Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024557.1

Orthogroup ID

OG0001161

Physical Location & Seq

Genomic Coordinates Forward (+)

2403 .. 3824

Gene Structure 1422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024557.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atggttgacaattttgagagagcagaagtacaaatcagacctgaacccgaaaatgagaagaaaattgatacaagttaccagggtatataccagcaatttgttgagattatgaagagtttgcatgtgacatctgtatcaactatgggaaaaccctttcatccttcggtgcatgaagcgattgcactagaagagtctcaagaattcccggtgggaattgtcattcaagaaattcgccatggctttttacttggtggtcgacttctaagaccagcaatggttattgtctctatgggcctggcagtaagaaaacccctgtggccactgaaaaatcatcagggtcaccagcaacagctgcttcggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GrpE

Protein Analysis

120

Amino Acids

13.74

Weight (kDa)

7.03

Isoelectric Point (pI)

37.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36390 AT1G36390
fragaria_vesca	FvH4_5g38490 FvH4_5g38490 FvH4_5g38550 FvH4_5g38590 FvH4_5g38670 FvH4_5g38670 FvH4_5g38670 FvH4_5g38670 FvH4_5g38670
malus_domestica	MD00G1103800.v1.1 MD15G1359500.v1.1
prunus_persica	Prupe.1G507100_v2.0.a1
pyrus_communis	pycom08g14880 pycom15g32190
rosa_chinensis	RchiOBHm_Chr7g0240521 RchiOBHm_Chr7g0240551 RchiOBHm_Chr7g0240561
rosa_laevigata	RLG00000000628 RLG00000000650 RLG00000000665 RLG00000007790
rosa_multiflora	Rmu_sc0001070.1_g000034 Rmu_sc0002551.1_g000025 Rmu_sc0002551.1_g000035 Rmu_sc0005071.1_g000018 Rmu_sc0008477.1_g000007 Rmu_sc0020449.1_g000001 Rmu_sc0024557.1_g000002
rosa_roxburghii	Rroxscaffold_3G00219680 Rroxscaffold_3G00219830 Rroxscaffold_3G00219840 Rroxscaffold_3G00219900
rosa_rugosa	Rorug07G0336900 Rorug07G0337300 Rorug07G0337400 Rorug07G0338300
rosa_samantha	Rh2AG294800 Rh7AG491400 Rh7AG491800 Rh7AG491900 Rh7AG492700 Rh7BG464000 Rh7BG464300 Rh7CG507400 Rh7CG507900 Rh7CG508100 Rh7CG509800 Rh7DG475200 Rh7DG475500 Rh7DG477400
rosa_wichuraiana	Rw0G013470 Rw7G041170 Rw7G041290 Rw7G041400 Rw7G041430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	256
AcoI	YGGCCR	1 cut(s)	317
AcsI	RAATTY	2 cut(s)	200, 228
AfaI	GTAC	1 cut(s)	30
AgsI	TTSAA	1 cut(s)	224
AjnI	CCWGG	2 cut(s)	78, 294
AluBI	AGCT	1 cut(s)	352
AluI	AGCT	1 cut(s)	352
Alw26I	GTCTC	2 cut(s)	198, 289
AoxI	GGCC	2 cut(s)	292, 317
ApeKI	GCWGC	1 cut(s)	352
ApoI	RAATTY	2 cut(s)	200, 228
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	332
BaeI	ACNNNNGTAYC	2 cut(s)	117, 150
BalI	TGGCCA	1 cut(s)	319
BbvI	GCAGC	1 cut(s)	339
BciT130I	CCWGG	2 cut(s)	80, 296
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	2 cut(s)	198, 289
BfaI	CTAG	1 cut(s)	185
BisI	GCNGC	1 cut(s)	353
BlsI	GCNGC	1 cut(s)	354
Bme1390I	CCNGG	3 cut(s)	80, 206, 296
BmgT120I	GGNCC	1 cut(s)	292
BmrFI	CCNGG	3 cut(s)	80, 206, 296
BpuEI	CTTGAG	1 cut(s)	180
BpuMI	CCSGG	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	79, 235
Bse3DI	GCAATG	1 cut(s)	279
BseBI	CCWGG	2 cut(s)	80, 296
BseDI	CCNNGG	2 cut(s)	79, 235
BseGI	GGATG	1 cut(s)	157
BseMI	GCAATG	1 cut(s)	279
BseXI	GCAGC	1 cut(s)	339
BshFI	GGCC	2 cut(s)	294, 319
BsiSI	CCGG	1 cut(s)	206
BsmAI	GTCTC	2 cut(s)	198, 289
BsnI	GGCC	2 cut(s)	294, 319
Bsp19I	CCATGG	1 cut(s)	235
BspANI	GGCC	2 cut(s)	294, 319
BsrDI	GCAATG	1 cut(s)	279
BssECI	CCNNGG	2 cut(s)	79, 235
BssT1I	CCWWGG	1 cut(s)	235
Bst2UI	CCWGG	2 cut(s)	80, 296
Bst6I	CTCTTC	2 cut(s)	107, 183
BstAPI	GCANNNNNTGC	1 cut(s)	352
BstDEI	CTNAG	1 cut(s)	263
BstDSI	CCRYGG	1 cut(s)	235
BstEII	GGTNACC	1 cut(s)	338
BstF5I	GGATG	1 cut(s)	157
BstMAI	GTCTC	2 cut(s)	198, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstNI	CCWGG	2 cut(s)	80, 296
BstNSI	RCATGY	1 cut(s)	125
BstPI	GGTNACC	1 cut(s)	338
BstSCI	CCNGG	3 cut(s)	78, 204, 294
BstV1I	GCAGC	1 cut(s)	339
BsuRI	GGCC	2 cut(s)	294, 319
BtgI	CCRYGG	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	157
BtsIMutI	CAGTG	1 cut(s)	320
Cfr13I	GGNCC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	3 cut(s)	122, 170, 236
CviJI	RGCY	4 cut(s)	240, 294, 319, 352
CviKI_1	RGCY	4 cut(s)	240, 294, 319, 352
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	1 cut(s)	263
EaeI	YGGCCR	1 cut(s)	317
Eam1104I	CTCTTC	2 cut(s)	107, 183
EarI	CTCTTC	2 cut(s)	107, 183
Eco130I	CCWWGG	1 cut(s)	235
Eco91I	GGTNACC	1 cut(s)	338
EcoO65I	GGTNACC	1 cut(s)	338
EcoRI	GAATTC	1 cut(s)	200
EcoRII	CCWGG	2 cut(s)	78, 294
EcoT14I	CCWWGG	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	235
FaeI	CATG	3 cut(s)	125, 173, 239
FaiI	YATR	8 cut(s)	86, 88, 110, 123, 143, 171, 237, 290
FatI	CATG	3 cut(s)	121, 169, 235
FblI	GTMKAC	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	353
FokI	GGATG	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	353
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	1 cut(s)	353
HaeIII	GGCC	2 cut(s)	294, 319
HapII	CCGG	1 cut(s)	206
Hin1II	CATG	3 cut(s)	125, 173, 239
HincII	GTYRAC	2 cut(s)	7, 257
HindII	GTYRAC	2 cut(s)	7, 257
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	2 cut(s)	7, 257
Hpy188I	TCNGA	1 cut(s)	38
Hpy188III	TCNNGA	2 cut(s)	197, 224
Hpy8I	GTNNAC	2 cut(s)	7, 257
HpyAV	CCTTC	1 cut(s)	171
HpyCH4V	TGCA	3 cut(s)	121, 169, 182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpyF3I	CTNAG	1 cut(s)	263
Hsp92II	CATG	3 cut(s)	125, 173, 239
Lsp1109I	GCAGC	1 cut(s)	339
MaeI	CTAG	1 cut(s)	185
MaeIII	GTNAC	3 cut(s)	74, 124, 338
MboII	GAAGA	3 cut(s)	70, 124, 200
MlsI	TGGCCA	1 cut(s)	319
MluCI	AATT	6 cut(s)	10, 63, 95, 200, 213, 228
MluNI	TGGCCA	1 cut(s)	319
MlyI	GAGTC	1 cut(s)	200
Mox20I	TGGCCA	1 cut(s)	319
MscI	TGGCCA	1 cut(s)	319
Msp20I	TGGCCA	1 cut(s)	319
MspA1I	CMGCKG	1 cut(s)	352
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	3 cut(s)	80, 206, 296
MvaI	CCWGG	2 cut(s)	80, 296
MwoI	GCNNNNNNNGC	1 cut(s)	352
NciI	CCSGG	1 cut(s)	206
NcoI	CCATGG	1 cut(s)	235
NlaIII	CATG	3 cut(s)	125, 173, 239
NmuCI	GTSAC	2 cut(s)	124, 338
NspI	RCATGY	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	354
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Psp6I	CCWGG	2 cut(s)	78, 294
PspEI	GGTNACC	1 cut(s)	338
PspGI	CCWGG	2 cut(s)	78, 294
PspPI	GGNCC	1 cut(s)	292
PvuII	CAGCTG	1 cut(s)	352
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
SalI	GTCGAC	1 cut(s)	255
SatI	GCNGC	1 cut(s)	353
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	3 cut(s)	80, 206, 296
SetI	ASST	2 cut(s)	43, 354
SmlI	CTYRAG	1 cut(s)	195
SmoI	CTYRAG	1 cut(s)	195
Sse9I	AATT	6 cut(s)	10, 63, 95, 200, 213, 228
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	3 cut(s)	78, 204, 294
StyI	CCWWGG	1 cut(s)	235
TaqI	TCGA	1 cut(s)	256
TasI	AATT	6 cut(s)	10, 63, 95, 200, 213, 228
TatI	WGTACW	1 cut(s)	28
TscAI	CASTG	1 cut(s)	327
TseFI	GTSAC	2 cut(s)	124, 338
TseI	GCWGC	1 cut(s)	352
Tsp45I	GTSAC	2 cut(s)	124, 338
TspDTI	ATGAA	3 cut(s)	125, 146, 186
TspRI	CASTG	1 cut(s)	327
XapI	RAATTY	2 cut(s)	200, 228
XceI	RCATGY	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	256
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.