Rw7G041290

Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001161
Physical Location & Seq
Reverse (-)
64313384 .. 64314820
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G041290.1

Sequence Viewer

Length: 342 bp
ATGGTTGACAATTTTGAGAGAGCAGAAGTACAAATCAGACCTGAAACTGAAAATGAGAAGAAAATTGATACAAGTTACCAGGGTATATACCAGCAATTTGTTGAGATTATGAAGAGTTTGCGTGTGACATCTGTATCAACTATGGGAAAACCCTTTCATCCTTCGGTGCATGAAGCGATTGCACTAGAAGAGTCTCAAGAATTCCCAGTGGGGATTGTCATTCAAGAAATTCGCCATGGCTTTTTACTTGGTGGTCGACTTCTAAGACCAGCAATGAACACTCCTGTGGCCACTGAAAAATCATCAGGGTCACCTGCAACAGCTGCTTCGGTAGAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GrpE

Protein Analysis

113

Amino Acids

12.53

Weight (kDa)

5.34

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GrpE PF01025 2 - 92 3.7e-20 GrpE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 322
Acc36I ACCTGC 1 cut(s) 322
AccI GTMKAC 1 cut(s) 256
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 2 cut(s) 200, 228
AfaI GTAC 1 cut(s) 30
AgsI TTSAA 1 cut(s) 224
AjnI CCWGG 1 cut(s) 78
AleI CACNNNNGTG 1 cut(s) 284
AluBI AGCT 1 cut(s) 323
AluI AGCT 1 cut(s) 323
Alw26I GTCTC 1 cut(s) 198
AoxI GGCC 1 cut(s) 288
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 2 cut(s) 200, 228
AsuHPI GGTGA 1 cut(s) 303
BaeI ACNNNNGTAYC 2 cut(s) 117, 150
BalI TGGCCA 1 cut(s) 290
BbvI GCAGC 1 cut(s) 310
BciT130I CCWGG 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 1 cut(s) 185
BfuAI ACCTGC 1 cut(s) 322
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
Bme1390I CCNGG 1 cut(s) 80
BmrFI CCNGG 1 cut(s) 80
BmrI ACTGGG 1 cut(s) 200
BmuI ACTGGG 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 180
BsaJI CCNNGG 2 cut(s) 79, 235
Bse1I ACTGG 1 cut(s) 206
Bse3DI GCAATG 1 cut(s) 279
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 2 cut(s) 79, 235
BseGI GGATG 1 cut(s) 157
BseMI GCAATG 1 cut(s) 279
BseNI ACTGG 1 cut(s) 206
BseXI GCAGC 1 cut(s) 310
BshFI GGCC 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 198
BsnI GGCC 1 cut(s) 290
Bsp19I CCATGG 1 cut(s) 235
BspANI GGCC 1 cut(s) 290
BspMI ACCTGC 1 cut(s) 322
BsrDI GCAATG 1 cut(s) 279
BsrI ACTGG 1 cut(s) 206
BssECI CCNNGG 2 cut(s) 79, 235
BssT1I CCWWGG 1 cut(s) 235
Bst2UI CCWGG 1 cut(s) 80
Bst6I CTCTTC 2 cut(s) 107, 183
BstAPI GCANNNNNTGC 1 cut(s) 323
BstDEI CTNAG 1 cut(s) 263
BstDSI CCRYGG 1 cut(s) 235
BstEII GGTNACC 1 cut(s) 309
BstF5I GGATG 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 198
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNI CCWGG 1 cut(s) 80
BstPI GGTNACC 1 cut(s) 309
BstSCI CCNGG 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 310
BsuRI GGCC 1 cut(s) 290
BtgI CCRYGG 1 cut(s) 235
BtsCI GGATG 1 cut(s) 157
BtsIMutI CAGTG 2 cut(s) 213, 291
BveI ACCTGC 1 cut(s) 322
Csp6I GTAC 1 cut(s) 29
CviAII CATG 2 cut(s) 170, 236
CviJI RGCY 3 cut(s) 240, 290, 323
CviKI_1 RGCY 3 cut(s) 240, 290, 323
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 1 cut(s) 263
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 2 cut(s) 107, 183
EarI CTCTTC 2 cut(s) 107, 183
Eco130I CCWWGG 1 cut(s) 235
Eco91I GGTNACC 1 cut(s) 309
EcoO65I GGTNACC 1 cut(s) 309
EcoRI GAATTC 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 2 cut(s) 173, 239
FaiI YATR 6 cut(s) 86, 88, 110, 143, 171, 237
FatI CATG 2 cut(s) 169, 235
FblI GTMKAC 1 cut(s) 256
Fnu4HI GCNGC 1 cut(s) 324
FokI GGATG 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 1 cut(s) 185
GluI GCNGC 1 cut(s) 324
HaeIII GGCC 1 cut(s) 290
Hin1II CATG 2 cut(s) 173, 239
HincII GTYRAC 2 cut(s) 7, 257
HindII GTYRAC 2 cut(s) 7, 257
HinfI GANTC 1 cut(s) 191
HphI GGTGA 1 cut(s) 303
Hpy166II GTNNAC 2 cut(s) 7, 257
Hpy188I TCNGA 1 cut(s) 38
Hpy188III TCNNGA 2 cut(s) 197, 224
Hpy8I GTNNAC 2 cut(s) 7, 257
HpyAV CCTTC 1 cut(s) 171
HpyCH4V TGCA 3 cut(s) 169, 182, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 1 cut(s) 263
Hsp92II CATG 2 cut(s) 173, 239
LpnPI CCDG 9 cut(s) 54, 65, 92, 104, 219, 282, 291, 297, 327
Lsp1109I GCAGC 1 cut(s) 310
MaeI CTAG 1 cut(s) 185
MaeIII GTNAC 3 cut(s) 74, 124, 309
MboII GAAGA 3 cut(s) 70, 124, 200
MlsI TGGCCA 1 cut(s) 290
MluCI AATT 6 cut(s) 10, 63, 95, 200, 228, 337
MluNI TGGCCA 1 cut(s) 290
MlyI GAGTC 1 cut(s) 200
Mox20I TGGCCA 1 cut(s) 290
MscI TGGCCA 1 cut(s) 290
MslI CAYNNNNRTG 1 cut(s) 284
Msp20I TGGCCA 1 cut(s) 290
MspA1I CMGCKG 1 cut(s) 323
MspR9I CCNGG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 323
NcoI CCATGG 1 cut(s) 235
NlaIII CATG 2 cut(s) 173, 239
NmuCI GTSAC 2 cut(s) 124, 309
OliI CACNNNNGTG 1 cut(s) 284
PaqCI CACCTGC 1 cut(s) 322
PkrI GCNGC 1 cut(s) 325
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 78
PspEI GGTNACC 1 cut(s) 309
PspGI CCWGG 1 cut(s) 78
PvuII CAGCTG 1 cut(s) 323
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
RseI CAYNNNNRTG 1 cut(s) 284
SalI GTCGAC 1 cut(s) 255
SatI GCNGC 1 cut(s) 324
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 80
SetI ASST 3 cut(s) 43, 316, 325
SmiMI CAYNNNNRTG 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 195
SmoI CTYRAG 1 cut(s) 195
Sse9I AATT 6 cut(s) 10, 63, 95, 200, 228, 337
SspMI CTAG 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 235
TaqI TCGA 1 cut(s) 256
TasI AATT 6 cut(s) 10, 63, 95, 200, 228, 337
TatI WGTACW 1 cut(s) 28
TscAI CASTG 2 cut(s) 213, 298
TseFI GTSAC 2 cut(s) 124, 309
TseI GCWGC 1 cut(s) 323
Tsp45I GTSAC 2 cut(s) 124, 309
TspDTI ATGAA 4 cut(s) 125, 146, 186, 290
TspRI CASTG 2 cut(s) 213, 298
XapI RAATTY 2 cut(s) 200, 228
XmiI GTMKAC 1 cut(s) 256
XspI CTAG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.