AT1G54340

Belongs to the isocitrate and isopropylmalate dehydrogenases family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
20283326 .. 20286786
3461 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G54340.2

Sequence Viewer

Length: 1251 bp
ATGGAATTCGAGAAGATCAAGGTGATCAATCCCGTTGTTGAAATGGATGGAGACGAAATGACTCGAGTTATCTGGAAATTCATCAAAGACAAGCTTATTTTCCCTTTCCTGGAGCTGGATATCAAATACTTTGATCTTGGACTGCCTAACCGCGATTTCACTGATGATAAGGTTACTATAGAGACTGCTGAAGCTACTTTAAAGTATAATGTGGCTATTAAGTGTGCGACGATTACTCCGGATGAAGCTCGTGTTAGGGAGTTCGGCTTAAAGAAAATGTGGAGGAGTCCTAATGGAACTATAAGGAACATTTTAAACGGCACAGTTTTCAGGGAACCTATCATTTGCAGAAACATCCCTCGTCTTGTTCCAGGATGGACGAAGCCAATCTGTATTGGAAGGCATGCTTTTGGTGATCAGTATAGAGCCACTGATCTCATTGTCAATGAACCAGGAAAACTGAAACTAGTTTTTGAGCCAAGTGGATCTTCTCAGAAAACAGAATTCGAAGTCTTCAATTTCACCGGTGGAGGTGTTGCTTTAGCCATGTATAACACTGATGAGTCTATTCGTGCATTTGCTGAGTCCTCGATGTACACAGCTTACCAGAAAAAGTGGCCACTTTACCTCTCCACAAAAAACACCATCCTCAAAATATATGATGGAAGATTCAAGGATATATTCCAAGAAGTTTATGAAGCTAACTGGAGATCCAAGTATGAAGCAGCAGGGATATGGTATGAGCATCGTTTGATAGATGATATGGTTGCATATGCCATGAAAAGTGAAGGGGGTTACGTCTGGGCATGCAAGAATTACGATGGAGATGTACAGAGCGATTTCTTAGCCCAAGGATATGGATCTCTGGGAATGATGACTTCGGTGTTGGTTTGTCCAGATGGAAAGACCATTGAAGCAGAAGCAGCTCATGGCACAGTTACACGCCACTACAGAGTTCACCAGAAAGGTGGTGAAACAAGCACCAACAGCATAGCCTCTATTTTTGCTTGGTCCAGAGGCCTTGCCCACAGGGCAAAGCTGGACAGCAATGCCGCACTCTTGAGCTATACTGAGAAACTAGAAGCAGCTTGCATGGGGACGGTGGAGTCTGGCAAAATGACCAAGGATCTAGCTCTTCTGATCCACGGAGCCAAGGTTAGGAGGGATCAGTATGTGAATACGGAAGAGTTCATTGATGCGGTGGCATGGGAGTTAAAAAGAAGATTGTTAGGCAACAACTCCAGGTTGTGA

Protein Analysis

416

Amino Acids

47.23

Weight (kDa)

7.58

Isoelectric Point (pI)

30.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Iso_dh PF00180 8 - 296 5.1e-57 Isocitrate/isopropylmalate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1105
AccII CGCG 1 cut(s) 153
AccIII TCCGGA 1 cut(s) 238
AciI CCGC 3 cut(s) 151, 1053, 1199
AclWI GGATC 6 cut(s) 493, 705, 868, 1134, 1135, 1173
AcoI YGGCCR 1 cut(s) 617
AcsI RAATTY 3 cut(s) 5, 77, 503
AcuI CTGAAG 1 cut(s) 210
AfaI GTAC 2 cut(s) 596, 831
AfiI CCNNNNNNNGG 3 cut(s) 109, 115, 1158
AgeI ACCGGT 1 cut(s) 524
AgsI TTSAA 4 cut(s) 41, 517, 673, 914
AhlI ACTAGT 1 cut(s) 466
AjnI CCWGG 4 cut(s) 108, 370, 451, 1241
AjuI GAANNNNNNNTTGG 2 cut(s) 472, 504
Alw26I GTCTC 2 cut(s) 45, 176
AlwI GGATC 6 cut(s) 493, 705, 868, 1134, 1135, 1173
Ama87I CYCGRG 1 cut(s) 63
Aor13HI TCCGGA 1 cut(s) 238
AoxI GGCC 2 cut(s) 617, 1018
ApeKI GCWGC 3 cut(s) 725, 923, 1085
ApoI RAATTY 3 cut(s) 5, 77, 503
AsiGI ACCGGT 1 cut(s) 524
AspS9I GGNCC 1 cut(s) 1011
AsuHPI GGTGA 5 cut(s) 34, 425, 514, 950, 983
AsuII TTCGAA 1 cut(s) 507
AvaI CYCGRG 1 cut(s) 63
AvaII GGWCC 1 cut(s) 1011
BalI TGGCCA 1 cut(s) 619
BauI CACGAG 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 505
BbvI GCAGC 3 cut(s) 737, 935, 1097
BccI CCATC 6 cut(s) 41, 369, 653, 656, 815, 893
BceAI ACGGC 1 cut(s) 334
BciT130I CCWGG 4 cut(s) 110, 372, 453, 1243
BclI TGATCA 2 cut(s) 24, 415
BcoDI GTCTC 2 cut(s) 45, 176
BcuI ACTAGT 1 cut(s) 466
BfaI CTAG 3 cut(s) 467, 1079, 1130
BfmI CTRYAG 2 cut(s) 177, 949
BglI GCCNNNNNGGC 1 cut(s) 1031
BisI GCNGC 4 cut(s) 726, 924, 1053, 1086
BlsI GCNGC 4 cut(s) 727, 925, 1054, 1087
Bme1390I CCNGG 4 cut(s) 110, 372, 453, 1243
Bme18I GGWCC 1 cut(s) 1011
BmeT110I CYCGRG 1 cut(s) 63
BmgT120I GGNCC 1 cut(s) 1011
BmiI GGNNCC 2 cut(s) 336, 1150
BmrFI CCNGG 4 cut(s) 110, 372, 453, 1243
BmsI GCATC 2 cut(s) 754, 1186
BpiI GAAGAC 1 cut(s) 505
BpmI CTGGAG 3 cut(s) 131, 727, 1225
Bpu14I TTCGAA 1 cut(s) 507
BpuEI CTTGAG 1 cut(s) 1081
BsaBI GATNNNNATC 1 cut(s) 859
BsaJI CCNNGG 4 cut(s) 850, 1122, 1144, 1152
BsaWI WCCGGW 2 cut(s) 238, 524
BsaXI ACNNNNNCTCC 4 cut(s) 220, 250, 1140, 1170
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 115, 1158
Bse118I RCCGGY 1 cut(s) 524
Bse1I ACTGG 1 cut(s) 710
Bse3DI GCAATG 1 cut(s) 1054
Bse8I GATNNNNATC 1 cut(s) 859
BseAI TCCGGA 1 cut(s) 238
BseBI CCWGG 4 cut(s) 110, 372, 453, 1243
BseDI CCNNGG 4 cut(s) 850, 1122, 1144, 1152
BseGI GGATG 5 cut(s) 52, 247, 354, 380, 645
BseJI GATNNNNATC 1 cut(s) 859
BseLI CCNNNNNNNGG 3 cut(s) 109, 115, 1158
BseMI GCAATG 1 cut(s) 1054
BseMII CTCAG 3 cut(s) 506, 573, 1062
BseNI ACTGG 1 cut(s) 710
BseRI GAGGAG 1 cut(s) 298
BseXI GCAGC 3 cut(s) 737, 935, 1097
Bsh1236I CGCG 1 cut(s) 153
BshFI GGCC 2 cut(s) 619, 1020
BshTI ACCGGT 1 cut(s) 524
BsiHKCI CYCGRG 1 cut(s) 63
BsiSI CCGG 2 cut(s) 239, 525
BslFI GGGAC 1 cut(s) 1111
BslI CCNNNNNNNGG 3 cut(s) 109, 115, 1158
BsmAI GTCTC 2 cut(s) 45, 176
BsmBI CGTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 1111
BsnI GGCC 2 cut(s) 619, 1020
BsoBI CYCGRG 1 cut(s) 63
Bsp119I TTCGAA 1 cut(s) 507
Bsp13I TCCGGA 1 cut(s) 238
Bsp1407I TGTACA 2 cut(s) 594, 829
BspACI CCGC 3 cut(s) 151, 1053, 1199
BspANI GGCC 2 cut(s) 619, 1020
BspCNI CTCAG 3 cut(s) 505, 574, 1063
BspEI TCCGGA 1 cut(s) 238
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 2 cut(s) 336, 1150
BspPI GGATC 6 cut(s) 493, 705, 868, 1134, 1135, 1173
BspQI GCTCTTC 1 cut(s) 1140
BspT104I TTCGAA 1 cut(s) 507
BsrDI GCAATG 1 cut(s) 1054
BsrFI RCCGGY 1 cut(s) 524
BsrGI TGTACA 2 cut(s) 594, 829
BsrI ACTGG 1 cut(s) 710
BssAI RCCGGY 1 cut(s) 524
BssECI CCNNGG 4 cut(s) 850, 1122, 1144, 1152
BssSI CACGAG 1 cut(s) 249
BssT1I CCWWGG 3 cut(s) 850, 1122, 1152
Bst2BI CACGAG 1 cut(s) 249
Bst2UI CCWGG 4 cut(s) 110, 372, 453, 1243
Bst4CI ACNGT 3 cut(s) 325, 937, 1102
Bst6I CTCTTC 2 cut(s) 1140, 1179
BstAUI TGTACA 2 cut(s) 594, 829
BstBI TTCGAA 1 cut(s) 507
BstC8I GCNNGC 3 cut(s) 405, 808, 1090
BstDEI CTNAG 4 cut(s) 492, 582, 844, 1071
BstDSI CCRYGG 1 cut(s) 1144
BstF5I GGATG 5 cut(s) 52, 247, 354, 380, 645
BstFNI CGCG 1 cut(s) 153
BstMAI GTCTC 2 cut(s) 45, 176
BstMWI GCNNNNNNNGC 3 cut(s) 923, 987, 1031
BstNI CCWGG 4 cut(s) 110, 372, 453, 1243
BstNSI RCATGY 2 cut(s) 407, 810
BstSCI CCNGG 4 cut(s) 108, 370, 451, 1241
BstSFI CTRYAG 2 cut(s) 177, 949
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 3 cut(s) 737, 935, 1097
BstV2I GAAGAC 1 cut(s) 505
BstX2I RGATCY 4 cut(s) 485, 710, 860, 1126
BstXI CCANNNNNNTGG 2 cut(s) 857, 968
BstYI RGATCY 4 cut(s) 485, 710, 860, 1126
BsuRI GGCC 2 cut(s) 619, 1020
BtgI CCRYGG 1 cut(s) 1144
BtsCI GGATG 5 cut(s) 52, 247, 354, 380, 645
BtsIMutI CAGTG 3 cut(s) 159, 429, 555
Cac8I GCNNGC 3 cut(s) 405, 808, 1090
Cfr10I RCCGGY 1 cut(s) 524
Cfr13I GGNCC 1 cut(s) 1011
Csp6I GTAC 2 cut(s) 595, 830
CspAI ACCGGT 1 cut(s) 524
CviAII CATG 7 cut(s) 404, 547, 778, 807, 929, 1093, 1206
CviQI GTAC 2 cut(s) 595, 830
DdeI CTNAG 4 cut(s) 492, 582, 844, 1071
DraI TTTAAA 2 cut(s) 201, 315
DrdI GACNNNNNNGTC 1 cut(s) 1105
DseDI GACNNNNNNGTC 1 cut(s) 1105
EaeI YGGCCR 1 cut(s) 617
Eam1104I CTCTTC 2 cut(s) 1140, 1179
EarI CTCTTC 2 cut(s) 1140, 1179
Eco130I CCWWGG 3 cut(s) 850, 1122, 1152
Eco147I AGGCCT 1 cut(s) 1020
Eco32I GATATC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 1011
Eco57I CTGAAG 1 cut(s) 210
Eco88I CYCGRG 1 cut(s) 63
EcoRI GAATTC 2 cut(s) 5, 503
EcoRII CCWGG 4 cut(s) 108, 370, 451, 1241
EcoRV GATATC 1 cut(s) 121
EcoT14I CCWWGG 3 cut(s) 850, 1122, 1152
ErhI CCWWGG 3 cut(s) 850, 1122, 1152
Esp3I CGTCTC 1 cut(s) 45
FaeI CATG 7 cut(s) 407, 550, 781, 810, 932, 1096, 1209
FalI AAGNNNNNCTT 6 cut(s) 78, 110, 391, 423, 472, 504
FaqI GGGAC 1 cut(s) 1111
FatI CATG 7 cut(s) 403, 546, 777, 806, 928, 1092, 1205
FauNDI CATATG 1 cut(s) 772
FbaI TGATCA 2 cut(s) 24, 415
Fnu4HI GCNGC 4 cut(s) 726, 924, 1053, 1086
FokI GGATG 5 cut(s) 59, 254, 341, 387, 632
Fsp4HI GCNGC 4 cut(s) 726, 924, 1053, 1086
FspBI CTAG 3 cut(s) 467, 1079, 1130
GluI GCNGC 4 cut(s) 726, 924, 1053, 1086
GsuI CTGGAG 3 cut(s) 131, 727, 1225
HaeIII GGCC 2 cut(s) 619, 1020
HapII CCGG 2 cut(s) 239, 525
Hin1II CATG 7 cut(s) 407, 550, 781, 810, 932, 1096, 1209
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 6 cut(s) 61, 286, 563, 584, 669, 1106
HpaII CCGG 2 cut(s) 239, 525
HphI GGTGA 5 cut(s) 34, 425, 514, 950, 983
Hpy166II GTNNAC 2 cut(s) 597, 958
Hpy188I TCNGA 2 cut(s) 495, 1140
Hpy188III TCNNGA 6 cut(s) 10, 73, 239, 896, 1014, 1060
Hpy8I GTNNAC 2 cut(s) 597, 958
Hpy99I CGWCG 1 cut(s) 232
HpyAV CCTTC 2 cut(s) 393, 782
HpyCH4III ACNGT 3 cut(s) 325, 937, 1102
HpyCH4IV ACGT 1 cut(s) 798
HpyCH4V TGCA 5 cut(s) 348, 575, 770, 810, 1092
HpyF10VI GCNNNNNNNGC 3 cut(s) 923, 987, 1031
HpyF3I CTNAG 4 cut(s) 492, 582, 844, 1071
HpySE526I ACGT 1 cut(s) 798
Hsp92II CATG 7 cut(s) 407, 550, 781, 810, 932, 1096, 1209
Kpn2I TCCGGA 1 cut(s) 238
Ksp22I TGATCA 2 cut(s) 24, 415
LguI GCTCTTC 1 cut(s) 1140
LmnI GCTCC 2 cut(s) 112, 1148
Lsp1109I GCAGC 3 cut(s) 737, 935, 1097
LweI GCATC 2 cut(s) 754, 1186
MaeI CTAG 3 cut(s) 467, 1079, 1130
MaeII ACGT 1 cut(s) 798
MaeIII GTNAC 3 cut(s) 172, 794, 937
MboII GAAGA 7 cut(s) 25, 480, 505, 678, 1127, 1196, 1233
MflI RGATCY 4 cut(s) 485, 710, 860, 1126
MlsI TGGCCA 1 cut(s) 619
MluCI AATT 5 cut(s) 5, 77, 503, 517, 814
MluNI TGGCCA 1 cut(s) 619
MlyI GAGTC 5 cut(s) 55, 295, 572, 593, 1115
MnlI CCTC 9 cut(s) 276, 369, 524, 598, 638, 659, 1006, 1010, 1155
Mox20I TGGCCA 1 cut(s) 619
MroI TCCGGA 1 cut(s) 238
MscI TGGCCA 1 cut(s) 619
MseI TTAA 5 cut(s) 200, 219, 269, 314, 1214
Msp20I TGGCCA 1 cut(s) 619
MspI CCGG 2 cut(s) 239, 525
MspR9I CCNGG 4 cut(s) 110, 372, 453, 1243
MvaI CCWGG 4 cut(s) 110, 372, 453, 1243
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 3 cut(s) 923, 987, 1031
NdeI CATATG 1 cut(s) 772
NlaIII CATG 7 cut(s) 407, 550, 781, 810, 932, 1096, 1209
NlaIV GGNNCC 2 cut(s) 336, 1150
NspI RCATGY 2 cut(s) 407, 810
NspV TTCGAA 1 cut(s) 507
PaeI GCATGC 2 cut(s) 407, 810
PaeR7I CTCGAG 1 cut(s) 63
PceI AGGCCT 1 cut(s) 1020
PciSI GCTCTTC 1 cut(s) 1140
PfeI GAWTC 1 cut(s) 669
PfoI TCCNGGA 2 cut(s) 108, 370
PinAI ACCGGT 1 cut(s) 524
PkrI GCNGC 4 cut(s) 727, 925, 1054, 1087
PleI GAGTC 5 cut(s) 55, 294, 571, 592, 1114
PpsI GAGTC 5 cut(s) 55, 294, 571, 592, 1114
Psp6I CCWGG 4 cut(s) 108, 370, 451, 1241
PspGI CCWGG 4 cut(s) 108, 370, 451, 1241
PspN4I GGNNCC 2 cut(s) 336, 1150
PspPI GGNCC 1 cut(s) 1011
PspXI VCTCGAGB 1 cut(s) 63
PsuI RGATCY 4 cut(s) 485, 710, 860, 1126
RsaI GTAC 2 cut(s) 596, 831
RsaNI GTAC 2 cut(s) 595, 830
SapI GCTCTTC 1 cut(s) 1140
SaqAI TTAA 5 cut(s) 200, 219, 269, 314, 1214
SatI GCNGC 4 cut(s) 726, 924, 1053, 1086
Sau96I GGNCC 1 cut(s) 1011
SchI GAGTC 5 cut(s) 55, 295, 572, 593, 1115
ScrFI CCNGG 4 cut(s) 110, 372, 453, 1243
SfaNI GCATC 2 cut(s) 754, 1186
SfcI CTRYAG 2 cut(s) 177, 949
Sfr274I CTCGAG 1 cut(s) 63
SfuI TTCGAA 1 cut(s) 507
SgrAI CRCCGGYG 1 cut(s) 524
SinI GGWCC 1 cut(s) 1011
SlaI CTCGAG 1 cut(s) 63
SmlI CTYRAG 2 cut(s) 63, 1060
SmoI CTYRAG 2 cut(s) 63, 1060
SpeI ACTAGT 1 cut(s) 466
SphI GCATGC 2 cut(s) 407, 810
Sse9I AATT 5 cut(s) 5, 77, 503, 517, 814
SseBI AGGCCT 1 cut(s) 1020
SsiI CCGC 3 cut(s) 151, 1053, 1199
SspMI CTAG 3 cut(s) 467, 1079, 1130
StuI AGGCCT 1 cut(s) 1020
StyD4I CCNGG 4 cut(s) 108, 370, 451, 1241
StyI CCWWGG 3 cut(s) 850, 1122, 1152
TaaI ACNGT 3 cut(s) 325, 937, 1102
TaiI ACGT 1 cut(s) 801
TaqI TCGA 4 cut(s) 9, 64, 507, 590
TasI AATT 5 cut(s) 5, 77, 503, 517, 814
TatI WGTACW 2 cut(s) 594, 829
TauI GCSGC 1 cut(s) 1055
TfiI GAWTC 1 cut(s) 669
Tru1I TTAA 5 cut(s) 200, 219, 269, 314, 1214
Tru9I TTAA 5 cut(s) 200, 219, 269, 314, 1214
TscAI CASTG 3 cut(s) 166, 436, 562
TseI GCWGC 3 cut(s) 725, 923, 1085
TspDTI ATGAA 7 cut(s) 70, 258, 462, 711, 735, 794, 1180
TspGWI ACGGA 2 cut(s) 1161, 1196
TspRI CASTG 3 cut(s) 166, 436, 562
VpaK11BI GGWCC 1 cut(s) 1011
XapI RAATTY 3 cut(s) 5, 77, 503
XceI RCATGY 2 cut(s) 407, 810
XhoI CTCGAG 1 cut(s) 63
XspI CTAG 3 cut(s) 467, 1079, 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.