RLG00000007790

Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001161
Physical Location & Seq
Forward (+)
21090599 .. 21092443
1845 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007790

Sequence Viewer

Length: 540 bp
ATGGTGGACAATTTTGAAAGAGGAAAACAACAAATTAGACCTGAAACTGAAAAGGAGAAGAAGATTGATACAAGTTACCGAGGTATATACAAGCAATTTGTTGAGATTATGAGGAGCTTGGGAGCGACCTCTGTGCCAACTAAGGGAAAACCCTTTGATGCTTCGATCAAGGCGGAAAGGGGTCGCAAGATCCAATCTGTTAGGAAGGAGGCAAATAGTTTTGGGCGCCGAGTTGTTGGCAAGGTGGTGATGGGGGCTTCACGCTGCGTGAAGGGTGTGGTTATGCCAGAGCATGGTGGTAACGAGAGGACAGGACTGCCCTCCTCAAGCCGAGGCCATTTGTTATTTGCTGATTGGTGGCGATCAGGGCAGGATCGTCTCTGCACCGACCAGACCCGAGTAGCGGCGGTTTATGGGAGTAGGCGACGACCGGAGCTACTGGTAGGCATGGTGGCGCCGCTCAAAGCTGCTGCTAGAAGTGAGTGGGTGCCCCAAGTAATTTGGGTCCCCATTGAGAAAGAGCGAGCTACGTGGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GrpE

Protein Analysis

180

Amino Acids

20.16

Weight (kDa)

10.34

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 225, 454, 487
AccB7I CCANNNNNTGG 1 cut(s) 293
AccBSI CCGCTC 1 cut(s) 460
AciI CCGC 4 cut(s) 173, 404, 407, 458
AclWI GGATC 2 cut(s) 184, 381
AcyI GRCGYC 2 cut(s) 226, 455
AfiI CCNNNNNNNGG 3 cut(s) 143, 293, 403
AgsI TTSAA 1 cut(s) 17
AluBI AGCT 4 cut(s) 117, 436, 467, 527
AluI AGCT 4 cut(s) 117, 436, 467, 527
Alw26I GTCTC 1 cut(s) 383
AlwI GGATC 2 cut(s) 184, 381
Ama87I CYCGRG 1 cut(s) 396
AoxI GGCC 1 cut(s) 334
ApeKI GCWGC 3 cut(s) 264, 467, 470
AspLEI GCGC 2 cut(s) 228, 457
AspS9I GGNCC 1 cut(s) 505
AsuHPI GGTGA 1 cut(s) 259
AvaI CYCGRG 1 cut(s) 396
AvaII GGWCC 1 cut(s) 505
BaeGI GKGCMC 1 cut(s) 492
BanI GGYRCC 3 cut(s) 225, 454, 487
BbvI GCAGC 3 cut(s) 251, 454, 457
BccI CCATC 1 cut(s) 244
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 1 cut(s) 474
BfoI RGCGCY 2 cut(s) 229, 458
BisI GCNGC 5 cut(s) 265, 405, 458, 468, 471
BlsI GCNGC 5 cut(s) 266, 406, 459, 469, 472
Bme18I GGWCC 1 cut(s) 505
BmeT110I CYCGRG 1 cut(s) 396
BmgT120I GGNCC 1 cut(s) 505
BmiI GGNNCC 5 cut(s) 227, 456, 489, 506, 507
BmsI GCATC 1 cut(s) 148
BpuEI CTTGAG 1 cut(s) 310
BsaAI YACGTR 1 cut(s) 531
BsaHI GRCGYC 2 cut(s) 226, 455
BsaJI CCNNGG 2 cut(s) 79, 331
BsaWI WCCGGW 1 cut(s) 430
Bsc4I CCNNNNNNNGG 3 cut(s) 143, 293, 403
Bse1I ACTGG 1 cut(s) 444
BseDI CCNNGG 2 cut(s) 79, 331
BseLI CCNNNNNNNGG 3 cut(s) 143, 293, 403
BseNI ACTGG 1 cut(s) 444
BseRI GAGGAG 2 cut(s) 127, 313
BseSI GKGCMC 1 cut(s) 492
BseXI GCAGC 3 cut(s) 251, 454, 457
BsgI GTGCAG 1 cut(s) 367
Bsh1285I CGRYCG 1 cut(s) 431
BshFI GGCC 1 cut(s) 336
BshNI GGYRCC 3 cut(s) 225, 454, 487
BsiEI CGRYCG 1 cut(s) 431
BsiHKCI CYCGRG 1 cut(s) 396
BsiSI CCGG 1 cut(s) 431
BslFI GGGAC 1 cut(s) 491
BslI CCNNNNNNNGG 3 cut(s) 143, 293, 403
BsmAI GTCTC 1 cut(s) 383
BsmBI CGTCTC 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 491
BsnI GGCC 1 cut(s) 336
BsoBI CYCGRG 1 cut(s) 396
Bsp1286I GDGCHC 1 cut(s) 492
Bsp143I GATC 4 cut(s) 165, 189, 362, 373
BspACI CCGC 4 cut(s) 173, 404, 407, 458
BspANI GGCC 1 cut(s) 336
BspLI GGNNCC 5 cut(s) 227, 456, 489, 506, 507
BspPI GGATC 2 cut(s) 184, 381
BspT107I GGYRCC 3 cut(s) 225, 454, 487
BsrBI CCGCTC 1 cut(s) 460
BsrI ACTGG 1 cut(s) 444
BssECI CCNNGG 2 cut(s) 79, 331
BssMI GATC 4 cut(s) 165, 189, 362, 373
BssNI GRCGYC 2 cut(s) 226, 455
BstACI GRCGYC 2 cut(s) 226, 455
BstBAI YACGTR 1 cut(s) 531
BstC8I GCNNGC 1 cut(s) 525
BstDEI CTNAG 2 cut(s) 141, 537
BstH2I RGCGCY 2 cut(s) 229, 458
BstHHI GCGC 2 cut(s) 228, 457
BstKTI GATC 4 cut(s) 168, 192, 365, 376
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 4 cut(s) 165, 189, 362, 373
BstMCI CGRYCG 1 cut(s) 431
BstMWI GCNNNNNNNGC 2 cut(s) 367, 533
BstSLI GKGCMC 1 cut(s) 492
BstV1I GCAGC 3 cut(s) 251, 454, 457
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
BsuRI GGCC 1 cut(s) 336
Cac8I GCNNGC 1 cut(s) 525
CfoI GCGC 2 cut(s) 228, 457
Cfr13I GGNCC 1 cut(s) 505
CviAII CATG 2 cut(s) 293, 448
CviJI RGCY 8 cut(s) 117, 257, 330, 336, 436, 467, 527, 536
CviKI_1 RGCY 8 cut(s) 117, 257, 330, 336, 436, 467, 527, 536
DdeI CTNAG 2 cut(s) 141, 537
DinI GGCGCC 2 cut(s) 227, 456
DpnI GATC 4 cut(s) 167, 191, 364, 375
DpnII GATC 4 cut(s) 165, 189, 362, 373
EciI GGCGGA 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 505
Eco88I CYCGRG 1 cut(s) 396
EcoO109I RGGNCCY 1 cut(s) 505
EgeI GGCGCC 2 cut(s) 227, 456
EheI GGCGCC 2 cut(s) 227, 456
Esp3I CGTCTC 1 cut(s) 383
FaeI CATG 2 cut(s) 296, 451
FaiI YATR 7 cut(s) 86, 88, 110, 284, 294, 414, 449
FaqI GGGAC 1 cut(s) 491
FatI CATG 2 cut(s) 292, 447
Fnu4HI GCNGC 5 cut(s) 265, 405, 458, 468, 471
Fsp4HI GCNGC 5 cut(s) 265, 405, 458, 468, 471
FspBI CTAG 1 cut(s) 474
GlaI GCGC 2 cut(s) 227, 456
GluI GCNGC 5 cut(s) 265, 405, 458, 468, 471
HaeII RGCGCY 2 cut(s) 229, 458
HaeIII GGCC 1 cut(s) 336
HapII CCGG 1 cut(s) 431
HhaI GCGC 2 cut(s) 228, 457
Hin1I GRCGYC 2 cut(s) 226, 455
Hin1II CATG 2 cut(s) 296, 451
Hin6I GCGC 2 cut(s) 226, 455
HinP1I GCGC 2 cut(s) 226, 455
HpaII CCGG 1 cut(s) 431
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 1 cut(s) 7
Hpy8I GTNNAC 1 cut(s) 7
Hpy99I CGWCG 1 cut(s) 429
HpyAV CCTTC 2 cut(s) 199, 265
HpyCH4IV ACGT 1 cut(s) 530
HpyCH4V TGCA 1 cut(s) 384
HpyF10VI GCNNNNNNNGC 2 cut(s) 367, 533
HpyF3I CTNAG 2 cut(s) 141, 537
HpySE526I ACGT 1 cut(s) 530
Hsp92I GRCGYC 2 cut(s) 226, 455
Hsp92II CATG 2 cut(s) 296, 451
HspAI GCGC 2 cut(s) 226, 455
KasI GGCGCC 2 cut(s) 225, 454
KflI GGGWCCC 1 cut(s) 505
Kzo9I GATC 4 cut(s) 165, 189, 362, 373
LmnI GCTCC 3 cut(s) 114, 122, 433
LpnPI CCDG 8 cut(s) 54, 297, 300, 351, 356, 404, 425, 444
Lsp1109I GCAGC 3 cut(s) 251, 454, 457
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 474
MaeII ACGT 1 cut(s) 530
MaeIII GTNAC 2 cut(s) 74, 299
MalI GATC 4 cut(s) 167, 191, 364, 375
MbiI CCGCTC 1 cut(s) 460
MboI GATC 4 cut(s) 165, 189, 362, 373
MboII GAAGA 2 cut(s) 70, 73
MflI RGATCY 1 cut(s) 189
MhlI GDGCHC 1 cut(s) 492
MluCI AATT 4 cut(s) 10, 33, 95, 498
Mly113I GGCGCC 2 cut(s) 226, 455
MnlI CCTC 9 cut(s) 14, 74, 105, 139, 202, 300, 326, 331, 334
MspI CCGG 1 cut(s) 431
MwoI GCNNNNNNNGC 2 cut(s) 367, 533
NarI GGCGCC 2 cut(s) 226, 455
NdeII GATC 4 cut(s) 165, 189, 362, 373
NlaIII CATG 2 cut(s) 296, 451
NlaIV GGNNCC 5 cut(s) 227, 456, 489, 506, 507
NmeAIII GCCGAG 2 cut(s) 254, 356
PflMI CCANNNNNTGG 1 cut(s) 293
PkrI GCNGC 5 cut(s) 266, 406, 459, 469, 472
PluTI GGCGCC 2 cut(s) 229, 458
Ppu21I YACGTR 1 cut(s) 531
PpuMI RGGWCCY 1 cut(s) 505
Psp5II RGGWCCY 1 cut(s) 505
PspN4I GGNNCC 5 cut(s) 227, 456, 489, 506, 507
PspPI GGNCC 1 cut(s) 505
PspPPI RGGWCCY 1 cut(s) 505
PsuI RGATCY 1 cut(s) 189
SatI GCNGC 5 cut(s) 265, 405, 458, 468, 471
Sau3AI GATC 4 cut(s) 165, 189, 362, 373
Sau96I GGNCC 1 cut(s) 505
SduI GDGCHC 1 cut(s) 492
SetI ASST 9 cut(s) 43, 85, 119, 131, 246, 438, 469, 529, 533
SfaNI GCATC 1 cut(s) 148
SfoI GGCGCC 2 cut(s) 227, 456
SinI GGWCC 1 cut(s) 505
SmlI CTYRAG 1 cut(s) 325
SmoI CTYRAG 1 cut(s) 325
Sse9I AATT 4 cut(s) 10, 33, 95, 498
SsiI CCGC 4 cut(s) 173, 404, 407, 458
SspDI GGCGCC 2 cut(s) 225, 454
SspMI CTAG 1 cut(s) 474
TaiI ACGT 1 cut(s) 533
TaqI TCGA 1 cut(s) 164
TasI AATT 4 cut(s) 10, 33, 95, 498
TauI GCSGC 2 cut(s) 407, 460
TseI GCWGC 3 cut(s) 264, 467, 470
Van91I CCANNNNNTGG 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 505
XspI CTAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.