Rh7AG491800

Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001161
Physical Location & Seq
Reverse (-)
69205286 .. 69208266
2981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG491800.1

Sequence Viewer

Length: 711 bp
ATGGTTGACAATTCTGAGAGAGCAGAAGTACAAGTCAGACCTGAAACTGAAAATGAGAAGAAAATTGATACAAGTTCCGAGGGTATATACAAGCAATTTGTTGAGATTATGAAGAGTTTGCATGTGGCATCTGTATCAACTATGGGAAAACCCTTTCATCCTTCGGTGCATGAAGTGATTGCACGAGAAGGGCCTCAAGAATTCCCAGAGGGGTTGTCATTCAAGAAATTCGCCGTGGCTTTTTACTTTTGGTTGACTTCTAAGACCAGCAATGTAAGAAAACCCGTGGCCACTGAGAAATCATCAGGGTCACCTGCAACAGCTGCTTTGGTAGAGAATTGGGATGATGTAAGGATGATGAAACAGGATTGGGATCGTAAGTTGCAACGGTATGCTGCTTTTTATGTCAACTATTTGATATGGGTTATAGGACAATCTCACATTGCAGATACGTTCCCCTCTGTCGATTGTTGCCATTGCTATCAATGGCAACAGAAAACGAAAATACACTGTGAAGTAGGCACTGGAGAAGGGAATCTGATTCCTATTTCAGAAGTACAAGAAGATGTAGTAGCTGCATATAGAAAGGACATTGAGTGGCAGACAAGTGAGCTGCTTCTTCCACACAAGAAAATGTGTGCTCTTAAGAAGGTGCAAGTTGATGTTGTAGTCATCAAGTCATTGAGTCAAATAATGTGGCAAATGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GrpE

Protein Analysis

236

Amino Acids

27.08

Weight (kDa)

6.39

Isoelectric Point (pI)

37.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GrpE PF01025 2 - 71 1.2e-06 GrpE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 322
Acc36I ACCTGC 1 cut(s) 322
AclWI GGATC 1 cut(s) 381
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 2 cut(s) 200, 227
AfaI GTAC 2 cut(s) 30, 558
AflII CTTAAG 1 cut(s) 644
AgsI TTSAA 1 cut(s) 223
AluBI AGCT 3 cut(s) 323, 575, 613
AluI AGCT 3 cut(s) 323, 575, 613
Alw21I GWGCWC 1 cut(s) 643
AlwI GGATC 1 cut(s) 381
AoxI GGCC 2 cut(s) 191, 288
ApeKI GCWGC 4 cut(s) 323, 395, 575, 613
ApoI RAATTY 2 cut(s) 200, 227
AspS9I GGNCC 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 303
BalI TGGCCA 1 cut(s) 290
BauI CACGAG 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 643
BbvI GCAGC 4 cut(s) 310, 382, 562, 600
BceAI ACGGC 1 cut(s) 218
BfrI CTTAAG 1 cut(s) 644
BfuAI ACCTGC 1 cut(s) 322
BisI GCNGC 4 cut(s) 324, 396, 576, 614
BlsI GCNGC 4 cut(s) 325, 397, 577, 615
BmgT120I GGNCC 1 cut(s) 191
BmsI GCATC 1 cut(s) 137
BpmI CTGGAG 1 cut(s) 546
BpuEI CTTGAG 1 cut(s) 180
BsaBI GATNNNNATC 1 cut(s) 372
BsaJI CCNNGG 3 cut(s) 78, 234, 285
Bse1I ACTGG 1 cut(s) 529
Bse3DI GCAATG 3 cut(s) 277, 441, 475
Bse8I GATNNNNATC 1 cut(s) 372
BseDI CCNNGG 3 cut(s) 78, 234, 285
BseGI GGATG 3 cut(s) 157, 349, 360
BseJI GATNNNNATC 1 cut(s) 372
BseMI GCAATG 3 cut(s) 277, 441, 475
BseMII CTCAG 2 cut(s) 6, 285
BseNI ACTGG 1 cut(s) 529
BseXI GCAGC 4 cut(s) 310, 382, 562, 600
BshFI GGCC 2 cut(s) 193, 290
BsiHKAI GWGCWC 1 cut(s) 643
BsnI GGCC 2 cut(s) 193, 290
Bsp1286I GDGCHC 1 cut(s) 643
Bsp143I GATC 1 cut(s) 373
BspANI GGCC 2 cut(s) 193, 290
BspCNI CTCAG 2 cut(s) 7, 286
BspMI ACCTGC 1 cut(s) 322
BspPI GGATC 1 cut(s) 381
BspTI CTTAAG 1 cut(s) 644
BsrDI GCAATG 3 cut(s) 277, 441, 475
BsrI ACTGG 1 cut(s) 529
BssECI CCNNGG 3 cut(s) 78, 234, 285
BssMI GATC 1 cut(s) 373
BssSI CACGAG 1 cut(s) 183
Bst2BI CACGAG 1 cut(s) 183
Bst4CI ACNGT 2 cut(s) 390, 512
Bst6I CTCTTC 1 cut(s) 107
BstAFI CTTAAG 1 cut(s) 644
BstAPI GCANNNNNTGC 1 cut(s) 323
BstDEI CTNAG 3 cut(s) 15, 261, 294
BstDSI CCRYGG 2 cut(s) 234, 285
BstEII GGTNACC 1 cut(s) 309
BstF5I GGATG 3 cut(s) 157, 349, 360
BstKTI GATC 1 cut(s) 376
BstMBI GATC 1 cut(s) 373
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNSI RCATGY 1 cut(s) 125
BstPI GGTNACC 1 cut(s) 309
BstV1I GCAGC 4 cut(s) 310, 382, 562, 600
BsuRI GGCC 2 cut(s) 193, 290
BtgI CCRYGG 2 cut(s) 234, 285
BtsCI GGATG 3 cut(s) 157, 349, 360
BtsIMutI CAGTG 3 cut(s) 291, 508, 522
BveI ACCTGC 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 191
Csp6I GTAC 2 cut(s) 29, 557
CspCI CAANNNNNGTGG 1 cut(s) 677
CviAII CATG 2 cut(s) 122, 170
CviJI RGCY 6 cut(s) 193, 239, 290, 323, 575, 613
CviKI_1 RGCY 6 cut(s) 193, 239, 290, 323, 575, 613
CviQI GTAC 2 cut(s) 29, 557
DdeI CTNAG 3 cut(s) 15, 261, 294
DpnI GATC 1 cut(s) 375
DpnII GATC 1 cut(s) 373
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 1 cut(s) 107
EarI CTCTTC 1 cut(s) 107
Eco91I GGTNACC 1 cut(s) 309
EcoO109I RGGNCCY 1 cut(s) 191
EcoO65I GGTNACC 1 cut(s) 309
EcoRI GAATTC 1 cut(s) 200
FaeI CATG 2 cut(s) 125, 173
FatI CATG 2 cut(s) 121, 169
Fnu4HI GCNGC 4 cut(s) 324, 396, 576, 614
FokI GGATG 3 cut(s) 144, 356, 367
Fsp4HI GCNGC 4 cut(s) 324, 396, 576, 614
GluI GCNGC 4 cut(s) 324, 396, 576, 614
GsuI CTGGAG 1 cut(s) 546
HaeIII GGCC 2 cut(s) 193, 290
Hin1II CATG 2 cut(s) 125, 173
HincII GTYRAC 3 cut(s) 7, 255, 409
HindII GTYRAC 3 cut(s) 7, 255, 409
HinfI GANTC 3 cut(s) 535, 541, 685
HphI GGTGA 1 cut(s) 303
Hpy166II GTNNAC 3 cut(s) 7, 255, 409
Hpy188I TCNGA 5 cut(s) 16, 38, 79, 540, 553
Hpy188III TCNNGA 2 cut(s) 197, 223
Hpy8I GTNNAC 3 cut(s) 7, 255, 409
HpyAV CCTTC 4 cut(s) 171, 182, 524, 643
HpyCH4III ACNGT 2 cut(s) 390, 512
HpyCH4IV ACGT 1 cut(s) 452
HpyCH4V TGCA 9 cut(s) 121, 169, 182, 317, 385, 446, 578, 655, 706
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 3 cut(s) 15, 261, 294
HpySE526I ACGT 1 cut(s) 452
Hsp92II CATG 2 cut(s) 125, 173
Kzo9I GATC 1 cut(s) 373
LpnPI CCDG 7 cut(s) 54, 219, 280, 291, 327, 350, 510
Lsp1109I GCAGC 4 cut(s) 310, 382, 562, 600
LweI GCATC 1 cut(s) 137
MaeII ACGT 1 cut(s) 452
MaeIII GTNAC 1 cut(s) 309
MalI GATC 1 cut(s) 375
MboI GATC 1 cut(s) 373
MboII GAAGA 4 cut(s) 70, 124, 575, 611
MhlI GDGCHC 1 cut(s) 643
MlsI TGGCCA 1 cut(s) 290
MluCI AATT 6 cut(s) 10, 63, 95, 200, 227, 337
MluNI TGGCCA 1 cut(s) 290
MlyI GAGTC 1 cut(s) 694
MnlI CCTC 4 cut(s) 73, 202, 204, 469
Mox20I TGGCCA 1 cut(s) 290
MscI TGGCCA 1 cut(s) 290
MseI TTAA 1 cut(s) 645
Msp20I TGGCCA 1 cut(s) 290
MspA1I CMGCKG 1 cut(s) 323
MspCI CTTAAG 1 cut(s) 644
MwoI GCNNNNNNNGC 1 cut(s) 323
NdeII GATC 1 cut(s) 373
NlaIII CATG 2 cut(s) 125, 173
NmuCI GTSAC 1 cut(s) 309
NspI RCATGY 1 cut(s) 125
PaqCI CACCTGC 1 cut(s) 322
PfeI GAWTC 2 cut(s) 535, 541
PkrI GCNGC 4 cut(s) 325, 397, 577, 615
PleI GAGTC 1 cut(s) 693
PpsI GAGTC 1 cut(s) 693
PspEI GGTNACC 1 cut(s) 309
PspPI GGNCC 1 cut(s) 191
PvuII CAGCTG 1 cut(s) 323
RsaI GTAC 2 cut(s) 30, 558
RsaNI GTAC 2 cut(s) 29, 557
SaqAI TTAA 1 cut(s) 645
SatI GCNGC 4 cut(s) 324, 396, 576, 614
Sau3AI GATC 1 cut(s) 373
Sau96I GGNCC 1 cut(s) 191
SchI GAGTC 1 cut(s) 694
SduI GDGCHC 1 cut(s) 643
SetI ASST 7 cut(s) 43, 316, 325, 455, 577, 615, 654
SfaNI GCATC 1 cut(s) 137
SmlI CTYRAG 2 cut(s) 195, 644
SmoI CTYRAG 2 cut(s) 195, 644
Sse9I AATT 6 cut(s) 10, 63, 95, 200, 227, 337
TaaI ACNGT 2 cut(s) 390, 512
TaiI ACGT 1 cut(s) 455
TaqI TCGA 1 cut(s) 465
TasI AATT 6 cut(s) 10, 63, 95, 200, 227, 337
TatI WGTACW 2 cut(s) 28, 556
TfiI GAWTC 2 cut(s) 535, 541
Tru1I TTAA 1 cut(s) 645
Tru9I TTAA 1 cut(s) 645
TscAI CASTG 3 cut(s) 298, 515, 529
TseFI GTSAC 1 cut(s) 309
TseI GCWGC 4 cut(s) 323, 395, 575, 613
Tsp45I GTSAC 1 cut(s) 309
TspDTI ATGAA 4 cut(s) 125, 146, 186, 374
TspRI CASTG 3 cut(s) 298, 515, 529
Vha464I CTTAAG 1 cut(s) 644
XapI RAATTY 2 cut(s) 200, 227
XceI RCATGY 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.