
BshFI GGCC 3 cut(s) 671, 838, 863
BsiHKCI CYCGRG 1 cut(s) 195
BsiSI CCGG 1 cut(s) 839
BslI CCNNNNNNNGG 2 cut(s) 104, 686
BsmAI GTCTC 2 cut(s) 741, 832
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 3 cut(s) 671, 838, 863
BsoBI CYCGRG 1 cut(s) 195
Bsp143I GATC 2 cut(s) 253, 700
Bsp19I CCATGG 1 cut(s) 543
BspACI CCGC 3 cut(s) 148, 442, 897
BspANI GGCC 3 cut(s) 671, 838, 863
BspCNI CTCAG 2 cut(s) 742, 859
BspFNI CGCG 2 cut(s) 54, 165
BspLI GGNNCC 1 cut(s) 281
BspMAI CTGCAG 1 cut(s) 412
BspMI ACCTGC 1 cut(s) 895
BspPI GGATC 1 cut(s) 695
BsrDI GCAATG 2 cut(s) 84, 822
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 3 cut(s) 543, 622, 778
BssHII GCGCGC 1 cut(s) 163
BssMI GATC 2 cut(s) 253, 700
BssT1I CCWWGG 2 cut(s) 543, 622
Bst4CI ACNGT 2 cut(s) 331, 499
Bst6I CTCTTC 3 cut(s) 105, 130, 726
BstC8I GCNNGC 5 cut(s) 161, 165, 446, 450, 662
BstDEI CTNAG 4 cut(s) 684, 750, 806, 867
BstDSI CCRYGG 2 cut(s) 543, 778
BstEII GGTNACC 1 cut(s) 882
BstENI CCTNNNNNAGG 1 cut(s) 102
BstF5I GGATG 2 cut(s) 307, 357
BstFNI CGCG 2 cut(s) 54, 165
BstHHI GCGC 2 cut(s) 165, 167
BstKTI GATC 2 cut(s) 256, 703
BstMAI GTCTC 2 cut(s) 741, 832
BstMBI GATC 2 cut(s) 253, 700
BstMWI GCNNNNNNNGC 2 cut(s) 156, 896
BstPI GGTNACC 1 cut(s) 882
BstSCI CCNGG 1 cut(s) 838
BstSFI CTRYAG 2 cut(s) 408, 831
BstUI CGCG 2 cut(s) 54, 165
BstV1I GCAGC 1 cut(s) 162
Bsu36I CCTNAGG 1 cut(s) 750
BsuI GTATCC 1 cut(s) 343
BsuRI GGCC 3 cut(s) 671, 838, 863
BtgI CCRYGG 2 cut(s) 543, 778
BtsCI GGATG 2 cut(s) 307, 357
BtsIMutI CAGTG 2 cut(s) 219, 864
BveI ACCTGC 1 cut(s) 895
Cac8I GCNNGC 5 cut(s) 161, 165, 446, 450, 662
CfoI GCGC 2 cut(s) 165, 167
Cfr13I GGNCC 2 cut(s) 279, 836
CviAII CATG 2 cut(s) 544, 713
DdeI CTNAG 4 cut(s) 684, 750, 806, 867
DpnI GATC 2 cut(s) 255, 702
DpnII GATC 2 cut(s) 253, 700
EaeI YGGCCR 1 cut(s) 861
Eam1104I CTCTTC 3 cut(s) 105, 130, 726
EarI CTCTTC 3 cut(s) 105, 130, 726
Eco130I CCWWGG 2 cut(s) 543, 622
Eco47I GGWCC 1 cut(s) 279
Eco81I CCTNAGG 1 cut(s) 750
Eco88I CYCGRG 1 cut(s) 195
Eco91I GGTNACC 1 cut(s) 882
EcoNI CCTNNNNNAGG 1 cut(s) 102
EcoO109I RGGNCCY 1 cut(s) 279
EcoO65I GGTNACC 1 cut(s) 882
EcoT14I CCWWGG 2 cut(s) 543, 622
ErhI CCWWGG 2 cut(s) 543, 622
FaeI CATG 2 cut(s) 547, 716
FalI AAGNNNNNCTT 2 cut(s) 477, 509
FatI CATG 2 cut(s) 543, 712
FblI GTMKAC 1 cut(s) 799
Fnu4HI GCNGC 3 cut(s) 148, 151, 897
FokI GGATG 2 cut(s) 314, 364
Fsp4HI GCNGC 3 cut(s) 148, 151, 897
FspBI CTAG 3 cut(s) 104, 243, 270
GlaI GCGC 2 cut(s) 164, 166
GluI GCNGC 3 cut(s) 148, 151, 897
HaeIII GGCC 3 cut(s) 671, 838, 863
HapII CCGG 1 cut(s) 839
HhaI GCGC 2 cut(s) 165, 167
Hin1II CATG 2 cut(s) 547, 716
Hin6I GCGC 2 cut(s) 163, 165
HinP1I GCGC 2 cut(s) 163, 165
HincII GTYRAC 1 cut(s) 550
HindII GTYRAC 1 cut(s) 550
HindIII AAGCTT 1 cut(s) 434
HinfI GANTC 3 cut(s) 239, 734, 772
HpaII CCGG 1 cut(s) 839
HphI GGTGA 1 cut(s) 876
Hpy166II GTNNAC 3 cut(s) 295, 550, 800
Hpy188I TCNGA 1 cut(s) 337
Hpy188III TCNNGA 3 cut(s) 740, 749, 767
Hpy8I GTNNAC 3 cut(s) 295, 550, 800
HpyAV CCTTC 3 cut(s) 79, 421, 714
HpyCH4III ACNGT 2 cut(s) 331, 499
HpyCH4V TGCA 6 cut(s) 221, 410, 448, 712, 725, 890
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 896
HpyF3I CTNAG 4 cut(s) 684, 750, 806, 867
Hsp92II CATG 2 cut(s) 547, 716
HspAI GCGC 2 cut(s) 163, 165
Kzo9I GATC 2 cut(s) 253, 700
LmnI GCTCC 3 cut(s) 94, 248, 657
Lsp1109I GCAGC 1 cut(s) 162
LweI GCATC 2 cut(s) 292, 499
MaeI CTAG 3 cut(s) 104, 243, 270
MaeIII GTNAC 3 cut(s) 415, 617, 882
MalI GATC 2 cut(s) 255, 702
MboI GATC 2 cut(s) 253, 700
MboII GAAGA 6 cut(s) 57, 92, 117, 613, 616, 743
MlsI TGGCCA 1 cut(s) 863
MluNI TGGCCA 1 cut(s) 863
MlyI GAGTC 1 cut(s) 743
Mox20I TGGCCA 1 cut(s) 863
MscI TGGCCA 1 cut(s) 863
MseI TTAA 2 cut(s) 288, 822
Msp20I TGGCCA 1 cut(s) 863
MspI CCGG 1 cut(s) 839
MspR9I CCNGG 1 cut(s) 840
Mva1269I GAATGC 1 cut(s) 223
MvnI CGCG 2 cut(s) 54, 165
MwoI GCNNNNNNNGC 2 cut(s) 156, 896
NciI CCSGG 1 cut(s) 840
NcoI CCATGG 1 cut(s) 543
NdeII GATC 2 cut(s) 253, 700
NlaIII CATG 2 cut(s) 547, 716
NlaIV GGNNCC 1 cut(s) 281
NmuCI GTSAC 1 cut(s) 882
PaeR7I CTCGAG 1 cut(s) 195
PalAI GGCGCGCC 1 cut(s) 163
PaqCI CACCTGC 1 cut(s) 895
PauI GCGCGC 1 cut(s) 163
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 239, 772
PkrI GCNGC 3 cut(s) 149, 152, 898
PleI GAGTC 1 cut(s) 742
PpsI GAGTC 1 cut(s) 742
PpuMI RGGWCCY 1 cut(s) 279
Psp5II RGGWCCY 1 cut(s) 279
PspEI GGTNACC 1 cut(s) 882
PspN4I GGNNCC 1 cut(s) 281
PspPI GGNCC 2 cut(s) 279, 836
PspPPI RGGWCCY 1 cut(s) 279
PspXI VCTCGAGB 1 cut(s) 195
PstI CTGCAG 1 cut(s) 412
PteI GCGCGC 1 cut(s) 163
SaqAI TTAA 2 cut(s) 288, 822
SatI GCNGC 3 cut(s) 148, 151, 897
Sau3AI GATC 2 cut(s) 253, 700
Sau96I GGNCC 2 cut(s) 279, 836
SchI GAGTC 1 cut(s) 743
ScrFI CCNGG 1 cut(s) 840
SfaNI GCATC 2 cut(s) 292, 499
SfcI CTRYAG 2 cut(s) 408, 831
Sfr274I CTCGAG 1 cut(s) 195
SgsI GGCGCGCC 1 cut(s) 163
SinI GGWCC 1 cut(s) 279
SlaI CTCGAG 1 cut(s) 195
SmlI CTYRAG 3 cut(s) 195, 513, 738
SmoI CTYRAG 3 cut(s) 195, 513, 738
SsiI CCGC 3 cut(s) 148, 442, 897
SspMI CTAG 3 cut(s) 104, 243, 270
StyD4I CCNGG 1 cut(s) 838
StyI CCWWGG 2 cut(s) 543, 622
TaaI ACNGT 2 cut(s) 331, 499
TaqI TCGA 1 cut(s) 196
TauI GCSGC 2 cut(s) 150, 899
TfiI GAWTC 2 cut(s) 239, 772
Tru1I TTAA 2 cut(s) 288, 822
Tru9I TTAA 2 cut(s) 288, 822
TscAI CASTG 2 cut(s) 219, 871
TseFI GTSAC 1 cut(s) 882
TseI GCWGC 1 cut(s) 150
Tsp45I GTSAC 1 cut(s) 882
TspDTI ATGAA 3 cut(s) 336, 393, 729
TspRI CASTG 2 cut(s) 219, 871
VpaK11BI GGWCC 1 cut(s) 279
XagI CCTNNNNNAGG 1 cut(s) 102
XapI RAATTY 1 cut(s) 743
XhoI CTCGAG 1 cut(s) 195
XmiI GTMKAC 1 cut(s) 799
XspI CTAG 3 cut(s) 104, 243, 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.