RLG00000000665

Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001161
Physical Location & Seq
Forward (+)
3357519 .. 3359134
1616 bp
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UTR
Exon/CDS
Intron
RLM00000000665

Sequence Viewer

Length: 330 bp
ATGCTCAAGGAGAAGTTAATTGAGAGCCTTTTGCCCATGGTTGACAATTTTGAGAGAGCAAAAGTACAAATTAGACCTGAAACTGAAAATGAGAAGAAAATTGATACAAGTTACAGAGGCATATACAAGCAATTTGTTGAGATTATGAGGAGTTTGCGTGTGGCATCTGTATCAACTATGGGAAAACCCTTTGATCCTTCGGATTGGAAGGCTGGGATGAGAATCAAGATGGCCATGGAGACTGATGACTCCTCCAGGATGACTTGGTTTCAGGGCACTCTGTCTTCCGCCTTTGTTCCGGAAAATGGGCCTTGGAAGGGATCTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GrpE

Protein Analysis

110

Amino Acids

12.54

Weight (kDa)

8.96

Isoelectric Point (pI)

35.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GrpE PF01025 4 - 73 2.8e-10 GrpE
ARF_AD PF06507 68 - 109 1.9e-08 Auxin response factor ancillary domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 298
AciI CCGC 1 cut(s) 288
AclWI GGATC 2 cut(s) 188, 328
AcoI YGGCCR 1 cut(s) 231
AfaI GTAC 1 cut(s) 66
AfiI CCNNNNNNNGG 2 cut(s) 305, 317
AjnI CCWGG 1 cut(s) 254
Alw26I GTCTC 1 cut(s) 233
AlwI GGATC 2 cut(s) 188, 328
Aor13HI TCCGGA 1 cut(s) 298
AoxI GGCC 2 cut(s) 231, 308
AspS9I GGNCC 1 cut(s) 308
BaeGI GKGCMC 1 cut(s) 278
BalI TGGCCA 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 276
BccI CCATC 1 cut(s) 223
BciT130I CCWGG 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 233
Bme1390I CCNGG 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 308
BmrFI CCNGG 1 cut(s) 256
BmsI GCATC 1 cut(s) 173
BpiI GAAGAC 1 cut(s) 276
BpmI CTGGAG 1 cut(s) 238
BsaBI GATNNNNATC 1 cut(s) 221
BsaJI CCNNGG 3 cut(s) 36, 234, 311
BsaWI WCCGGW 1 cut(s) 298
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 2 cut(s) 305, 317
Bse8I GATNNNNATC 1 cut(s) 221
BseAI TCCGGA 1 cut(s) 298
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 3 cut(s) 36, 234, 311
BseGI GGATG 2 cut(s) 222, 264
BseJI GATNNNNATC 1 cut(s) 221
BseLI CCNNNNNNNGG 2 cut(s) 305, 317
BseRI GAGGAG 2 cut(s) 163, 241
BseSI GKGCMC 1 cut(s) 278
BseYI CCCAGC 1 cut(s) 212
BshFI GGCC 2 cut(s) 233, 310
BsiSI CCGG 1 cut(s) 299
BslI CCNNNNNNNGG 2 cut(s) 305, 317
BsmAI GTCTC 1 cut(s) 233
BsnI GGCC 2 cut(s) 233, 310
Bsp1286I GDGCHC 1 cut(s) 278
Bsp13I TCCGGA 1 cut(s) 298
Bsp143I GATC 2 cut(s) 193, 320
Bsp19I CCATGG 2 cut(s) 36, 234
BspACI CCGC 1 cut(s) 288
BspANI GGCC 2 cut(s) 233, 310
BspEI TCCGGA 1 cut(s) 298
BspPI GGATC 2 cut(s) 188, 328
BssECI CCNNGG 3 cut(s) 36, 234, 311
BssMI GATC 2 cut(s) 193, 320
BssT1I CCWWGG 3 cut(s) 36, 234, 311
Bst2UI CCWGG 1 cut(s) 256
BstDSI CCRYGG 2 cut(s) 36, 234
BstF5I GGATG 2 cut(s) 222, 264
BstKTI GATC 2 cut(s) 196, 323
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 2 cut(s) 193, 320
BstNI CCWGG 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 254
BstSLI GKGCMC 1 cut(s) 278
BstV2I GAAGAC 1 cut(s) 276
BstX2I RGATCY 1 cut(s) 320
BstYI RGATCY 1 cut(s) 320
BsuRI GGCC 2 cut(s) 233, 310
BtgI CCRYGG 2 cut(s) 36, 234
BtsCI GGATG 2 cut(s) 222, 264
Cfr13I GGNCC 1 cut(s) 308
Csp6I GTAC 1 cut(s) 65
CviAII CATG 3 cut(s) 37, 235, 327
CviJI RGCY 4 cut(s) 27, 212, 233, 310
CviKI_1 RGCY 4 cut(s) 27, 212, 233, 310
CviQI GTAC 1 cut(s) 65
DpnI GATC 2 cut(s) 195, 322
DpnII GATC 2 cut(s) 193, 320
EaeI YGGCCR 1 cut(s) 231
EciI GGCGGA 1 cut(s) 277
Eco130I CCWWGG 3 cut(s) 36, 234, 311
EcoRII CCWGG 1 cut(s) 254
EcoT14I CCWWGG 3 cut(s) 36, 234, 311
ErhI CCWWGG 3 cut(s) 36, 234, 311
FaeI CATG 3 cut(s) 40, 238, 330
FaiI YATR 7 cut(s) 38, 122, 124, 146, 179, 236, 328
FatI CATG 3 cut(s) 36, 234, 326
FokI GGATG 2 cut(s) 229, 271
GsaI CCCAGC 1 cut(s) 216
GsuI CTGGAG 1 cut(s) 238
HaeIII GGCC 2 cut(s) 233, 310
HapII CCGG 1 cut(s) 299
Hin1II CATG 3 cut(s) 40, 238, 330
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 2 cut(s) 222, 248
HpaII CCGG 1 cut(s) 299
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 2 cut(s) 226, 299
Hpy8I GTNNAC 1 cut(s) 43
HpyAV CCTTC 3 cut(s) 202, 207, 310
Hsp92II CATG 3 cut(s) 40, 238, 330
Kpn2I TCCGGA 1 cut(s) 298
Kzo9I GATC 2 cut(s) 193, 320
LpnPI CCDG 6 cut(s) 90, 198, 241, 257, 268, 312
LweI GCATC 1 cut(s) 173
MaeIII GTNAC 1 cut(s) 110
MalI GATC 2 cut(s) 195, 322
MboI GATC 2 cut(s) 193, 320
MboII GAAGA 2 cut(s) 106, 276
MflI RGATCY 1 cut(s) 320
MhlI GDGCHC 1 cut(s) 278
MlsI TGGCCA 1 cut(s) 233
MluCI AATT 5 cut(s) 18, 46, 69, 99, 131
MluNI TGGCCA 1 cut(s) 233
MlyI GAGTC 1 cut(s) 242
MnlI CCTC 3 cut(s) 110, 141, 262
Mox20I TGGCCA 1 cut(s) 233
MroI TCCGGA 1 cut(s) 298
MscI TGGCCA 1 cut(s) 233
MseI TTAA 1 cut(s) 17
Msp20I TGGCCA 1 cut(s) 233
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 1 cut(s) 256
MvaI CCWGG 1 cut(s) 256
NcoI CCATGG 2 cut(s) 36, 234
NdeII GATC 2 cut(s) 193, 320
NlaIII CATG 3 cut(s) 40, 238, 330
PfeI GAWTC 1 cut(s) 222
PfoI TCCNGGA 1 cut(s) 254
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 254
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 1 cut(s) 254
PspPI GGNCC 1 cut(s) 308
PsuI RGATCY 1 cut(s) 320
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
SaqAI TTAA 1 cut(s) 17
Sau3AI GATC 2 cut(s) 193, 320
Sau96I GGNCC 1 cut(s) 308
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 1 cut(s) 256
SduI GDGCHC 1 cut(s) 278
SetI ASST 1 cut(s) 79
SfaNI GCATC 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
Sse9I AATT 5 cut(s) 18, 46, 69, 99, 131
SsiI CCGC 1 cut(s) 288
StyD4I CCNGG 1 cut(s) 254
StyI CCWWGG 3 cut(s) 36, 234, 311
TasI AATT 5 cut(s) 18, 46, 69, 99, 131
TatI WGTACW 1 cut(s) 64
TfiI GAWTC 1 cut(s) 222
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.