Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001161

Physical Location & Seq

Genomic Coordinates Forward (+)

2023493 .. 2028831

Gene Structure 5339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00219840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGAAGAGTTTGCGTGTGACATCTGTATCAACTATGGGAAAACCCTTTCATCCTTCGGTGCATGAAGCGATTGCACTAGAAGAGTCTCAAGAATTCCCGGTGGGAATTGTCATTCAAGAAATTCGCCATGGCTTTTTACTTGGTGGTCGACTTCTAAGACCAGCAATGGTTATTGTCTCTATGGGCCTGGCAGTAAGAAAACCCCCGTGGCCACTGAAAAATCATCAGGGTCACCTGCAACAGCTGCTTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GrpE

Protein Analysis

84

Amino Acids

9.4

Weight (kDa)

10.9

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GrpE	PF01025	2 - 60	9.7e-16	GrpE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36390 AT1G36390
fragaria_vesca	FvH4_5g38490 FvH4_5g38490 FvH4_5g38550 FvH4_5g38590 FvH4_5g38670 FvH4_5g38670 FvH4_5g38670 FvH4_5g38670 FvH4_5g38670
malus_domestica	MD00G1103800.v1.1 MD15G1359500.v1.1
prunus_persica	Prupe.1G507100_v2.0.a1
pyrus_communis	pycom08g14880 pycom15g32190
rosa_chinensis	RchiOBHm_Chr7g0240521 RchiOBHm_Chr7g0240551 RchiOBHm_Chr7g0240561
rosa_laevigata	RLG00000000628 RLG00000000650 RLG00000000665 RLG00000007790
rosa_multiflora	Rmu_sc0001070.1_g000034 Rmu_sc0002551.1_g000025 Rmu_sc0002551.1_g000035 Rmu_sc0005071.1_g000018 Rmu_sc0008477.1_g000007 Rmu_sc0020449.1_g000001 Rmu_sc0024557.1_g000002
rosa_roxburghii	Rroxscaffold_3G00219680 Rroxscaffold_3G00219830 Rroxscaffold_3G00219840 Rroxscaffold_3G00219900
rosa_rugosa	Rorug07G0336900 Rorug07G0337300 Rorug07G0337400 Rorug07G0338300
rosa_samantha	Rh2AG294800 Rh7AG491400 Rh7AG491800 Rh7AG491900 Rh7AG492700 Rh7BG464000 Rh7BG464300 Rh7CG507400 Rh7CG507900 Rh7CG508100 Rh7CG509800 Rh7DG475200 Rh7DG475500 Rh7DG477400
rosa_wichuraiana	Rw0G013470 Rw7G041170 Rw7G041290 Rw7G041400 Rw7G041430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	243
Acc36I	ACCTGC	1 cut(s)	243
AccI	GTMKAC	1 cut(s)	148
AcoI	YGGCCR	1 cut(s)	209
AcsI	RAATTY	2 cut(s)	92, 120
AgsI	TTSAA	1 cut(s)	116
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	1 cut(s)	244
AluI	AGCT	1 cut(s)	244
Alw26I	GTCTC	2 cut(s)	90, 181
AoxI	GGCC	2 cut(s)	184, 209
ApeKI	GCWGC	1 cut(s)	244
ApoI	RAATTY	2 cut(s)	92, 120
AspS9I	GGNCC	1 cut(s)	184
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	224
BaeI	ACNNNNGTAYC	2 cut(s)	9, 42
BalI	TGGCCA	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	231
BciT130I	CCWGG	1 cut(s)	188
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	2 cut(s)	90, 181
BfaI	CTAG	1 cut(s)	77
BfuAI	ACCTGC	1 cut(s)	243
BisI	GCNGC	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	246
Bme1390I	CCNGG	2 cut(s)	98, 188
BmgT120I	GGNCC	1 cut(s)	184
BmrFI	CCNGG	2 cut(s)	98, 188
BpuEI	CTTGAG	1 cut(s)	72
BpuMI	CCSGG	1 cut(s)	98
BsaJI	CCNNGG	2 cut(s)	127, 206
Bse3DI	GCAATG	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	2 cut(s)	127, 206
BseGI	GGATG	1 cut(s)	49
BseMI	GCAATG	1 cut(s)	171
BseXI	GCAGC	1 cut(s)	231
BshFI	GGCC	2 cut(s)	186, 211
BsiSI	CCGG	1 cut(s)	98
BsmAI	GTCTC	2 cut(s)	90, 181
BsnI	GGCC	2 cut(s)	186, 211
Bsp19I	CCATGG	1 cut(s)	127
BspANI	GGCC	2 cut(s)	186, 211
BspMI	ACCTGC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	171
BssECI	CCNNGG	2 cut(s)	127, 206
BssT1I	CCWWGG	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	188
Bst6I	CTCTTC	1 cut(s)	75
BstAPI	GCANNNNNTGC	1 cut(s)	244
BstDEI	CTNAG	1 cut(s)	155
BstDSI	CCRYGG	2 cut(s)	127, 206
BstEII	GGTNACC	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	49
BstMAI	GTCTC	2 cut(s)	90, 181
BstMWI	GCNNNNNNNGC	1 cut(s)	244
BstNI	CCWGG	1 cut(s)	188
BstPI	GGTNACC	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	96, 186
BstV1I	GCAGC	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	186, 211
BtgI	CCRYGG	2 cut(s)	127, 206
BtsCI	GGATG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	212
BveI	ACCTGC	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	184
CviAII	CATG	2 cut(s)	62, 128
CviJI	RGCY	4 cut(s)	132, 186, 211, 244
CviKI_1	RGCY	4 cut(s)	132, 186, 211, 244
DdeI	CTNAG	1 cut(s)	155
EaeI	YGGCCR	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	127
Eco91I	GGTNACC	1 cut(s)	230
EcoO65I	GGTNACC	1 cut(s)	230
EcoRI	GAATTC	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	186
EcoT14I	CCWWGG	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	2 cut(s)	65, 131
FaiI	YATR	4 cut(s)	35, 63, 129, 182
FatI	CATG	2 cut(s)	61, 127
FblI	GTMKAC	1 cut(s)	148
Fnu4HI	GCNGC	1 cut(s)	245
FokI	GGATG	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	245
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	1 cut(s)	245
HaeIII	GGCC	2 cut(s)	186, 211
HapII	CCGG	1 cut(s)	98
Hin1II	CATG	2 cut(s)	65, 131
HincII	GTYRAC	1 cut(s)	149
HindII	GTYRAC	1 cut(s)	149
HinfI	GANTC	1 cut(s)	83
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188III	TCNNGA	2 cut(s)	89, 116
Hpy8I	GTNNAC	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	63
HpyCH4V	TGCA	3 cut(s)	61, 74, 238
HpyF10VI	GCNNNNNNNGC	1 cut(s)	244
HpyF3I	CTNAG	1 cut(s)	155
Hsp92II	CATG	2 cut(s)	65, 131
LpnPI	CCDG	6 cut(s)	111, 173, 174, 200, 212, 248
Lsp1109I	GCAGC	1 cut(s)	231
MaeI	CTAG	1 cut(s)	77
MaeIII	GTNAC	2 cut(s)	16, 230
MboII	GAAGA	2 cut(s)	16, 92
MlsI	TGGCCA	1 cut(s)	211
MluCI	AATT	3 cut(s)	92, 105, 120
MluNI	TGGCCA	1 cut(s)	211
MlyI	GAGTC	1 cut(s)	92
Mox20I	TGGCCA	1 cut(s)	211
MscI	TGGCCA	1 cut(s)	211
Msp20I	TGGCCA	1 cut(s)	211
MspA1I	CMGCKG	1 cut(s)	244
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	2 cut(s)	98, 188
MvaI	CCWGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	244
NciI	CCSGG	1 cut(s)	98
NcoI	CCATGG	1 cut(s)	127
NlaIII	CATG	2 cut(s)	65, 131
NmuCI	GTSAC	2 cut(s)	16, 230
PaqCI	CACCTGC	1 cut(s)	243
PkrI	GCNGC	1 cut(s)	246
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	186
PspEI	GGTNACC	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	186
PspPI	GGNCC	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	244
SalI	GTCGAC	1 cut(s)	147
SatI	GCNGC	1 cut(s)	245
Sau96I	GGNCC	1 cut(s)	184
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	2 cut(s)	98, 188
SetI	ASST	2 cut(s)	237, 246
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
Sse9I	AATT	3 cut(s)	92, 105, 120
SspMI	CTAG	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	96, 186
StyI	CCWWGG	1 cut(s)	127
TaqI	TCGA	1 cut(s)	148
TasI	AATT	3 cut(s)	92, 105, 120
TscAI	CASTG	1 cut(s)	219
TseFI	GTSAC	2 cut(s)	16, 230
TseI	GCWGC	1 cut(s)	244
Tsp45I	GTSAC	2 cut(s)	16, 230
TspDTI	ATGAA	3 cut(s)	17, 38, 78
TspRI	CASTG	1 cut(s)	219
XapI	RAATTY	2 cut(s)	92, 120
XmiI	GTMKAC	1 cut(s)	148
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.