RchiOBHm_Chr7g0240551

Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001161
Physical Location & Seq
Reverse (-)
66511627 .. 66514800
3174 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21558

Sequence Viewer

Length: 210 bp
ATGAGGAGCTTGGGTGTGGCCTCTGTGCCAACTAAGGGAAAACCCTTTGATCCTTCAATGCATGAAGCTATTGCACAAGAAGAGTCTCAAGAATTCCCGGAGGGGATTGTCATTCAAGAAATTCGCCGTGGCTTTTTACTTGGTGGTCGACTTCTAAGACCAGCAATGGTTAAAGTCTCTATAGGGCTGGCAGCAAGAAGACCCCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GrpE

Protein Analysis

69

Amino Acids

7.52

Weight (kDa)

10.23

Isoelectric Point (pI)

83.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GrpE PF01025 2 - 60 9.7e-20 GrpE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 148
AclWI GGATC 1 cut(s) 44
AcsI RAATTY 2 cut(s) 92, 120
AfiI CCNNNNNNNGG 1 cut(s) 35
AgsI TTSAA 2 cut(s) 57, 116
AluBI AGCT 2 cut(s) 9, 68
AluI AGCT 2 cut(s) 9, 68
Alw26I GTCTC 2 cut(s) 90, 181
AlwI GGATC 1 cut(s) 44
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 2 cut(s) 92, 120
AsuC2I CCSGG 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 203
BceAI ACGGC 1 cut(s) 111
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 2 cut(s) 90, 181
BfmI CTRYAG 1 cut(s) 180
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
Bme1390I CCNGG 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 98
BpiI GAAGAC 1 cut(s) 205
BpuEI CTTGAG 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 127
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse3DI GCAATG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 127
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMI GCAATG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 203
BshFI GGCC 1 cut(s) 20
BsiSI CCGG 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 2 cut(s) 90, 181
BsnI GGCC 1 cut(s) 20
Bsp143I GATC 1 cut(s) 49
BspANI GGCC 1 cut(s) 20
BspPI GGATC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 1 cut(s) 49
Bst6I CTCTTC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 2 cut(s) 33, 155
BstDSI CCRYGG 1 cut(s) 127
BstKTI GATC 1 cut(s) 52
BstMAI GTCTC 2 cut(s) 90, 181
BstMBI GATC 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 96
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 203
BstV2I GAAGAC 1 cut(s) 205
BsuRI GGCC 1 cut(s) 20
BtgI CCRYGG 1 cut(s) 127
Cac8I GCNNGC 1 cut(s) 189
CviAII CATG 1 cut(s) 62
CviJI RGCY 5 cut(s) 9, 20, 68, 132, 187
CviKI_1 RGCY 5 cut(s) 9, 20, 68, 132, 187
DdeI CTNAG 2 cut(s) 33, 155
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
EcoRI GAATTC 1 cut(s) 92
EcoT22I ATGCAT 1 cut(s) 63
FaeI CATG 1 cut(s) 65
FaiI YATR 2 cut(s) 63, 182
FatI CATG 1 cut(s) 61
FblI GTMKAC 1 cut(s) 148
Fnu4HI GCNGC 1 cut(s) 192
Fsp4HI GCNGC 1 cut(s) 192
GluI GCNGC 1 cut(s) 192
HaeIII GGCC 1 cut(s) 20
HapII CCGG 1 cut(s) 98
Hin1II CATG 1 cut(s) 65
HincII GTYRAC 1 cut(s) 149
HindII GTYRAC 1 cut(s) 149
HinfI GANTC 1 cut(s) 83
HpaII CCGG 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 149
Hpy188III TCNNGA 2 cut(s) 89, 116
Hpy8I GTNNAC 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 63
HpyCH4V TGCA 2 cut(s) 61, 74
HpyF3I CTNAG 2 cut(s) 33, 155
Hsp92II CATG 1 cut(s) 65
Kzo9I GATC 1 cut(s) 49
LmnI GCTCC 1 cut(s) 6
LpnPI CCDG 3 cut(s) 111, 173, 174
Lsp1109I GCAGC 1 cut(s) 203
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MboII GAAGA 2 cut(s) 92, 210
MluCI AATT 2 cut(s) 92, 120
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 2 cut(s) 31, 94
Mph1103I ATGCAT 1 cut(s) 63
MseI TTAA 1 cut(s) 171
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 98
NciI CCSGG 1 cut(s) 98
NdeII GATC 1 cut(s) 49
NlaIII CATG 1 cut(s) 65
NsiI ATGCAT 1 cut(s) 63
PfoI TCCNGGA 1 cut(s) 96
PkrI GCNGC 1 cut(s) 193
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
SalI GTCGAC 1 cut(s) 147
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 1 cut(s) 192
Sau3AI GATC 1 cut(s) 49
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 98
SetI ASST 2 cut(s) 11, 70
SfcI CTRYAG 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
Sse9I AATT 2 cut(s) 92, 120
StyD4I CCNGG 1 cut(s) 96
TaqI TCGA 1 cut(s) 148
TasI AATT 2 cut(s) 92, 120
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TseI GCWGC 1 cut(s) 191
TspDTI ATGAA 1 cut(s) 78
XapI RAATTY 2 cut(s) 92, 120
XmiI GTMKAC 1 cut(s) 148
Zsp2I ATGCAT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.