Rh7CG507900

Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001161
Physical Location & Seq
Reverse (-)
68646540 .. 68662013
15474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG507900.1

Sequence Viewer

Length: 1032 bp
ATGCATTCTCACGTGAATGCAAAAGAGGATAATGTAGATTCTAGTGGAGCAGATCAACAACATTTGCCCAGCTTGAGGACCCTCCTTAAAGTTTACAAGGATGCTATTTTCAATGAAGATGAAAAGACTGTATCCGAAATTGAGGCAAGGATAGAAGTAATAGAAAATAAGCAAAATGAATTAGTCCAGAAAGTATCATCTATATCTGCAGAGGTAACATCAGGGAAGCAAAAGCTTATCCGCTTGCAAGCAGATTTTGATAATTGTAGAAAAAGATTTGAGAAAGAGAGACTTACCGTTAGGAGTCTAAGTAGGACTGATGCTCAAGGAGAAGTAATTGAGAGCCTTTTGGCCATGGTTGACAATTTTGAGAGAGCAGAAGTACAAATCAGACCTGAACCCGAAAATGAGAAGAAAATTGATACAAGTTACCAGGGTATATACCAGCAATTTGTTGAGATTATGAAGAGTTTGCATGTGACATCTGTATCAACTATGGGAAAACCCTTTCATCCTTCGGTGCATGAAGCGATTGCACTAGAAGAGTCTCAAGAATTCCCGCCTGATGATAGTAGAGTGACTTGGGATACCTTGCCGGCTAGCATTTCAATCCATCGTTCTTCGGAGGTGTGGGAGAGAGCAGAAGAATTTTCACCAGAGAGATTTGATATGGAAGGTCCTATACCCAATGAAACGAATACAGATTTCAGGTTCATTCCATTCAGTGGAGGGCCACGAAAACATTTGAATAGCAATAGATTGAGTAGGCAAATTCCGCCTTCAATTGGTAGTCTTTCGAATTTTTTCTATCTGGACCTAATTGGCAACAAACTTCAAGGATACATCGCAGTCTATAGTGAGGCTACACCGAGTCTTGATATGTTACTATCATCTAGGAGACAATGCTCTCAGGCGGAATTCAACTCAACTTTTCAGCTCAAAGATGGTTCTAGTGCACTTATAGTTCACAATAGTCTTCTAAGTACACCAGAAACTACCTTCTTGAAACTAACAAAAATCAAAAGCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GrpE

Protein Analysis

343

Amino Acids

38.91

Weight (kDa)

5.42

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GrpE PF01025 54 - 189 6.4e-21 GrpE
p450 PF00067 201 - 246 2e-08 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 725
AciI CCGC 4 cut(s) 241, 560, 776, 914
AcoI YGGCCR 1 cut(s) 351
AcsI RAATTY 5 cut(s) 554, 647, 771, 799, 917
AcvI CACGTG 1 cut(s) 13
AfaI GTAC 2 cut(s) 384, 985
AfiI CCNNNNNNNGG 3 cut(s) 75, 725, 785
AgsI TTSAA 7 cut(s) 112, 609, 748, 783, 836, 922, 1006
AjnI CCWGG 1 cut(s) 432
AluBI AGCT 3 cut(s) 72, 235, 937
AluI AGCT 3 cut(s) 72, 235, 937
Alw21I GWGCWC 1 cut(s) 958
Alw26I GTCTC 3 cut(s) 283, 552, 892
Alw44I GTGCAC 1 cut(s) 954
AoxI GGCC 2 cut(s) 351, 731
ApaLI GTGCAC 1 cut(s) 954
ApoI RAATTY 5 cut(s) 554, 647, 771, 799, 917
Asp700I GAANNNNTTC 1 cut(s) 803
AspS9I GGNCC 4 cut(s) 78, 677, 731, 814
AsuHPI GGTGA 1 cut(s) 645
AsuII TTCGAA 1 cut(s) 797
AsuNHI GCTAGC 1 cut(s) 599
AvaII GGWCC 3 cut(s) 78, 677, 814
BaeGI GKGCMC 1 cut(s) 958
BaeI ACNNNNGTAYC 2 cut(s) 471, 504
BalI TGGCCA 1 cut(s) 353
BarI GAAGNNNNNNTAC 2 cut(s) 666, 698
BbrPI CACGTG 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 968
Bbv12I GWGCWC 1 cut(s) 958
BccI CCATC 2 cut(s) 621, 938
BciT130I CCWGG 1 cut(s) 434
BciVI GTATCC 3 cut(s) 142, 580, 833
BcoDI GTCTC 3 cut(s) 283, 552, 892
BfaI CTAG 5 cut(s) 42, 539, 600, 894, 951
BfmI CTRYAG 2 cut(s) 207, 853
BfuI GTATCC 3 cut(s) 142, 580, 833
Bme1390I CCNGG 1 cut(s) 434
Bme18I GGWCC 3 cut(s) 78, 677, 814
BmgT120I GGNCC 4 cut(s) 78, 677, 731, 814
BmiI GGNNCC 1 cut(s) 80
BmrFI CCNGG 1 cut(s) 434
BmsI GCATC 2 cut(s) 91, 310
BmtI GCTAGC 1 cut(s) 603
BpiI GAAGAC 1 cut(s) 968
Bpu14I TTCGAA 1 cut(s) 797
BpuEI CTTGAG 3 cut(s) 94, 309, 534
BsaAI YACGTR 1 cut(s) 13
BsaJI CCNNGG 2 cut(s) 354, 433
BsaXI ACNNNNNCTCC 2 cut(s) 295, 325
Bsc4I CCNNNNNNNGG 3 cut(s) 75, 725, 785
Bse118I RCCGGY 1 cut(s) 595
BseBI CCWGG 1 cut(s) 434
BseDI CCNNGG 2 cut(s) 354, 433
BseGI GGATG 2 cut(s) 106, 511
BseLI CCNNNNNNNGG 3 cut(s) 75, 725, 785
BseMII CTCAG 1 cut(s) 923
BseSI GKGCMC 1 cut(s) 958
BseYI CCCAGC 1 cut(s) 68
BshFI GGCC 2 cut(s) 353, 733
BsiHKAI GWGCWC 1 cut(s) 958
BsiSI CCGG 1 cut(s) 596
BslI CCNNNNNNNGG 3 cut(s) 75, 725, 785
BsmAI GTCTC 3 cut(s) 283, 552, 892
BsmI GAATGC 2 cut(s) 4, 22
BsnI GGCC 2 cut(s) 353, 733
Bsp119I TTCGAA 1 cut(s) 797
Bsp1286I GDGCHC 1 cut(s) 958
Bsp143I GATC 1 cut(s) 52
Bsp19I CCATGG 1 cut(s) 354
BspACI CCGC 4 cut(s) 241, 560, 776, 914
BspANI GGCC 2 cut(s) 353, 733
BspCNI CTCAG 1 cut(s) 922
BspLI GGNNCC 1 cut(s) 80
BspMAI CTGCAG 1 cut(s) 211
BspOI GCTAGC 1 cut(s) 603
BspT104I TTCGAA 1 cut(s) 797
BsrFI RCCGGY 1 cut(s) 595
BssAI RCCGGY 1 cut(s) 595
BssECI CCNNGG 2 cut(s) 354, 433
BssMI GATC 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 434
Bst4CI ACNGT 2 cut(s) 130, 298
Bst6I CTCTTC 2 cut(s) 461, 537
BstBAI YACGTR 1 cut(s) 13
BstBI TTCGAA 1 cut(s) 797
BstC8I GCNNGC 4 cut(s) 245, 249, 597, 601
BstDEI CTNAG 3 cut(s) 308, 909, 980
BstDSI CCRYGG 1 cut(s) 354
BstF5I GGATG 2 cut(s) 106, 511
BstKTI GATC 1 cut(s) 55
BstMAI GTCTC 3 cut(s) 283, 552, 892
BstMBI GATC 1 cut(s) 52
BstMWI GCNNNNNNNGC 1 cut(s) 775
BstNI CCWGG 1 cut(s) 434
BstNSI RCATGY 1 cut(s) 479
BstSCI CCNGG 1 cut(s) 432
BstSFI CTRYAG 2 cut(s) 207, 853
BstSLI GKGCMC 1 cut(s) 958
BstV2I GAAGAC 1 cut(s) 968
BsuI GTATCC 3 cut(s) 142, 580, 833
BsuRI GGCC 2 cut(s) 353, 733
BtgI CCRYGG 1 cut(s) 354
BtgZI GCGATG 1 cut(s) 829
BtsCI GGATG 2 cut(s) 106, 511
BtsIMutI CAGTG 1 cut(s) 730
Cac8I GCNNGC 4 cut(s) 245, 249, 597, 601
Cfr10I RCCGGY 1 cut(s) 595
Cfr13I GGNCC 4 cut(s) 78, 677, 731, 814
Csp6I GTAC 2 cut(s) 383, 984
CviAII CATG 3 cut(s) 355, 476, 524
CviJI RGCY 8 cut(s) 72, 235, 345, 353, 599, 733, 863, 937
CviKI_1 RGCY 8 cut(s) 72, 235, 345, 353, 599, 733, 863, 937
CviQI GTAC 2 cut(s) 383, 984
DdeI CTNAG 3 cut(s) 308, 909, 980
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
EaeI YGGCCR 1 cut(s) 351
Eam1104I CTCTTC 2 cut(s) 461, 537
EarI CTCTTC 2 cut(s) 461, 537
EciI GGCGGA 2 cut(s) 765, 929
Eco130I CCWWGG 1 cut(s) 354
Eco47I GGWCC 3 cut(s) 78, 677, 814
Eco72I CACGTG 1 cut(s) 13
EcoO109I RGGNCCY 2 cut(s) 78, 677
EcoRI GAATTC 2 cut(s) 554, 917
EcoRII CCWGG 1 cut(s) 432
EcoT14I CCWWGG 1 cut(s) 354
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 3 cut(s) 358, 479, 527
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FatI CATG 3 cut(s) 354, 475, 523
FauI CCCGC 1 cut(s) 567
FokI GGATG 2 cut(s) 113, 498
FspBI CTAG 5 cut(s) 42, 539, 600, 894, 951
GsaI CCCAGC 1 cut(s) 72
HaeIII GGCC 2 cut(s) 353, 733
HapII CCGG 1 cut(s) 596
Hin1II CATG 3 cut(s) 358, 479, 527
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 4 cut(s) 38, 304, 545, 871
HpaII CCGG 1 cut(s) 596
HphI GGTGA 1 cut(s) 645
Hpy166II GTNNAC 5 cut(s) 94, 361, 956, 967, 986
Hpy188I TCNGA 3 cut(s) 136, 392, 625
Hpy188III TCNNGA 5 cut(s) 187, 551, 812, 875, 1003
Hpy8I GTNNAC 5 cut(s) 94, 361, 956, 967, 986
HpyAV CCTTC 4 cut(s) 525, 668, 789, 1009
HpyCH4III ACNGT 2 cut(s) 130, 298
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 8 cut(s) 4, 20, 209, 247, 475, 523, 536, 956
HpyF10VI GCNNNNNNNGC 1 cut(s) 775
HpyF3I CTNAG 3 cut(s) 308, 909, 980
HpySE526I ACGT 1 cut(s) 12
Hsp92II CATG 3 cut(s) 358, 479, 527
KroI GCCGGC 1 cut(s) 595
KroNI GCCGGC 1 cut(s) 597
Kzo9I GATC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 47
LweI GCATC 2 cut(s) 91, 310
MaeI CTAG 5 cut(s) 42, 539, 600, 894, 951
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 5 cut(s) 214, 428, 478, 577, 882
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MboII GAAGA 7 cut(s) 128, 424, 478, 554, 612, 656, 968
MfeI CAATTG 1 cut(s) 783
MhlI GDGCHC 1 cut(s) 958
MlsI TGGCCA 1 cut(s) 353
MluNI TGGCCA 1 cut(s) 353
MlyI GAGTC 3 cut(s) 313, 554, 880
MnlI CCTC 8 cut(s) 19, 69, 92, 136, 205, 619, 722, 853
Mox20I TGGCCA 1 cut(s) 353
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 595
MroXI GAANNNNTTC 1 cut(s) 803
MscI TGGCCA 1 cut(s) 353
MseI TTAA 1 cut(s) 87
MslI CAYNNNNRTG 1 cut(s) 15
Msp20I TGGCCA 1 cut(s) 353
MspI CCGG 1 cut(s) 596
MspR9I CCNGG 1 cut(s) 434
MunI CAATTG 1 cut(s) 783
Mva1269I GAATGC 2 cut(s) 4, 22
MvaI CCWGG 1 cut(s) 434
MwoI GCNNNNNNNGC 1 cut(s) 775
NaeI GCCGGC 1 cut(s) 597
NcoI CCATGG 1 cut(s) 354
NdeII GATC 1 cut(s) 52
NgoMIV GCCGGC 1 cut(s) 595
NheI GCTAGC 1 cut(s) 599
NlaIII CATG 3 cut(s) 358, 479, 527
NlaIV GGNNCC 1 cut(s) 80
NmuCI GTSAC 2 cut(s) 478, 577
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 479
NspV TTCGAA 1 cut(s) 797
PctI GAATGC 2 cut(s) 4, 22
PdiI GCCGGC 1 cut(s) 597
PdmI GAANNNNTTC 1 cut(s) 803
PfeI GAWTC 1 cut(s) 38
PflMI CCANNNNNTGG 1 cut(s) 725
PleI GAGTC 3 cut(s) 312, 553, 879
PmaCI CACGTG 1 cut(s) 13
PmlI CACGTG 1 cut(s) 13
PpsI GAGTC 3 cut(s) 312, 553, 879
Ppu21I YACGTR 1 cut(s) 13
PpuMI RGGWCCY 2 cut(s) 78, 677
Psp5II RGGWCCY 2 cut(s) 78, 677
Psp6I CCWGG 1 cut(s) 432
PspCI CACGTG 1 cut(s) 13
PspFI CCCAGC 1 cut(s) 68
PspGI CCWGG 1 cut(s) 432
PspN4I GGNNCC 1 cut(s) 80
PspPI GGNCC 4 cut(s) 78, 677, 731, 814
PspPPI RGGWCCY 2 cut(s) 78, 677
PstI CTGCAG 1 cut(s) 211
RsaI GTAC 2 cut(s) 384, 985
RsaNI GTAC 2 cut(s) 383, 984
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 1 cut(s) 87
Sau3AI GATC 1 cut(s) 52
Sau96I GGNCC 4 cut(s) 78, 677, 731, 814
SchI GAGTC 3 cut(s) 313, 554, 880
ScrFI CCNGG 1 cut(s) 434
SduI GDGCHC 1 cut(s) 958
SfaNI GCATC 2 cut(s) 91, 310
SfcI CTRYAG 2 cut(s) 207, 853
SfuI TTCGAA 1 cut(s) 797
SinI GGWCC 3 cut(s) 78, 677, 814
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 3 cut(s) 73, 324, 549
SmoI CTYRAG 3 cut(s) 73, 324, 549
SsiI CCGC 4 cut(s) 241, 560, 776, 914
SspMI CTAG 5 cut(s) 42, 539, 600, 894, 951
StyD4I CCNGG 1 cut(s) 432
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 2 cut(s) 130, 298
TaiI ACGT 1 cut(s) 15
TaqI TCGA 1 cut(s) 797
TatI WGTACW 2 cut(s) 382, 983
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TscAI CASTG 1 cut(s) 730
TseFI GTSAC 2 cut(s) 478, 577
Tsp45I GTSAC 2 cut(s) 478, 577
TspDTI ATGAA 8 cut(s) 129, 135, 192, 479, 500, 540, 703, 705
TspRI CASTG 1 cut(s) 730
Van91I CCANNNNNTGG 1 cut(s) 725
VneI GTGCAC 1 cut(s) 954
VpaK11BI GGWCC 3 cut(s) 78, 677, 814
XapI RAATTY 5 cut(s) 554, 647, 771, 799, 917
XceI RCATGY 1 cut(s) 479
XmnI GAANNNNTTC 1 cut(s) 803
XspI CTAG 5 cut(s) 42, 539, 600, 894, 951
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.