Rh7AG491400

Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001161
Physical Location & Seq
Reverse (-)
69147462 .. 69150388
2927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG491400.1

Sequence Viewer

Length: 912 bp
ATGGCGAATTCGTTGTTTATCCCAAACAACTACTTGGTCATACCTCCTCCTCGAGTTTCTGCTTCCTTCTCCTCAAAACCCATCGCTCCTCAACCTCTTCTAGGCTTTTCAGTCACCAATTCTTCCCCCATAGTTTTACATAGCCGCAGCAGCAGCAAGCGTGCCTCGTCTTTCAAATCTCATCTTTCTGCTCGAGGTTCTGTTCCCCCAGTGAATGCAAAAGAGGATAATGTAGATTCTAGTGGAGCAGATCAACAACATTTGCCCAGTTTGAGGACCCTCCTTAAAGTTTACAAGGATGCTATTTTCAATGAAGATGAAAAGACTGTATCCGAAATTGAGGCAAGGATAGAAGTAATAGAAAATAAGCAGAATGAATTAGTCCAGAAAGTATCATCTATATCTGCAGAGGCAACATCAGGAAAGGAAAAGCTTATCCGCTTGCAAGCAGATTTTGATAATTGTAGAAAAAGATTTGAGAAAGAGAGACTAACTGTGAGGACTGATGCTCAAGGAGAAGTAATTGAGAGCCTTTTGCCCATGGTTGACAATTTTGAGAGAGCAAAACAACAGATTAGACCTGAAACTGAAAAGGAGAAGAAGATTGATACAAGTTACCAAGGTATATACAAGCAATTTGTTGAGATTATGAGGAACTTGTGTGTGGCCTCTGTGCCAACTAAGGGAAAGCCCTTTGATCCTTCGGTGCATGAAGCTATTGCAAGAGAAGAGTCTCAAGAATTTCCTGAGGGGATTGTCATTCAAGAGATTCGCCGTGGCTTTTTACTTGGAGGTAGACTTCTAAGACCAGCAATGGTTAAAGTCTCTATAGGGCCTGGCAGAAAGAAATCCCCTGTGGCCACTGAGAAATCATCAGGGTCACCTGCAACAGCCGCTTCGGTAGAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GrpE

Protein Analysis

303

Amino Acids

33.48

Weight (kDa)

9.19

Isoelectric Point (pI)

52.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GrpE PF01025 120 - 276 2.3e-39 GrpE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 892
Acc36I ACCTGC 1 cut(s) 892
AccI GTMKAC 1 cut(s) 796
AciI CCGC 3 cut(s) 145, 439, 894
AclWI GGATC 1 cut(s) 692
AcoI YGGCCR 1 cut(s) 858
AcsI RAATTY 2 cut(s) 7, 740
AfiI CCNNNNNNNGG 3 cut(s) 101, 273, 683
AgsI TTSAA 3 cut(s) 175, 310, 764
AjnI CCWGG 1 cut(s) 835
AluBI AGCT 2 cut(s) 433, 716
AluI AGCT 2 cut(s) 433, 716
Alw26I GTCTC 3 cut(s) 481, 738, 829
AlwI GGATC 1 cut(s) 692
Ama87I CYCGRG 2 cut(s) 51, 192
AoxI GGCC 3 cut(s) 666, 833, 858
ApeKI GCWGC 3 cut(s) 147, 150, 153
ApoI RAATTY 2 cut(s) 7, 740
AspS9I GGNCC 2 cut(s) 276, 833
AsuHPI GGTGA 2 cut(s) 106, 873
AvaI CYCGRG 2 cut(s) 51, 192
AvaII GGWCC 1 cut(s) 276
AxyI CCTNAGG 1 cut(s) 747
BalI TGGCCA 1 cut(s) 860
BbvI GCAGC 3 cut(s) 159, 162, 165
BccI CCATC 1 cut(s) 89
BceAI ACGGC 1 cut(s) 759
BciT130I CCWGG 1 cut(s) 837
BciVI GTATCC 1 cut(s) 340
BcoDI GTCTC 3 cut(s) 481, 738, 829
BfaI CTAG 2 cut(s) 101, 240
BfmI CTRYAG 2 cut(s) 405, 828
BfuAI ACCTGC 1 cut(s) 892
BfuI GTATCC 1 cut(s) 340
BisI GCNGC 5 cut(s) 145, 148, 151, 154, 894
BlsI GCNGC 5 cut(s) 146, 149, 152, 155, 895
Bme1390I CCNGG 1 cut(s) 837
Bme18I GGWCC 1 cut(s) 276
BmeT110I CYCGRG 2 cut(s) 51, 192
BmgT120I GGNCC 2 cut(s) 276, 833
BmiI GGNNCC 1 cut(s) 278
BmrFI CCNGG 1 cut(s) 837
BmrI ACTGGG 2 cut(s) 203, 261
BmsI GCATC 2 cut(s) 289, 496
BmuI ACTGGG 2 cut(s) 203, 261
BpuEI CTTGAG 2 cut(s) 495, 720
BsaJI CCNNGG 3 cut(s) 540, 619, 775
Bsc4I CCNNNNNNNGG 3 cut(s) 101, 273, 683
Bse1I ACTGG 2 cut(s) 209, 267
Bse21I CCTNAGG 1 cut(s) 747
Bse3DI GCAATG 1 cut(s) 819
BseBI CCWGG 1 cut(s) 837
BseDI CCNNGG 3 cut(s) 540, 619, 775
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 3 cut(s) 101, 273, 683
BseMI GCAATG 1 cut(s) 819
BseMII CTCAG 2 cut(s) 738, 855
BseNI ACTGG 2 cut(s) 209, 267
BseRI GAGGAG 4 cut(s) 36, 39, 61, 78
BseXI GCAGC 3 cut(s) 159, 162, 165
BshFI GGCC 3 cut(s) 668, 835, 860
BsiHKCI CYCGRG 2 cut(s) 51, 192
BslI CCNNNNNNNGG 3 cut(s) 101, 273, 683
BsmAI GTCTC 3 cut(s) 481, 738, 829
BsmI GAATGC 1 cut(s) 220
BsnI GGCC 3 cut(s) 668, 835, 860
BsoBI CYCGRG 2 cut(s) 51, 192
Bsp143I GATC 2 cut(s) 250, 697
Bsp19I CCATGG 1 cut(s) 540
BspACI CCGC 3 cut(s) 145, 439, 894
BspANI GGCC 3 cut(s) 668, 835, 860
BspCNI CTCAG 2 cut(s) 739, 856
BspLI GGNNCC 1 cut(s) 278
BspMAI CTGCAG 1 cut(s) 409
BspMI ACCTGC 1 cut(s) 892
BspPI GGATC 1 cut(s) 692
BsrDI GCAATG 1 cut(s) 819
BsrI ACTGG 2 cut(s) 209, 267
BssECI CCNNGG 3 cut(s) 540, 619, 775
BssMI GATC 2 cut(s) 250, 697
BssT1I CCWWGG 2 cut(s) 540, 619
Bst2UI CCWGG 1 cut(s) 837
Bst4CI ACNGT 2 cut(s) 328, 496
Bst6I CTCTTC 2 cut(s) 102, 723
BstC8I GCNNGC 4 cut(s) 158, 162, 443, 447
BstDEI CTNAG 4 cut(s) 681, 747, 803, 864
BstDSI CCRYGG 2 cut(s) 540, 775
BstEII GGTNACC 1 cut(s) 879
BstENI CCTNNNNNAGG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 304
BstKTI GATC 2 cut(s) 253, 700
BstMAI GTCTC 3 cut(s) 481, 738, 829
BstMBI GATC 2 cut(s) 250, 697
BstMWI GCNNNNNNNGC 3 cut(s) 150, 153, 893
BstNI CCWGG 1 cut(s) 837
BstPI GGTNACC 1 cut(s) 879
BstSCI CCNGG 1 cut(s) 835
BstSFI CTRYAG 2 cut(s) 405, 828
BstV1I GCAGC 3 cut(s) 159, 162, 165
Bsu36I CCTNAGG 1 cut(s) 747
BsuI GTATCC 1 cut(s) 340
BsuRI GGCC 3 cut(s) 668, 835, 860
BtgI CCRYGG 2 cut(s) 540, 775
BtgZI GCGATG 1 cut(s) 67
BtsCI GGATG 1 cut(s) 304
BtsIMutI CAGTG 2 cut(s) 216, 861
BveI ACCTGC 1 cut(s) 892
Cac8I GCNNGC 4 cut(s) 158, 162, 443, 447
Cfr13I GGNCC 2 cut(s) 276, 833
CviAII CATG 2 cut(s) 541, 710
DdeI CTNAG 4 cut(s) 681, 747, 803, 864
DpnI GATC 2 cut(s) 252, 699
DpnII GATC 2 cut(s) 250, 697
EaeI YGGCCR 1 cut(s) 858
Eam1104I CTCTTC 2 cut(s) 102, 723
EarI CTCTTC 2 cut(s) 102, 723
Eco130I CCWWGG 2 cut(s) 540, 619
Eco47I GGWCC 1 cut(s) 276
Eco81I CCTNAGG 1 cut(s) 747
Eco88I CYCGRG 2 cut(s) 51, 192
Eco91I GGTNACC 1 cut(s) 879
EcoNI CCTNNNNNAGG 1 cut(s) 99
EcoO109I RGGNCCY 2 cut(s) 276, 833
EcoO65I GGTNACC 1 cut(s) 879
EcoRI GAATTC 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 835
EcoT14I CCWWGG 2 cut(s) 540, 619
ErhI CCWWGG 2 cut(s) 540, 619
FaeI CATG 2 cut(s) 544, 713
FatI CATG 2 cut(s) 540, 709
FblI GTMKAC 1 cut(s) 796
Fnu4HI GCNGC 5 cut(s) 145, 148, 151, 154, 894
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 5 cut(s) 145, 148, 151, 154, 894
FspBI CTAG 2 cut(s) 101, 240
GluI GCNGC 5 cut(s) 145, 148, 151, 154, 894
HaeIII GGCC 3 cut(s) 668, 835, 860
Hin1II CATG 2 cut(s) 544, 713
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 3 cut(s) 236, 731, 769
HphI GGTGA 2 cut(s) 106, 873
Hpy166II GTNNAC 3 cut(s) 292, 547, 797
Hpy188I TCNGA 1 cut(s) 334
Hpy188III TCNNGA 5 cut(s) 385, 420, 737, 746, 764
Hpy8I GTNNAC 3 cut(s) 292, 547, 797
HpyAV CCTTC 2 cut(s) 76, 711
HpyCH4III ACNGT 2 cut(s) 328, 496
HpyCH4V TGCA 6 cut(s) 218, 407, 445, 709, 722, 887
HpyF10VI GCNNNNNNNGC 3 cut(s) 150, 153, 893
HpyF3I CTNAG 4 cut(s) 681, 747, 803, 864
Hsp92II CATG 2 cut(s) 544, 713
Kzo9I GATC 2 cut(s) 250, 697
LmnI GCTCC 2 cut(s) 91, 245
Lsp1109I GCAGC 3 cut(s) 159, 162, 165
LweI GCATC 2 cut(s) 289, 496
MaeI CTAG 2 cut(s) 101, 240
MaeIII GTNAC 3 cut(s) 112, 614, 879
MalI GATC 2 cut(s) 252, 699
MboI GATC 2 cut(s) 250, 697
MboII GAAGA 6 cut(s) 89, 114, 326, 610, 613, 740
MlsI TGGCCA 1 cut(s) 860
MluNI TGGCCA 1 cut(s) 860
MlyI GAGTC 1 cut(s) 740
Mox20I TGGCCA 1 cut(s) 860
MscI TGGCCA 1 cut(s) 860
MseI TTAA 2 cut(s) 285, 819
Msp20I TGGCCA 1 cut(s) 860
MspR9I CCNGG 1 cut(s) 837
Mva1269I GAATGC 1 cut(s) 220
MvaI CCWGG 1 cut(s) 837
MwoI GCNNNNNNNGC 3 cut(s) 150, 153, 893
NcoI CCATGG 1 cut(s) 540
NdeII GATC 2 cut(s) 250, 697
NlaIII CATG 2 cut(s) 544, 713
NlaIV GGNNCC 1 cut(s) 278
NmuCI GTSAC 2 cut(s) 112, 879
PaeR7I CTCGAG 2 cut(s) 51, 192
PaqCI CACCTGC 1 cut(s) 892
PctI GAATGC 1 cut(s) 220
PfeI GAWTC 2 cut(s) 236, 769
PkrI GCNGC 5 cut(s) 146, 149, 152, 155, 895
PleI GAGTC 1 cut(s) 739
PpsI GAGTC 1 cut(s) 739
PpuMI RGGWCCY 1 cut(s) 276
Psp5II RGGWCCY 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 835
PspEI GGTNACC 1 cut(s) 879
PspGI CCWGG 1 cut(s) 835
PspN4I GGNNCC 1 cut(s) 278
PspPI GGNCC 2 cut(s) 276, 833
PspPPI RGGWCCY 1 cut(s) 276
PspXI VCTCGAGB 2 cut(s) 51, 192
PstI CTGCAG 1 cut(s) 409
SaqAI TTAA 2 cut(s) 285, 819
SatI GCNGC 5 cut(s) 145, 148, 151, 154, 894
Sau3AI GATC 2 cut(s) 250, 697
Sau96I GGNCC 2 cut(s) 276, 833
SchI GAGTC 1 cut(s) 740
ScrFI CCNGG 1 cut(s) 837
SetI ASST 9 cut(s) 46, 97, 199, 435, 583, 625, 718, 796, 886
SfaNI GCATC 2 cut(s) 289, 496
SfcI CTRYAG 2 cut(s) 405, 828
Sfr274I CTCGAG 2 cut(s) 51, 192
SinI GGWCC 1 cut(s) 276
SlaI CTCGAG 2 cut(s) 51, 192
SmlI CTYRAG 4 cut(s) 51, 192, 510, 735
SmoI CTYRAG 4 cut(s) 51, 192, 510, 735
SsiI CCGC 3 cut(s) 145, 439, 894
SspMI CTAG 2 cut(s) 101, 240
StyD4I CCNGG 1 cut(s) 835
StyI CCWWGG 2 cut(s) 540, 619
TaaI ACNGT 2 cut(s) 328, 496
TaqI TCGA 2 cut(s) 52, 193
TauI GCSGC 2 cut(s) 147, 896
TfiI GAWTC 2 cut(s) 236, 769
Tru1I TTAA 2 cut(s) 285, 819
Tru9I TTAA 2 cut(s) 285, 819
TscAI CASTG 2 cut(s) 216, 868
TseFI GTSAC 2 cut(s) 112, 879
TseI GCWGC 3 cut(s) 147, 150, 153
Tsp45I GTSAC 2 cut(s) 112, 879
TspDTI ATGAA 4 cut(s) 327, 333, 390, 726
TspRI CASTG 2 cut(s) 216, 868
VpaK11BI GGWCC 1 cut(s) 276
XagI CCTNNNNNAGG 1 cut(s) 99
XapI RAATTY 2 cut(s) 7, 740
XhoI CTCGAG 2 cut(s) 51, 192
XmiI GTMKAC 1 cut(s) 796
XspI CTAG 2 cut(s) 101, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.