Rorug07G0337300

Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
37056125 .. 37057448
1324 bp
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UTR
Exon/CDS
Intron
Rorug07G0337300.1

Sequence Viewer

Length: 630 bp
ATGCCAATAGCTATCAAGACTGATGACGCTAAAGCTCAACACTATGAAGTACCCACTTCTTTCTTCAAGATGGTGCTTGGAAACAATCTCAAATATAGTTGCTGTTACTTCACTGATAAGTCAAGCAGCTTGGAGGATGCGGAGAAAGCCATGTTGGAGATGGTTACTGGGATCTACAATTCAGCAACACAGAAGGCTTTTATAGAAGAGCAGTGTAGGAATCGTCAGCTGGAGAATGTGGAGATCATCGTTGCAGATATCAGCACATTTGAGATAGAGGCATCATATGACGGAATACTTTCCATCGAAATGTTTGAGCAGCACATGAATAACTACAAGGATATTCTGAAGAAGATATCCGAGTGGATGAAACAGGACGACCTTCTGTTTGTACATCATTTCTGTCACAAAGCATTTGCTTACCACTTTGAGGACAAAAGTGATGATGACTGGATTCATTGGAGGTACAATGGCTTAAGCAAATCTACTACTGATGATGTTTCTGTTGTCGATCATTGGCTTGTCAATGGGAAGCATTATGCAAAAACAAGTGAAGAATGGCTGAAAAGAATGGACCAGAATTTGGCTTCCATATGCATTGCTTGTTCGGTAACAAAAGCTACTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

209

Amino Acids

24.34

Weight (kDa)

5.34

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CMAS PF02353 9 - 55 1.7e-07 Mycolic acid cyclopropane synthetase
CMAS PF02353 55 - 198 4.5e-06 Mycolic acid cyclopropane synthetase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 583
AciI CCGC 1 cut(s) 140
AclWI GGATC 1 cut(s) 179
AcsI RAATTY 1 cut(s) 580
AcuI CTGAAG 1 cut(s) 368
AfaI GTAC 3 cut(s) 51, 393, 467
AfiI CCNNNNNNNGG 2 cut(s) 430, 583
AflII CTTAAG 1 cut(s) 475
AgsI TTSAA 1 cut(s) 67
AjuI GAANNNNNNNTTGG 2 cut(s) 137, 169
AluBI AGCT 5 cut(s) 11, 35, 129, 229, 620
AluI AGCT 5 cut(s) 11, 35, 129, 229, 620
AlwI GGATC 1 cut(s) 179
ApeKI GCWGC 2 cut(s) 126, 319
ApoI RAATTY 1 cut(s) 580
ArsI GACNNNNNNTTYG 2 cut(s) 371, 403
Asp700I GAANNNNTTC 1 cut(s) 298
AspS9I GGNCC 1 cut(s) 574
AvaII GGWCC 1 cut(s) 574
BbvI GCAGC 2 cut(s) 138, 331
BccI CCATC 3 cut(s) 64, 154, 311
BfrI CTTAAG 1 cut(s) 475
BisI GCNGC 2 cut(s) 127, 320
BlsI GCNGC 2 cut(s) 128, 321
Bme18I GGWCC 1 cut(s) 574
BmgT120I GGNCC 1 cut(s) 574
BmrI ACTGGG 1 cut(s) 177
BmsI GCATC 2 cut(s) 127, 290
BmuI ACTGGG 1 cut(s) 177
BpmI CTGGAG 1 cut(s) 251
Bsc4I CCNNNNNNNGG 2 cut(s) 430, 583
Bse1I ACTGG 2 cut(s) 172, 455
Bse3DI GCAATG 1 cut(s) 597
BseGI GGATG 2 cut(s) 142, 372
BseLI CCNNNNNNNGG 2 cut(s) 430, 583
BseMI GCAATG 1 cut(s) 597
BseNI ACTGG 2 cut(s) 172, 455
BseXI GCAGC 2 cut(s) 138, 331
BslI CCNNNNNNNGG 2 cut(s) 430, 583
Bsp1407I TGTACA 1 cut(s) 391
Bsp143I GATC 3 cut(s) 171, 243, 511
BspACI CCGC 1 cut(s) 140
BspPI GGATC 1 cut(s) 179
BspQI GCTCTTC 1 cut(s) 201
BspTI CTTAAG 1 cut(s) 475
BsrDI GCAATG 1 cut(s) 597
BsrGI TGTACA 1 cut(s) 391
BsrI ACTGG 2 cut(s) 172, 455
BssMI GATC 3 cut(s) 171, 243, 511
Bst6I CTCTTC 1 cut(s) 201
BstAFI CTTAAG 1 cut(s) 475
BstAUI TGTACA 1 cut(s) 391
BstF5I GGATG 2 cut(s) 142, 372
BstKTI GATC 3 cut(s) 174, 246, 514
BstMBI GATC 3 cut(s) 171, 243, 511
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstV1I GCAGC 2 cut(s) 138, 331
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
BtsCI GGATG 2 cut(s) 142, 372
BtsI GCAGTG 1 cut(s) 218
BtsIMutI CAGTG 2 cut(s) 111, 218
Cfr13I GGNCC 1 cut(s) 574
CseI GACGC 1 cut(s) 35
Csp6I GTAC 3 cut(s) 50, 392, 466
CviAII CATG 2 cut(s) 151, 325
CviQI GTAC 3 cut(s) 50, 392, 466
DpnI GATC 3 cut(s) 173, 245, 513
DpnII GATC 3 cut(s) 171, 243, 511
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco32I GATATC 2 cut(s) 259, 357
Eco47I GGWCC 1 cut(s) 574
Eco57I CTGAAG 1 cut(s) 368
EcoRV GATATC 2 cut(s) 259, 357
EcoT22I ATGCAT 1 cut(s) 599
FaeI CATG 2 cut(s) 154, 328
FatI CATG 2 cut(s) 150, 324
FauNDI CATATG 2 cut(s) 286, 593
Fnu4HI GCNGC 2 cut(s) 127, 320
FokI GGATG 2 cut(s) 149, 379
Fsp4HI GCNGC 2 cut(s) 127, 320
GluI GCNGC 2 cut(s) 127, 320
GsuI CTGGAG 1 cut(s) 251
HgaI GACGC 1 cut(s) 35
Hin1II CATG 2 cut(s) 154, 328
HinfI GANTC 2 cut(s) 220, 454
Hpy188I TCNGA 2 cut(s) 348, 361
Hpy188III TCNNGA 2 cut(s) 16, 67
HpyAV CCTTC 2 cut(s) 187, 392
HpyCH4V TGCA 3 cut(s) 254, 542, 597
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
Hsp92II CATG 2 cut(s) 154, 328
Kzo9I GATC 3 cut(s) 171, 243, 511
LguI GCTCTTC 1 cut(s) 201
LpnPI CCDG 5 cut(s) 153, 215, 359, 436, 590
Lsp1109I GCAGC 2 cut(s) 138, 331
LweI GCATC 2 cut(s) 127, 290
MaeIII GTNAC 4 cut(s) 104, 163, 404, 610
MalI GATC 3 cut(s) 173, 245, 513
MboI GATC 3 cut(s) 171, 243, 511
MboII GAAGA 5 cut(s) 55, 218, 361, 364, 566
MflI RGATCY 1 cut(s) 171
MluCI AATT 2 cut(s) 178, 580
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 4 cut(s) 127, 271, 424, 456
Mph1103I ATGCAT 1 cut(s) 599
MroXI GAANNNNTTC 1 cut(s) 298
MseI TTAA 1 cut(s) 476
MslI CAYNNNNRTG 1 cut(s) 308
MspA1I CMGCKG 1 cut(s) 229
MspCI CTTAAG 1 cut(s) 475
MwoI GCNNNNNNNGC 1 cut(s) 146
NdeI CATATG 2 cut(s) 286, 593
NdeII GATC 3 cut(s) 171, 243, 511
NlaIII CATG 2 cut(s) 154, 328
NmuCI GTSAC 1 cut(s) 404
NsiI ATGCAT 1 cut(s) 599
PciSI GCTCTTC 1 cut(s) 201
PdmI GAANNNNTTC 1 cut(s) 298
PfeI GAWTC 2 cut(s) 220, 454
PflMI CCANNNNNTGG 1 cut(s) 583
PkrI GCNGC 2 cut(s) 128, 321
PspPI GGNCC 1 cut(s) 574
PsuI RGATCY 1 cut(s) 171
PvuII CAGCTG 1 cut(s) 229
RsaI GTAC 3 cut(s) 51, 393, 467
RsaNI GTAC 3 cut(s) 50, 392, 466
RseI CAYNNNNRTG 1 cut(s) 308
SapI GCTCTTC 1 cut(s) 201
SaqAI TTAA 1 cut(s) 476
SatI GCNGC 2 cut(s) 127, 320
Sau3AI GATC 3 cut(s) 171, 243, 511
Sau96I GGNCC 1 cut(s) 574
SetI ASST 7 cut(s) 13, 37, 131, 231, 384, 467, 622
SfaNI GCATC 2 cut(s) 127, 290
SinI GGWCC 1 cut(s) 574
SmiMI CAYNNNNRTG 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 475
SmoI CTYRAG 1 cut(s) 475
Sse9I AATT 2 cut(s) 178, 580
SsiI CCGC 1 cut(s) 140
TaqI TCGA 2 cut(s) 306, 510
TasI AATT 2 cut(s) 178, 580
TatI WGTACW 1 cut(s) 391
TfiI GAWTC 2 cut(s) 220, 454
Tru1I TTAA 1 cut(s) 476
Tru9I TTAA 1 cut(s) 476
TscAI CASTG 2 cut(s) 118, 218
TseFI GTSAC 1 cut(s) 404
TseI GCWGC 2 cut(s) 126, 319
Tsp45I GTSAC 1 cut(s) 404
TspDTI ATGAA 4 cut(s) 60, 341, 383, 446
TspGWI ACGGA 1 cut(s) 306
TspRI CASTG 2 cut(s) 118, 218
Van91I CCANNNNNTGG 1 cut(s) 583
Vha464I CTTAAG 1 cut(s) 475
VpaK11BI GGWCC 1 cut(s) 574
XapI RAATTY 1 cut(s) 580
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XmnI GAANNNNTTC 1 cut(s) 298
Zsp2I ATGCAT 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.